Wall clock time and date at job start Tue Mar 31 2020 14:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46851 * 2 1 4 4 O 1.42901 * 109.47050 * 120.00167 * 2 1 3 5 5 C 1.36039 * 116.99378 * 149.99971 * 4 2 1 6 6 C 1.38603 * 120.08472 * 269.97364 * 5 4 2 7 7 Cl 1.73605 * 119.99855 * 0.04741 * 6 5 4 8 8 C 1.38375 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.38260 * 120.16152 * 0.02562 * 8 6 5 10 10 C 1.38207 * 120.17316 * 359.70453 * 9 8 6 11 11 C 1.38759 * 119.99445 * 0.55097 * 10 9 8 12 12 N 1.39975 * 120.08005 * 179.75016 * 11 10 9 13 13 C 1.46496 * 119.99885 * 359.72091 * 12 11 10 14 14 C 1.53006 * 109.46995 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46626 * 299.99666 * 14 13 12 16 16 C 1.52997 * 109.47164 * 59.99963 * 14 13 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 14 13 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 14 20 20 C 1.37887 * 120.00079 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00129 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47011 * 90.00204 * 22 20 18 24 24 H 1.48498 * 109.47112 * 210.00472 * 22 20 18 25 25 H 1.48499 * 109.47134 * 330.00583 * 22 20 18 26 26 H 1.08995 * 109.46546 * 299.99628 * 1 2 3 27 27 H 1.08994 * 109.47124 * 59.99854 * 1 2 3 28 28 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46534 * 239.99989 * 2 1 3 30 30 H 1.09003 * 109.47203 * 299.99953 * 3 2 1 31 31 H 1.08997 * 109.47660 * 60.00156 * 3 2 1 32 32 H 1.09005 * 109.47137 * 180.02562 * 3 2 1 33 33 H 1.07995 * 119.91725 * 179.97438 * 8 6 5 34 34 H 1.08007 * 119.91054 * 179.97438 * 9 8 6 35 35 H 1.07999 * 120.00525 * 180.29822 * 10 9 8 36 36 H 0.96998 * 119.99923 * 179.72522 * 12 11 10 37 37 H 1.09001 * 109.47464 * 60.00596 * 13 12 11 38 38 H 1.09001 * 109.47459 * 300.00312 * 13 12 11 39 39 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 40 40 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 41 41 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 42 42 H 1.09001 * 109.47375 * 59.99966 * 16 14 13 43 43 H 1.09002 * 109.46777 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.47140 * 299.99948 * 16 14 13 45 45 H 1.09001 * 109.47289 * 299.99953 * 17 14 13 46 46 H 1.09004 * 109.47261 * 59.99697 * 17 14 13 47 47 H 0.96999 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2020 -1.3147 1.0648 6 6 3.2472 -2.6416 0.6671 7 17 1.7769 -3.4874 0.2970 8 6 4.4642 -3.2921 0.5645 9 6 5.6371 -2.6218 0.8585 10 6 5.6005 -1.2969 1.2504 11 6 4.3835 -0.6395 1.3607 12 7 4.3440 0.7007 1.7625 13 6 5.5881 1.4093 2.0731 14 6 5.2669 2.8478 2.4834 15 6 4.5490 3.5577 1.3338 16 6 4.3644 2.8364 3.7188 17 6 6.5661 3.5880 2.8071 18 6 6.2498 5.0051 3.2107 19 1 5.2246 5.3438 3.2343 20 6 7.2693 5.8690 3.5508 21 7 8.5177 5.4564 3.5225 22 14 6.8771 7.6253 4.0517 23 1 6.6699 7.6865 5.5209 24 1 8.0069 8.5118 3.6737 25 1 5.6427 8.0738 3.3587 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 4.4978 -4.3262 0.2548 34 1 6.5848 -3.1336 0.7774 35 1 6.5188 -0.7745 1.4747 36 1 3.4930 1.1603 1.8353 37 1 6.2312 1.4171 1.1930 38 1 6.0994 0.9037 2.8922 39 1 3.6233 3.0306 1.1027 40 1 4.3205 4.5827 1.6260 41 1 5.1919 3.5659 0.4537 42 1 4.8759 2.3306 4.5378 43 1 4.1352 3.8612 4.0108 44 1 3.4388 2.3092 3.4877 45 1 7.0781 3.0824 3.6259 46 1 7.2088 3.5962 1.9267 47 1 9.2349 6.0642 3.7614 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539922272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:08 Heat of formation + Delta-G solvation = -52.801878 kcal Electronic energy + Delta-G solvation = -26373.160302 eV Core-core repulsion = 22773.747982 eV Total energy + Delta-G solvation = -3599.412320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34346 -39.23420 -38.54285 -37.42815 -35.60212 -34.19823 -33.97683 -30.75567 -30.10003 -28.84630 -28.40462 -27.89237 -27.05550 -24.89109 -23.81981 -22.60675 -22.09481 -19.93368 -19.08762 -18.37000 -17.89641 -17.43992 -16.56371 -16.52931 -15.89032 -15.69507 -15.69088 -15.51451 -14.87212 -14.61509 -14.40392 -14.32170 -14.18180 -13.98098 -13.94136 -13.24704 -13.16469 -13.03749 -12.95930 -12.82768 -12.75139 -12.71477 -12.42312 -12.40833 -12.21612 -12.20177 -11.92285 -11.91413 -11.67759 -11.55266 -11.09258 -10.88436 -10.86741 -10.76283 -10.50688 -9.57159 -8.34429 -8.14623 -6.21098 0.11879 0.48926 1.14783 1.41257 1.42067 1.51703 2.38906 2.43820 2.54757 2.91459 3.20183 3.91263 3.95961 4.02348 4.04672 4.08878 4.18666 4.23839 4.28834 4.30260 4.44104 4.53482 4.68123 4.69676 4.72507 4.72843 4.84922 4.92687 4.93539 4.94913 5.08280 5.10456 5.18141 5.22140 5.25693 5.30830 5.41931 5.46813 5.49364 5.50974 5.54995 5.69073 5.79661 5.89731 6.15783 6.33880 6.59117 6.78727 6.93386 7.46229 8.97502 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.003063 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.187401 B = 9138.246154 C =10176.737167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 C -0.190 4.190 4 O -0.328 6.328 5 C 0.005 3.995 6 C -0.017 4.017 7 Cl -0.063 7.063 8 C -0.167 4.167 9 C -0.056 4.056 10 C -0.198 4.198 11 C 0.205 3.795 12 N -0.728 5.728 13 C 0.143 3.857 14 C -0.064 4.064 15 C -0.125 4.125 16 C -0.121 4.121 17 C 0.044 3.956 18 C -0.515 4.515 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.952 3.048 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.263 1.263 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.406 0.594 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.052 0.948 44 H 0.053 0.947 45 H -0.010 1.010 46 H -0.008 1.008 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 -16.386 -8.947 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 C -0.247 4.247 4 O -0.246 6.246 5 C -0.044 4.044 6 C -0.045 4.045 7 Cl -0.034 7.034 8 C -0.188 4.188 9 C -0.074 4.074 10 C -0.221 4.221 11 C 0.098 3.902 12 N -0.359 5.359 13 C 0.019 3.981 14 C -0.064 4.064 15 C -0.182 4.182 16 C -0.178 4.178 17 C 0.007 3.993 18 C -0.553 4.553 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.576 5.576 22 Si 0.778 3.222 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.187 1.187 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.245 0.755 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.009 0.991 46 H 0.011 0.989 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.896 -16.257 -8.749 22.520 hybrid contribution 0.119 1.267 0.331 1.315 sum -12.776 -14.990 -8.418 21.419 Atomic orbital electron populations 1.21850 0.91809 1.02909 1.03472 1.22518 0.95954 0.92028 0.86927 1.22653 1.01950 0.96481 1.03610 1.86174 1.32939 1.68712 1.36727 1.17862 0.85023 0.90607 1.10912 1.21210 0.88735 0.92194 1.02348 1.98343 1.35491 1.76705 1.92829 1.20982 0.89629 1.01734 1.06428 1.21189 0.98933 0.92826 0.94480 1.20952 0.96080 0.96534 1.08521 1.18263 0.93087 0.85250 0.93602 1.45103 1.09384 1.08404 1.73014 1.21346 0.85933 0.91676 0.99190 1.20670 0.97172 0.92680 0.95909 1.21780 0.99238 1.00394 0.96811 1.21665 0.97979 1.01391 0.96748 1.18928 0.91606 0.94227 0.94546 1.21583 0.93113 0.96929 1.43718 0.91589 1.25849 0.95028 1.02693 0.96177 1.70089 0.99849 1.37151 1.50484 0.85632 0.77909 0.80070 0.78572 1.20292 1.21363 1.18736 0.91821 0.89150 0.92118 0.92420 0.89595 0.91697 0.92284 0.83048 0.82167 0.84913 0.75465 0.92488 0.92851 0.91862 0.93095 0.93951 0.94105 0.92899 0.92792 0.99133 0.98931 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.56 71.99 0.69 -1.74 16 2 C 0.08 1.72 3.40 30.60 0.10 1.82 16 3 C -0.19 -3.92 7.07 71.98 0.51 -3.41 16 4 O -0.33 -8.54 8.54 -94.00 -0.80 -9.34 16 5 C 0.01 0.14 5.57 22.60 0.13 0.26 16 6 C -0.02 -0.41 6.33 22.39 0.14 -0.26 16 7 Cl -0.06 -1.35 28.50 -2.72 -0.08 -1.42 16 8 C -0.17 -3.30 9.82 22.31 0.22 -3.08 16 9 C -0.06 -1.07 10.04 22.27 0.22 -0.85 16 10 C -0.20 -4.78 9.31 22.39 0.21 -4.57 16 11 C 0.20 5.54 6.53 38.21 0.25 5.79 16 12 N -0.73 -20.60 3.88 -338.98 -1.32 -21.92 16 13 C 0.14 4.57 3.81 86.38 0.33 4.90 16 14 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 15 C -0.13 -4.28 8.05 71.98 0.58 -3.70 16 16 C -0.12 -4.27 8.05 71.98 0.58 -3.69 16 17 C 0.04 2.17 4.04 29.85 0.12 2.29 16 18 C -0.52 -27.25 7.65 25.60 0.20 -27.06 16 19 H 0.07 3.34 5.68 -2.91 -0.02 3.32 16 20 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 21 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 22 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.24 7.91 -2.39 -0.02 1.22 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.36 7.76 -2.39 -0.02 1.34 16 32 H 0.06 1.41 5.15 -2.38 -0.01 1.40 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 3.16 6.74 -2.91 -0.02 3.14 16 36 H 0.41 11.32 3.32 -92.71 -0.31 11.01 16 37 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 38 H 0.05 1.76 7.96 -2.39 -0.02 1.74 16 39 H 0.06 1.79 4.48 -2.39 -0.01 1.78 16 40 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 2.01 6.62 -2.39 -0.02 1.99 16 44 H 0.05 1.64 6.86 -2.39 -0.02 1.62 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 47 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -60.73 376.89 5.48 -55.25 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.66 Total: 22.48 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.71 Total: -35.24 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.03 Total: -76.99 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.80 Total: -9.34 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.42 kcal Total: -60.73 5.48 -55.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539922272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.452 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds