Wall clock time and date at job start Tue Mar 31 2020 14:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46851 * 2 1 4 4 O 1.42901 * 109.47050 * 120.00167 * 2 1 3 5 5 C 1.36039 * 116.99378 * 149.99971 * 4 2 1 6 6 C 1.38603 * 120.08472 * 269.97364 * 5 4 2 7 7 Cl 1.73605 * 119.99855 * 0.04741 * 6 5 4 8 8 C 1.38375 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.38260 * 120.16152 * 0.02562 * 8 6 5 10 10 C 1.38207 * 120.17316 * 359.70453 * 9 8 6 11 11 C 1.38759 * 119.99445 * 0.55097 * 10 9 8 12 12 N 1.39975 * 120.08005 * 179.75016 * 11 10 9 13 13 C 1.46496 * 119.99885 * 359.72091 * 12 11 10 14 14 C 1.53006 * 109.46995 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46626 * 299.99666 * 14 13 12 16 16 C 1.52997 * 109.47164 * 59.99963 * 14 13 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 14 13 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 14 20 20 C 1.37887 * 120.00079 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47011 * 90.00204 * 22 20 18 24 24 H 1.48498 * 109.47112 * 210.00472 * 22 20 18 25 25 H 1.48499 * 109.47134 * 330.00583 * 22 20 18 26 26 H 1.08995 * 109.46546 * 299.99628 * 1 2 3 27 27 H 1.08994 * 109.47124 * 59.99854 * 1 2 3 28 28 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46534 * 239.99989 * 2 1 3 30 30 H 1.09003 * 109.47203 * 299.99953 * 3 2 1 31 31 H 1.08997 * 109.47660 * 60.00156 * 3 2 1 32 32 H 1.09005 * 109.47137 * 180.02562 * 3 2 1 33 33 H 1.07995 * 119.91725 * 179.97438 * 8 6 5 34 34 H 1.08007 * 119.91054 * 179.97438 * 9 8 6 35 35 H 1.07999 * 120.00525 * 180.29822 * 10 9 8 36 36 H 0.96998 * 119.99923 * 179.72522 * 12 11 10 37 37 H 1.09001 * 109.47464 * 60.00596 * 13 12 11 38 38 H 1.09001 * 109.47459 * 300.00312 * 13 12 11 39 39 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 40 40 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 42 42 H 1.09001 * 109.47375 * 59.99966 * 16 14 13 43 43 H 1.09002 * 109.46777 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.47140 * 299.99948 * 16 14 13 45 45 H 1.09001 * 109.47289 * 299.99953 * 17 14 13 46 46 H 1.09004 * 109.47261 * 59.99697 * 17 14 13 47 47 H 0.96999 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2020 -1.3147 1.0648 6 6 3.2472 -2.6416 0.6671 7 17 1.7769 -3.4874 0.2970 8 6 4.4642 -3.2921 0.5645 9 6 5.6371 -2.6218 0.8585 10 6 5.6005 -1.2969 1.2504 11 6 4.3835 -0.6395 1.3607 12 7 4.3440 0.7007 1.7625 13 6 5.5881 1.4093 2.0731 14 6 5.2669 2.8478 2.4834 15 6 4.5490 3.5577 1.3338 16 6 4.3644 2.8364 3.7188 17 6 6.5661 3.5880 2.8071 18 6 6.2498 5.0051 3.2107 19 1 5.2246 5.3438 3.2343 20 6 7.2693 5.8690 3.5508 21 7 8.5177 5.4564 3.5225 22 14 6.8771 7.6253 4.0517 23 1 6.6699 7.6865 5.5209 24 1 8.0069 8.5118 3.6737 25 1 5.6427 8.0738 3.3587 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 4.4978 -4.3262 0.2548 34 1 6.5848 -3.1336 0.7774 35 1 6.5188 -0.7745 1.4747 36 1 3.4930 1.1603 1.8353 37 1 6.2312 1.4171 1.1930 38 1 6.0994 0.9037 2.8922 39 1 3.6233 3.0306 1.1027 40 1 4.3205 4.5827 1.6260 41 1 5.1919 3.5659 0.4537 42 1 4.8759 2.3306 4.5378 43 1 4.1352 3.8612 4.0108 44 1 3.4388 2.3092 3.4877 45 1 7.0781 3.0824 3.6259 46 1 7.2088 3.5962 1.9267 47 1 9.2349 6.0642 3.7614 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539922272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:09 Heat of formation + Delta-G solvation = -40.489548 kcal Electronic energy + Delta-G solvation = -26372.626399 eV Core-core repulsion = 22773.747982 eV Total energy + Delta-G solvation = -3598.878417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35700 -37.94478 -37.51857 -36.45249 -34.23853 -33.16737 -32.27596 -29.80133 -28.89481 -27.58777 -26.96673 -26.49040 -25.78864 -23.19002 -22.84205 -21.45092 -21.20785 -18.67062 -17.86875 -16.87946 -16.57563 -16.20514 -15.61486 -14.94975 -14.70015 -14.61840 -14.38590 -14.30459 -13.85186 -13.38800 -13.18909 -13.09222 -12.89224 -12.70405 -12.39361 -12.35961 -12.11598 -12.03202 -11.92891 -11.64204 -11.40509 -11.18166 -11.05288 -11.00981 -10.86604 -10.80778 -10.67308 -10.42458 -10.29142 -10.05210 -9.93741 -9.73839 -9.23475 -8.98110 -8.63676 -8.40334 -7.29020 -6.04872 -4.05797 1.05915 1.44136 2.08021 3.28028 3.33738 3.35205 3.37056 3.64003 3.85653 4.41792 4.77826 4.87575 4.90124 5.06397 5.14967 5.19804 5.29829 5.31037 5.43061 5.45927 5.47597 5.53256 5.66248 5.71343 5.73214 5.76467 6.01997 6.05169 6.06892 6.10439 6.13300 6.17181 6.25682 6.33957 6.42064 6.56230 6.60016 6.62492 6.99317 7.03117 7.05208 7.26268 7.56945 7.59286 7.69471 7.88198 7.93727 8.36214 8.98709 9.57655 11.06622 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.003063 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.187401 B = 9138.246154 C =10176.737167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 C -0.192 4.192 4 O -0.315 6.315 5 C 0.015 3.985 6 C -0.004 4.004 7 Cl -0.069 7.069 8 C -0.174 4.174 9 C -0.061 4.061 10 C -0.189 4.189 11 C 0.224 3.776 12 N -0.728 5.728 13 C 0.127 3.873 14 C -0.070 4.070 15 C -0.133 4.133 16 C -0.127 4.127 17 C 0.038 3.962 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.407 0.593 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -15.549 -8.214 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 C -0.249 4.249 4 O -0.232 6.232 5 C -0.035 4.035 6 C -0.032 4.032 7 Cl -0.040 7.040 8 C -0.195 4.195 9 C -0.080 4.080 10 C -0.212 4.212 11 C 0.115 3.885 12 N -0.357 5.357 13 C 0.004 3.996 14 C -0.070 4.070 15 C -0.190 4.190 16 C -0.185 4.185 17 C 0.000 4.000 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.362 -15.397 -8.006 20.742 hybrid contribution -0.334 1.126 0.145 1.184 sum -11.696 -14.270 -7.861 20.056 Atomic orbital electron populations 1.21848 0.93263 1.02758 1.02581 1.22398 0.94894 0.92284 0.87686 1.22684 1.02978 0.96328 1.02921 1.86202 1.32974 1.68441 1.35553 1.17723 0.85051 0.90057 1.10661 1.21026 0.87841 0.92285 1.02003 1.98344 1.35756 1.77032 1.92897 1.20643 0.90198 1.00776 1.07891 1.20854 0.97633 0.93594 0.95906 1.20763 0.96478 0.95576 1.08366 1.18104 0.92351 0.85521 0.92485 1.45375 1.10417 1.07998 1.71889 1.21709 0.85186 0.93209 0.99514 1.20860 0.99645 0.91533 0.94996 1.21869 0.98206 1.01212 0.97686 1.21753 0.97209 1.02098 0.97392 1.19082 0.89585 0.94527 0.96798 1.21179 0.92896 0.95894 1.44972 0.92280 1.25003 0.95120 0.98496 0.95809 1.69955 0.98866 1.35722 1.48914 0.86652 0.77902 0.84948 0.78851 1.20738 1.21315 1.19933 0.91647 0.91125 0.91904 0.92137 0.91251 0.91472 0.90780 0.85339 0.85151 0.84858 0.75400 0.92306 0.92265 0.94702 0.91480 0.93472 0.93366 0.91483 0.95186 0.96415 0.96429 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 37.16 0.36 -1.03 16 2 C 0.08 0.94 3.40 -26.73 -0.09 0.85 16 3 C -0.19 -2.14 7.07 37.15 0.26 -1.87 16 4 O -0.31 -4.27 8.54 -19.86 -0.17 -4.44 16 5 C 0.01 0.20 5.57 -39.07 -0.22 -0.02 16 6 C 0.00 -0.05 6.33 -39.40 -0.25 -0.30 16 7 Cl -0.07 -0.80 28.50 -51.86 -1.48 -2.28 16 8 C -0.17 -1.94 9.82 -39.52 -0.39 -2.32 16 9 C -0.06 -0.66 10.04 -39.58 -0.40 -1.06 16 10 C -0.19 -2.39 9.31 -39.40 -0.37 -2.75 16 11 C 0.22 3.13 6.53 -83.56 -0.55 2.58 16 12 N -0.73 -10.51 3.88 -58.49 -0.23 -10.74 16 13 C 0.13 2.03 3.81 -4.04 -0.02 2.01 16 14 C -0.07 -1.28 0.54 -154.51 -0.08 -1.37 16 15 C -0.13 -2.29 8.05 37.16 0.30 -2.00 16 16 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 17 C 0.04 0.89 4.04 -27.89 -0.11 0.77 16 18 C -0.51 -13.32 7.65 -34.44 -0.26 -13.58 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 22 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.76 7.76 -51.93 -0.40 0.36 16 32 H 0.07 0.93 5.15 -51.93 -0.27 0.66 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.62 6.74 -52.49 -0.35 1.27 16 36 H 0.41 5.87 3.32 -40.82 -0.14 5.73 16 37 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 39 H 0.03 0.51 4.48 -51.93 -0.23 0.28 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 44 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -28.01 376.89 -9.42 -37.43 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.33 Total: 4.14 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.61 Total: -20.60 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.51 Total: -35.87 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.17 Total: -4.44 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.48 Total: -2.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.01 -9.42 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539922272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.060 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds