Wall clock time and date at job start Tue Mar 31 2020 14:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47152 * 2 1 4 4 C 1.50696 * 109.47251 * 239.99974 * 2 1 3 5 5 C 1.35356 * 126.38139 * 95.25681 * 4 2 1 6 6 C 1.41545 * 105.50095 * 180.12192 * 5 4 2 7 7 C 1.47614 * 126.52098 * 179.90302 * 6 5 4 8 8 O 1.21611 * 119.99724 * 354.07122 * 7 6 5 9 9 N 1.34774 * 120.00066 * 174.06681 * 7 6 5 10 10 C 1.36902 * 120.00018 * 175.34297 * 9 7 6 11 11 H 1.08001 * 120.00825 * 227.93099 * 10 9 7 12 12 C 1.39023 * 119.99986 * 47.93400 * 10 9 7 13 13 N 1.31382 * 120.00385 * 193.91911 * 12 10 9 14 14 Si 1.86801 * 119.99886 * 13.91972 * 12 10 9 15 15 H 1.48507 * 109.46931 * 265.55250 * 14 12 10 16 16 H 1.48500 * 109.47165 * 25.55402 * 14 12 10 17 17 H 1.48499 * 109.47195 * 145.55629 * 14 12 10 18 18 C 1.46496 * 119.99883 * 355.34785 * 9 7 6 19 19 C 1.53003 * 117.49912 * 182.49681 * 18 9 7 20 20 C 1.52998 * 59.99951 * 252.50744 * 19 18 9 21 21 N 1.31857 * 106.95477 * 359.63890 * 6 5 4 22 22 N 1.28470 * 110.06086 * 0.22676 * 21 6 5 23 23 H 0.96999 * 124.87538 * 180.02562 * 22 21 6 24 24 C 1.50701 * 109.47181 * 119.99871 * 2 1 3 25 25 C 1.38238 * 119.99947 * 59.72496 * 24 2 1 26 26 C 1.38236 * 119.99891 * 179.78802 * 25 24 2 27 27 C 1.38228 * 119.99795 * 0.44251 * 26 25 24 28 28 C 1.38237 * 120.00568 * 359.81380 * 27 26 25 29 29 C 1.38230 * 120.00207 * 239.99941 * 24 2 1 30 30 H 1.08998 * 109.47449 * 300.00224 * 1 2 3 31 31 H 1.09001 * 109.47372 * 60.00214 * 1 2 3 32 32 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 33 33 H 1.07993 * 127.24571 * 359.97438 * 5 4 2 34 34 H 0.96995 * 120.00521 * 180.02562 * 13 12 10 35 35 H 1.09005 * 115.55005 * 328.20711 * 18 9 7 36 36 H 1.09002 * 117.49817 * 0.02562 * 19 18 9 37 37 H 1.09002 * 117.49899 * 145.01581 * 19 18 9 38 38 H 1.08999 * 117.49768 * 252.50841 * 20 19 18 39 39 H 1.09002 * 117.51198 * 107.48287 * 20 19 18 40 40 H 1.08008 * 120.00022 * 0.02562 * 25 24 2 41 41 H 1.08004 * 119.99734 * 180.28113 * 26 25 24 42 42 H 1.08002 * 119.99942 * 179.83381 * 27 26 25 43 43 H 1.07998 * 120.00087 * 179.97438 * 28 27 26 44 44 H 1.08006 * 119.99771 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.3941 -0.1325 -2.3997 6 6 2.7886 -1.1989 -3.2426 7 6 3.2690 -1.0874 -4.6340 8 8 3.2536 -0.0102 -5.1980 9 7 3.7245 -2.1795 -5.2792 10 6 4.0804 -2.0964 -6.5985 11 1 3.7220 -2.8333 -7.3021 12 6 4.9032 -1.0634 -7.0328 13 7 5.0258 -0.8170 -8.3175 14 14 5.8345 -0.0257 -5.7897 15 1 5.0475 1.1935 -5.4741 16 1 6.0475 -0.8126 -4.5485 17 1 7.1488 0.3672 -6.3585 18 6 3.8389 -3.4555 -4.5686 19 6 4.4174 -4.6439 -5.3393 20 6 2.9230 -4.5971 -5.0147 21 7 2.6510 -2.3103 -2.5466 22 7 2.2104 -2.0418 -1.3701 23 1 2.0317 -2.7006 -0.6810 24 6 2.0323 -0.7104 1.2305 25 6 1.6937 -2.0322 1.4521 26 6 2.1581 -2.6851 2.5786 27 6 2.9535 -2.0135 3.4880 28 6 3.2879 -0.6902 3.2691 29 6 2.8270 -0.0386 2.1404 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.3817 0.9204 -2.6398 34 1 5.6001 -0.0965 -8.6205 35 1 4.0715 -3.3828 -3.5062 36 1 4.7134 -4.4762 -6.3749 37 1 5.0311 -5.3532 -4.7840 38 1 2.5535 -5.2756 -4.2458 39 1 2.2352 -4.3986 -5.8366 40 1 1.0694 -2.5559 0.7432 41 1 1.8972 -3.7191 2.7495 42 1 3.3142 -2.5228 4.3695 43 1 3.9090 -0.1655 3.9798 44 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528175246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:01 Heat of formation + Delta-G solvation = 114.604683 kcal Electronic energy + Delta-G solvation = -27403.302971 eV Core-core repulsion = 23710.042451 eV Total energy + Delta-G solvation = -3693.260520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43770 -39.69643 -38.70285 -36.24172 -35.28895 -32.89118 -31.81095 -31.35386 -31.04394 -30.23085 -28.99487 -25.52860 -24.53888 -23.13133 -22.68226 -21.73856 -21.54526 -20.89758 -20.66633 -19.16603 -17.53315 -17.31019 -16.59139 -15.97010 -15.71361 -15.40346 -15.19888 -14.79898 -14.34465 -14.08941 -13.90594 -13.73678 -13.47088 -13.42704 -13.25126 -13.18643 -12.88951 -12.45712 -12.37952 -12.10906 -11.84691 -11.43514 -11.27119 -11.12421 -11.01191 -10.80478 -10.43783 -10.26000 -10.03642 -9.72861 -9.54322 -9.30206 -9.10811 -8.91058 -8.68317 -8.58754 -8.43889 -7.35831 -6.14559 -3.97503 0.95115 1.02769 2.10319 2.51158 3.10812 3.43855 3.51817 3.57857 3.73758 4.23638 4.28187 4.34808 4.46128 4.59836 4.61799 4.65504 4.75901 4.81267 4.97095 4.99041 5.10464 5.12949 5.22446 5.29294 5.50364 5.51555 5.60923 5.65574 5.71539 5.77279 5.82689 5.88988 5.95070 6.06005 6.09161 6.15435 6.20710 6.25849 6.31592 6.48691 6.61822 6.73259 6.88859 7.02239 7.27613 7.88740 8.06496 8.30097 8.83116 8.93486 9.45198 9.86719 10.89936 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.003632 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.529198 B = 7707.285195 C = 8243.113516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.019 3.981 3 H 0.104 0.896 4 C 0.012 3.988 5 C -0.180 4.180 6 C 0.020 3.980 7 C 0.531 3.469 8 O -0.538 6.538 9 N -0.421 5.421 10 C -0.342 4.342 11 H 0.097 0.903 12 C 0.091 3.909 13 N -0.868 5.868 14 Si 0.916 3.084 15 H -0.254 1.254 16 H -0.281 1.281 17 H -0.309 1.309 18 C 0.076 3.924 19 C -0.179 4.179 20 C -0.191 4.191 21 N -0.261 5.261 22 N -0.394 5.394 23 H 0.434 0.566 24 C -0.074 4.074 25 C -0.133 4.133 26 C -0.111 4.111 27 C -0.125 4.125 28 C -0.112 4.112 29 C -0.111 4.111 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.157 0.843 34 H 0.273 0.727 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 -2.591 24.669 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.001 4.001 3 H 0.122 0.878 4 C -0.114 4.114 5 C -0.208 4.208 6 C -0.142 4.142 7 C 0.319 3.681 8 O -0.419 6.419 9 N -0.140 5.140 10 C -0.468 4.468 11 H 0.114 0.886 12 C -0.118 4.118 13 N -0.503 5.503 14 Si 0.747 3.253 15 H -0.180 1.180 16 H -0.207 1.207 17 H -0.239 1.239 18 C -0.029 4.029 19 C -0.216 4.216 20 C -0.229 4.229 21 N -0.096 5.096 22 N -0.109 5.109 23 H 0.280 0.720 24 C -0.074 4.074 25 C -0.151 4.151 26 C -0.130 4.130 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.129 4.129 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.175 0.825 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.446 -3.080 24.074 25.112 hybrid contribution 0.302 0.822 0.986 1.319 sum -6.144 -2.258 25.060 25.901 Atomic orbital electron populations 1.21867 0.92675 1.02527 1.02789 1.18741 0.96231 0.98643 0.86443 0.87760 1.20972 1.07500 0.85218 0.97668 1.21476 1.06917 1.00588 0.91853 1.22471 1.05494 0.89435 0.96764 1.17058 0.81583 0.85905 0.83528 1.90614 1.58016 1.26772 1.66463 1.42957 1.55003 1.05890 1.10200 1.18724 1.31337 1.15504 0.81228 0.88565 1.25385 0.94484 0.96061 0.95892 1.69695 1.36275 1.29814 1.14500 0.86216 0.76066 0.82448 0.80558 1.17984 1.20680 1.23877 1.22018 1.03335 0.81815 0.95760 1.23189 0.95446 0.99986 1.03026 1.23135 0.93643 1.02856 1.03315 1.73862 1.16909 1.26000 0.92790 1.43709 1.48858 1.06575 1.11769 0.71964 1.19863 0.97504 0.94252 0.95761 1.20973 1.01206 0.94591 0.98373 1.21148 0.97586 0.99951 0.94267 1.21178 0.98638 0.94907 0.99537 1.21204 0.99447 0.94949 0.97441 1.21109 0.97373 1.00262 0.94157 0.91681 0.91187 0.92515 0.82487 0.91742 0.85913 0.87136 0.89708 0.89794 0.89187 0.86494 0.85791 0.85981 0.85842 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.98 37.16 0.33 -0.85 16 2 C 0.02 0.19 2.96 -92.93 -0.28 -0.08 16 3 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 4 C 0.01 0.17 5.87 -82.21 -0.48 -0.31 16 5 C -0.18 -3.21 10.73 -39.35 -0.42 -3.63 16 6 C 0.02 0.42 6.83 -82.77 -0.57 -0.14 16 7 C 0.53 13.88 6.01 -12.44 -0.07 13.81 16 8 O -0.54 -15.71 12.41 5.27 0.07 -15.65 16 9 N -0.42 -10.95 2.42 -108.87 -0.26 -11.21 16 10 C -0.34 -9.95 8.31 -15.00 -0.12 -10.07 16 11 H 0.10 2.90 7.57 -52.49 -0.40 2.51 16 12 C 0.09 2.75 4.99 -17.45 -0.09 2.66 16 13 N -0.87 -26.91 13.95 55.50 0.77 -26.14 16 14 Si 0.92 25.43 24.66 -169.99 -4.19 21.24 16 15 H -0.25 -7.30 6.37 56.52 0.36 -6.94 16 16 H -0.28 -7.72 7.11 56.52 0.40 -7.31 16 17 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 18 C 0.08 1.63 5.14 -67.93 -0.35 1.28 16 19 C -0.18 -3.42 9.81 -26.73 -0.26 -3.68 16 20 C -0.19 -3.53 10.37 -26.73 -0.28 -3.81 16 21 N -0.26 -4.75 8.92 33.41 0.30 -4.46 16 22 N -0.39 -5.55 6.52 33.50 0.22 -5.33 16 23 H 0.43 4.70 5.69 -190.44 -1.08 3.62 16 24 C -0.07 -0.68 4.75 -104.62 -0.50 -1.18 16 25 C -0.13 -1.13 7.55 -39.58 -0.30 -1.43 16 26 C -0.11 -0.85 10.05 -39.59 -0.40 -1.25 16 27 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 28 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 29 C -0.11 -0.96 9.67 -39.59 -0.38 -1.34 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.47 7.38 -51.93 -0.38 0.08 16 33 H 0.16 2.67 8.06 -52.49 -0.42 2.25 16 34 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 35 H 0.12 2.51 5.95 -51.93 -0.31 2.20 16 36 H 0.11 2.35 6.79 -51.93 -0.35 2.00 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.12 0.86 5.98 -52.48 -0.31 0.55 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.91 7.95 -52.48 -0.42 0.49 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -35.54 358.00 -9.31 -44.85 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.65 Total: 3.95 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -4.96 Total: -12.65 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 1.03 Total: -47.14 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.19 Total: 21.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.54 -9.31 -44.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528175246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.458 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds