Wall clock time and date at job start Tue Mar 31 2020 14:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47328 * 2 1 4 4 C 1.53002 * 109.47088 * 119.99882 * 2 1 3 5 5 C 1.52995 * 117.50123 * 300.00341 * 4 2 1 6 6 C 1.53002 * 60.00240 * 252.50943 * 5 4 2 7 7 N 1.46499 * 109.47665 * 240.00010 * 2 1 3 8 8 C 1.35816 * 126.04874 * 324.71808 * 7 2 1 9 9 C 1.35793 * 107.55770 * 179.89483 * 8 7 2 10 10 N 1.40657 * 126.08874 * 180.09890 * 9 8 7 11 11 C 1.34775 * 119.99881 * 180.28567 * 10 9 8 12 12 O 1.21615 * 120.00525 * 0.02562 * 11 10 9 13 13 C 1.47609 * 119.99319 * 180.02562 * 11 10 9 14 14 C 1.40022 * 119.90001 * 359.72142 * 13 11 10 15 15 C 1.36303 * 120.10755 * 179.75677 * 14 13 11 16 16 C 1.40898 * 119.89028 * 0.52354 * 15 14 13 17 17 C 1.41092 * 120.10445 * 179.71675 * 16 15 14 18 18 H 1.08003 * 120.00145 * 205.08457 * 17 16 15 19 19 C 1.40223 * 120.00048 * 25.07765 * 17 16 15 20 20 N 1.30643 * 119.99753 * 18.02979 * 19 17 16 21 21 Si 1.86802 * 120.00166 * 198.02330 * 19 17 16 22 22 H 1.48497 * 109.47081 * 94.52837 * 21 19 17 23 23 H 1.48496 * 109.47066 * 214.53053 * 21 19 17 24 24 H 1.48505 * 109.46956 * 334.53000 * 21 19 17 25 25 C 1.40901 * 119.79667 * 359.73068 * 16 15 14 26 26 C 1.36303 * 119.88900 * 0.02562 * 25 16 15 27 27 C 1.40281 * 107.82680 * 0.36459 * 9 8 7 28 28 N 1.30814 * 108.33261 * 359.77205 * 27 9 8 29 29 H 1.09011 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47378 * 299.99906 * 1 2 3 31 31 H 1.09000 * 109.47527 * 60.00429 * 1 2 3 32 32 H 1.09005 * 115.56095 * 85.69466 * 4 2 1 33 33 H 1.09004 * 117.50041 * 145.02151 * 5 4 2 34 34 H 1.09001 * 117.49723 * 359.97438 * 5 4 2 35 35 H 1.08993 * 117.49983 * 107.48398 * 6 5 4 36 36 H 1.09000 * 117.49870 * 252.51189 * 6 5 4 37 37 H 1.08006 * 126.21718 * 0.03116 * 8 7 2 38 38 H 0.97002 * 119.99764 * 0.28627 * 10 9 8 39 39 H 1.08002 * 119.94697 * 0.02562 * 14 13 11 40 40 H 1.07998 * 120.05604 * 180.23493 * 15 14 13 41 41 H 0.97000 * 120.00221 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.05561 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.94758 * 179.97438 * 26 25 16 44 44 H 1.07996 * 125.83256 * 179.77556 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6356 -0.1496 2.6096 6 6 3.0741 0.0052 2.1118 7 7 2.0184 -0.6906 -1.1961 8 6 1.4398 -1.7661 -1.7904 9 6 2.1993 -2.0976 -2.8661 10 7 1.9526 -3.1550 -3.7603 11 6 2.7947 -3.3782 -4.7886 12 8 3.7681 -2.6658 -4.9432 13 6 2.5353 -4.4875 -5.7273 14 6 1.4171 -5.3100 -5.5439 15 6 1.1709 -6.3325 -6.4109 16 6 2.0498 -6.5679 -7.4867 17 6 1.8025 -7.6287 -8.3835 18 1 2.6191 -8.0722 -8.9338 19 6 0.4963 -8.1074 -8.5602 20 7 -0.5223 -7.3779 -8.1901 21 14 0.2129 -9.7881 -9.3248 22 1 0.0711 -10.8032 -8.2503 23 1 -1.0259 -9.7570 -10.1431 24 1 1.3683 -10.1400 -10.1888 25 6 3.1766 -5.7409 -7.6641 26 6 3.4119 -4.7178 -6.7948 27 6 3.2772 -1.2017 -2.9232 28 7 3.1680 -0.3624 -1.9259 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.1271 -1.8045 1.1643 33 1 1.4568 -0.8567 3.4197 34 1 1.0066 0.7406 2.6146 35 1 3.3910 0.9969 1.7891 36 1 3.8415 -0.6001 2.5942 37 1 0.5381 -2.2653 -1.4674 38 1 1.1764 -3.7234 -3.6368 39 1 0.7462 -5.1314 -4.7166 40 1 0.3061 -6.9640 -6.2709 41 1 -1.4258 -7.7091 -8.3119 42 1 3.8533 -5.9178 -8.4870 43 1 4.2756 -4.0835 -6.9296 44 1 4.0630 -1.2044 -3.6641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491066189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:11 Heat of formation + Delta-G solvation = 68.490112 kcal Electronic energy + Delta-G solvation = -25738.231322 eV Core-core repulsion = 22042.971123 eV Total energy + Delta-G solvation = -3695.260198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.37629 -40.64170 -39.04416 -38.65023 -35.71695 -35.65872 -34.27263 -32.14093 -31.30182 -30.61780 -29.69856 -27.62759 -25.47507 -24.07092 -23.21177 -22.91841 -22.85250 -22.14424 -21.13550 -20.52546 -19.36111 -18.73406 -18.17333 -17.19668 -16.79469 -16.49493 -16.21285 -15.80416 -15.73310 -15.61159 -15.13531 -14.88992 -14.83396 -14.46810 -14.12268 -13.89084 -13.80911 -13.68227 -13.35066 -13.19004 -12.94231 -12.85452 -12.63520 -12.37817 -12.35858 -12.20876 -11.82659 -11.74429 -11.67154 -11.40631 -11.35272 -11.12021 -11.01983 -10.65715 -10.32798 -9.57858 -9.45655 -8.79907 -8.63295 -6.47138 0.37184 0.84954 1.16988 1.38910 1.42741 1.43221 1.54690 1.70734 2.17415 2.30457 2.37921 2.80874 2.82642 3.53208 3.70507 3.72741 3.82697 3.99121 4.02483 4.08217 4.19365 4.26585 4.31545 4.39471 4.46701 4.64106 4.66232 4.72693 4.79464 4.91378 4.94167 4.98222 5.04423 5.14349 5.15451 5.20578 5.23658 5.27562 5.30720 5.60097 5.80391 5.88028 5.96156 6.00459 6.12897 6.23836 6.54579 6.58441 6.77291 6.78264 6.89744 7.42340 8.16309 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.002150 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.175366 B =13018.948420 C =13720.211733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.191 3.809 3 H 0.098 0.902 4 C -0.183 4.183 5 C -0.142 4.142 6 C -0.188 4.188 7 N -0.357 5.357 8 C 0.033 3.967 9 C -0.014 4.014 10 N -0.637 5.637 11 C 0.571 3.429 12 O -0.588 6.588 13 C -0.289 4.289 14 C -0.053 4.053 15 C -0.197 4.197 16 C 0.101 3.899 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.796 5.796 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.253 4.253 26 C -0.031 4.031 27 C 0.026 3.974 28 N -0.311 5.311 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.213 0.787 38 H 0.419 0.581 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.297 0.703 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 8.305 18.480 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.090 3.910 3 H 0.116 0.884 4 C -0.202 4.202 5 C -0.179 4.179 6 C -0.225 4.225 7 N -0.143 5.143 8 C -0.115 4.115 9 C -0.119 4.119 10 N -0.283 5.283 11 C 0.366 3.634 12 O -0.471 6.471 13 C -0.293 4.293 14 C -0.072 4.072 15 C -0.216 4.216 16 C 0.098 3.902 17 C -0.499 4.499 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.420 5.420 21 Si 0.807 3.193 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.272 4.272 26 C -0.050 4.050 27 C -0.159 4.159 28 N -0.134 5.134 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.835 9.880 19.046 21.994 hybrid contribution -0.377 -1.634 -1.199 2.062 sum -5.213 8.246 17.847 20.340 Atomic orbital electron populations 1.22174 0.90259 1.04555 1.04426 1.21053 0.96060 0.95401 0.78480 0.88374 1.22601 1.06541 0.99311 0.91736 1.23085 0.96806 1.03492 0.94498 1.23105 0.93614 1.01965 1.03802 1.48802 1.18692 1.23916 1.22850 1.22273 1.01348 0.93344 0.94584 1.18024 1.00152 0.96724 0.96967 1.42585 1.28737 1.30696 1.26259 1.18441 0.81284 0.83569 0.80066 1.90514 1.31019 1.50516 1.75088 1.19011 1.03326 1.03775 1.03214 1.20741 0.94641 0.93932 0.97848 1.20996 1.02639 1.01523 0.96439 1.18161 0.90727 0.90302 0.91012 1.20119 0.94731 1.14199 1.20826 0.89723 1.26912 0.94787 1.02176 0.94239 1.69757 1.01086 1.37063 1.34046 0.85102 0.79007 0.76293 0.78894 1.18283 1.18968 1.18225 1.20851 1.03156 1.00177 1.03012 1.20514 0.96481 0.95349 0.92661 1.24299 0.99985 0.93815 0.97849 1.77259 1.04390 1.24146 1.07586 0.90381 0.87544 0.91929 0.88384 0.87249 0.86575 0.88606 0.88988 0.77003 0.74233 0.85500 0.86748 0.89131 0.87817 0.87764 0.80105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.68 71.98 0.63 -0.89 16 2 C 0.19 3.05 3.55 44.99 0.16 3.21 16 3 H 0.10 1.62 7.90 -2.39 -0.02 1.60 16 4 C -0.18 -2.63 5.45 -10.79 -0.06 -2.69 16 5 C -0.14 -1.24 9.73 30.59 0.30 -0.94 16 6 C -0.19 -2.59 10.18 30.60 0.31 -2.28 16 7 N -0.36 -8.76 3.55 -326.40 -1.16 -9.92 16 8 C 0.03 0.78 10.66 83.51 0.89 1.67 16 9 C -0.01 -0.46 6.90 37.65 0.26 -0.20 16 10 N -0.64 -21.33 5.42 -306.83 -1.66 -22.99 16 11 C 0.57 24.11 7.73 86.72 0.67 24.78 16 12 O -0.59 -27.70 13.47 -4.08 -0.05 -27.75 16 13 C -0.29 -12.95 5.89 -19.94 -0.12 -13.07 16 14 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 15 C -0.20 -9.48 8.63 22.47 0.19 -9.29 16 16 C 0.10 5.19 5.57 -21.28 -0.12 5.07 16 17 C -0.47 -23.52 9.04 23.45 0.21 -23.31 16 18 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 19 C 0.04 1.74 5.13 85.35 0.44 2.18 16 20 N -0.80 -37.33 10.99 21.87 0.24 -37.09 16 21 Si 0.99 34.26 29.60 68.60 2.03 36.29 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 23 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 25 C -0.25 -12.42 9.73 22.47 0.22 -12.20 16 26 C -0.03 -1.47 9.52 22.25 0.21 -1.25 16 27 C 0.03 0.96 10.84 85.34 0.92 1.89 16 28 N -0.31 -10.22 12.56 -56.76 -0.71 -10.94 16 29 H 0.08 0.64 7.17 -2.38 -0.02 0.62 16 30 H 0.11 0.52 7.29 -2.39 -0.02 0.51 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.61 7.61 -2.39 -0.02 0.60 16 35 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.21 3.09 7.29 -2.91 -0.02 3.07 16 38 H 0.42 11.39 6.83 -92.71 -0.63 10.76 16 39 H 0.13 4.26 6.37 -2.91 -0.02 4.24 16 40 H 0.11 5.56 6.19 -2.91 -0.02 5.55 16 41 H 0.30 12.34 8.29 -92.71 -0.77 11.57 16 42 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.10 4.82 7.63 -2.91 -0.02 4.79 16 44 H 0.18 7.39 5.91 -2.91 -0.02 7.38 16 Total: -1.00 -65.13 368.69 4.42 -60.71 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: 0.41 Total: 41.03 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 5.33 Total: -29.35 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -3.29 Total: -80.94 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Total: -65.13 4.42 -60.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491066189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.203 kcal (2) G-P(sol) polarization free energy of solvation -65.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds