Wall clock time and date at job start Tue Mar 31 2020 14:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 N 1.46506 * 109.47107 * 120.00503 * 2 1 3 5 5 C 1.46500 * 119.99760 * 304.28409 * 4 2 1 6 6 C 1.50701 * 109.46832 * 270.00297 * 5 4 2 7 7 H 1.07999 * 120.00129 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99587 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99721 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99948 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47328 * 90.00233 * 10 8 6 12 12 H 1.48508 * 109.47045 * 210.00204 * 10 8 6 13 13 H 1.48499 * 109.47378 * 330.00007 * 10 8 6 14 14 C 1.34771 * 119.99736 * 124.28566 * 4 2 1 15 15 O 1.21650 * 120.00615 * 354.36307 * 14 4 2 16 16 C 1.46750 * 119.99501 * 174.64044 * 14 4 2 17 17 C 1.34645 * 120.00254 * 220.72946 * 16 14 4 18 18 C 1.47365 * 120.00033 * 353.47350 * 17 16 14 19 19 C 1.40947 * 119.79007 * 231.60904 * 18 17 16 20 20 N 1.31139 * 120.53524 * 179.73937 * 19 18 17 21 21 C 1.33877 * 119.86649 * 0.53662 * 20 19 18 22 22 C 1.40495 * 120.94259 * 179.70579 * 21 20 19 23 23 C 1.36119 * 119.76527 * 180.02562 * 22 21 20 24 24 C 1.39434 * 121.00602 * 0.02562 * 23 22 21 25 25 C 1.36027 * 120.96123 * 359.95637 * 24 23 22 26 26 C 1.40788 * 119.70882 * 0.04623 * 25 24 23 27 27 N 1.32422 * 119.78908 * 51.87661 * 18 17 16 28 28 H 1.09006 * 109.46647 * 299.99788 * 1 2 3 29 29 H 1.08997 * 109.46878 * 59.99807 * 1 2 3 30 30 H 1.09001 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46596 * 239.99673 * 2 1 3 32 32 H 1.09009 * 109.46829 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47312 * 299.99927 * 3 2 1 34 34 H 1.08995 * 109.47555 * 60.00530 * 3 2 1 35 35 H 1.08997 * 109.46942 * 29.99834 * 5 4 2 36 36 H 1.08995 * 109.46841 * 150.00375 * 5 4 2 37 37 H 0.96997 * 119.99748 * 180.02562 * 9 8 6 38 38 H 1.08004 * 120.00096 * 40.73796 * 16 14 4 39 39 H 1.07998 * 119.99952 * 173.47296 * 17 16 14 40 40 H 1.08002 * 119.73434 * 359.97438 * 19 18 17 41 41 H 1.08000 * 120.11562 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.49558 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.52028 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.15046 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.5887 -0.2474 2.5247 6 6 2.5482 0.7935 3.0415 7 1 3.3937 1.0943 2.4407 8 6 2.3472 1.3609 4.2820 9 7 3.1842 2.2696 4.7328 10 14 0.8852 0.8401 5.3214 11 1 1.2735 -0.3051 6.1834 12 1 0.4535 1.9771 6.1737 13 1 -0.2339 0.4342 4.4337 14 6 2.8629 -1.7340 1.0742 15 8 3.1392 -2.1673 -0.0283 16 6 3.4444 -2.3510 2.2720 17 6 4.7368 -2.7286 2.2750 18 6 5.5285 -2.6560 1.0341 19 6 6.2497 -3.7851 0.5966 20 7 6.9549 -3.7383 -0.5081 21 6 7.0006 -2.6070 -1.2224 22 6 7.7537 -2.5298 -2.4059 23 6 7.7837 -1.3673 -3.1133 24 6 7.0769 -0.2455 -2.6817 25 6 6.3361 -0.2811 -1.5413 26 6 6.2803 -1.4655 -0.7823 27 7 5.5620 -1.5287 0.3402 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1302 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6769 1.9563 0.8900 35 1 0.5887 0.1812 2.4589 36 1 1.5752 -1.0988 3.2051 37 1 3.0430 2.6685 5.6056 38 1 2.8356 -2.5024 3.1512 39 1 5.1932 -3.0847 3.1867 40 1 6.2184 -4.6975 1.1738 41 1 8.3076 -3.3897 -2.7527 42 1 8.3644 -1.3127 -4.0223 43 1 7.1179 0.6648 -3.2613 44 1 5.7934 0.5954 -1.2194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491403137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:23 Heat of formation + Delta-G solvation = 39.722866 kcal Electronic energy + Delta-G solvation = -27797.790670 eV Core-core repulsion = 24101.283030 eV Total energy + Delta-G solvation = -3696.507640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31071 -40.86114 -38.57585 -37.47610 -35.93147 -34.89605 -34.33552 -33.03765 -31.58493 -30.82023 -29.68468 -28.09305 -26.79807 -25.37325 -24.48367 -23.95068 -23.19641 -21.30643 -19.87368 -19.35676 -18.99306 -18.89545 -18.39483 -17.44534 -16.71514 -16.51372 -16.08652 -15.90560 -15.55405 -15.40916 -15.14044 -14.93267 -14.74137 -14.61632 -14.45057 -13.89302 -13.81012 -13.43044 -13.29451 -12.99719 -12.89561 -12.73943 -12.72356 -12.64882 -12.63801 -12.55516 -12.39479 -12.31349 -11.91929 -11.71994 -11.45096 -10.97038 -10.72305 -10.50476 -10.06069 -9.74347 -9.43709 -9.33607 -8.21097 -6.25818 -0.78851 -0.49018 0.54522 1.00847 1.42272 1.44581 1.53284 1.84942 2.05100 2.39469 2.52687 3.01465 3.07613 3.12089 3.18269 3.33738 3.68504 3.77016 3.87700 4.05255 4.10202 4.19999 4.22824 4.30523 4.38075 4.39240 4.53350 4.62938 4.76967 4.82840 4.86704 4.89973 4.92331 4.96192 5.03229 5.11234 5.16473 5.22755 5.30863 5.34467 5.39553 5.45013 5.53277 5.77189 5.83793 6.28681 6.31715 6.68646 6.78752 6.81465 7.31546 7.42903 8.95448 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.004121 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.789256 B = 6793.249374 C = 7210.920298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 C -0.140 4.140 4 N -0.584 5.584 5 C 0.215 3.785 6 C -0.517 4.517 7 H 0.028 0.972 8 C 0.018 3.982 9 N -0.946 5.946 10 Si 0.936 3.064 11 H -0.259 1.259 12 H -0.291 1.291 13 H -0.240 1.240 14 C 0.547 3.453 15 O -0.591 6.591 16 C -0.150 4.150 17 C -0.062 4.062 18 C 0.121 3.879 19 C 0.096 3.904 20 N -0.441 5.441 21 C 0.048 3.952 22 C -0.094 4.094 23 C -0.089 4.089 24 C -0.088 4.088 25 C -0.111 4.111 26 C 0.064 3.936 27 N -0.434 5.434 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.162 0.838 39 H 0.193 0.807 40 H 0.214 0.786 41 H 0.158 0.842 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 -9.770 -10.624 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 C -0.198 4.198 4 N -0.314 5.314 5 C 0.093 3.907 6 C -0.555 4.555 7 H 0.046 0.954 8 C -0.180 4.180 9 N -0.587 5.587 10 Si 0.759 3.241 11 H -0.184 1.184 12 H -0.217 1.217 13 H -0.163 1.163 14 C 0.338 3.662 15 O -0.474 6.474 16 C -0.173 4.173 17 C -0.083 4.083 18 C -0.033 4.033 19 C -0.080 4.080 20 N -0.154 5.154 21 C -0.075 4.075 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.062 4.062 27 N -0.148 5.148 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.180 0.820 39 H 0.210 0.790 40 H 0.231 0.769 41 H 0.176 0.824 42 H 0.197 0.803 43 H 0.185 0.815 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.479 -9.727 -11.271 15.289 hybrid contribution -0.497 0.632 1.126 1.383 sum 2.982 -9.095 -10.145 13.948 Atomic orbital electron populations 1.22057 0.93013 1.02297 1.03294 1.20954 0.95382 0.92735 0.87739 1.21960 0.99426 0.96112 1.02261 1.47933 1.44954 1.30336 1.08145 1.19664 0.95794 0.95144 0.80088 1.21412 1.10416 1.21722 1.01992 0.95383 1.25740 0.99037 0.94528 0.98728 1.70073 1.39280 1.29401 1.19932 0.85893 0.80361 0.78457 0.79395 1.18388 1.21704 1.16298 1.18730 0.77721 0.80234 0.89561 1.90675 1.62636 1.65112 1.29006 1.23372 0.97775 0.97835 0.98285 1.22342 0.92434 0.98283 0.95205 1.21679 0.95259 0.90843 0.95527 1.24460 0.91166 0.99264 0.93113 1.68647 1.16837 1.24382 1.05520 1.20054 0.99350 0.90124 0.98010 1.21107 0.97931 1.00455 0.91856 1.21469 0.97769 0.91061 1.00550 1.21390 0.94208 1.00665 0.94481 1.21006 1.00325 0.95781 0.95963 1.19970 0.96176 0.96182 0.93839 1.68878 1.13732 1.27038 1.05172 0.92109 0.89470 0.92431 0.90979 0.95917 0.90236 0.92575 0.93475 0.93611 0.92639 0.82023 0.79009 0.76948 0.82401 0.80336 0.81525 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 9.09 71.98 0.65 -3.81 16 2 C 0.14 5.12 3.25 44.99 0.15 5.27 16 3 C -0.14 -5.42 8.59 71.98 0.62 -4.80 16 4 N -0.58 -24.49 2.39 -806.79 -1.93 -26.41 16 5 C 0.21 9.23 3.53 85.63 0.30 9.53 16 6 C -0.52 -27.32 8.39 25.60 0.21 -27.11 16 7 H 0.03 1.76 7.84 -2.91 -0.02 1.73 16 8 C 0.02 0.94 5.47 84.66 0.46 1.41 16 9 N -0.95 -56.39 13.96 21.45 0.30 -56.10 16 10 Si 0.94 39.40 27.47 68.60 1.88 41.29 16 11 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 12 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 14 C 0.55 23.27 6.52 86.47 0.56 23.84 16 15 O -0.59 -27.67 13.67 -4.19 -0.06 -27.73 16 16 C -0.15 -5.39 8.93 23.67 0.21 -5.18 16 17 C -0.06 -1.97 9.89 23.85 0.24 -1.74 16 18 C 0.12 4.34 5.18 42.12 0.22 4.56 16 19 C 0.10 2.85 10.95 85.46 0.94 3.79 16 20 N -0.44 -14.18 10.45 -187.00 -1.95 -16.13 16 21 C 0.05 1.60 6.59 40.31 0.27 1.87 16 22 C -0.09 -2.30 9.98 22.33 0.22 -2.08 16 23 C -0.09 -1.70 9.95 22.06 0.22 -1.48 16 24 C -0.09 -1.99 9.95 22.04 0.22 -1.77 16 25 C -0.11 -3.68 9.99 22.38 0.22 -3.46 16 26 C 0.06 2.43 6.59 40.45 0.27 2.70 16 27 N -0.43 -18.40 8.11 -177.65 -1.44 -19.84 16 28 H 0.06 1.87 6.54 -2.38 -0.02 1.85 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.92 6.91 -2.39 -0.02 2.91 16 32 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.40 6.92 -2.39 -0.02 2.39 16 35 H 0.05 1.94 5.27 -2.39 -0.01 1.93 16 36 H 0.05 1.81 5.73 -2.39 -0.01 1.80 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.16 4.92 6.77 -2.91 -0.02 4.90 16 39 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 40 H 0.21 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 42 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -78.65 364.84 3.75 -74.90 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.96 Total: 28.48 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.98 Total: 1.54 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -5.02 Total: -118.48 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.29 kcal Total: -78.65 3.75 -74.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491403137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.627 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds