Wall clock time and date at job start Tue Mar 31 2020 14:04:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50697 * 120.00057 * 2 1
4 4 N 1.46891 * 109.47162 * 125.07471 * 3 2 1
5 5 C 1.46900 * 110.99859 * 289.14876 * 4 3 2
6 6 C 1.50701 * 109.47172 * 161.02136 * 5 4 3
7 7 C 1.38632 * 119.75071 * 273.76690 * 6 5 4
8 8 C 1.37627 * 120.24743 * 179.72446 * 7 6 5
9 9 C 1.40719 * 119.74207 * 0.56428 * 8 7 6
10 10 C 1.41391 * 120.24190 * 179.68519 * 9 8 7
11 11 H 1.08001 * 120.00006 * 153.00745 * 10 9 8
12 12 C 1.39946 * 120.00157 * 333.00962 * 10 9 8
13 13 N 1.30825 * 119.99817 * 340.42626 * 12 10 9
14 14 Si 1.86800 * 120.00377 * 160.42843 * 12 10 9
15 15 H 1.48505 * 109.47071 * 94.97850 * 14 12 10
16 16 H 1.48496 * 109.47398 * 214.98058 * 14 12 10
17 17 H 1.48500 * 109.46948 * 334.98147 * 14 12 10
18 18 C 1.40709 * 119.51179 * 359.70981 * 9 8 7
19 19 C 1.37616 * 119.74831 * 359.97438 * 18 9 8
20 20 C 1.46899 * 111.00134 * 165.19908 * 4 3 2
21 21 C 1.50699 * 109.47160 * 293.94873 * 20 4 3
22 22 C 1.38225 * 120.01013 * 104.99515 * 21 20 4
23 23 C 1.38228 * 120.02359 * 180.02562 * 22 21 20
24 24 C 1.38274 * 120.05021 * 359.97438 * 23 22 21
25 25 C 1.38169 * 120.02499 * 359.97438 * 24 23 22
26 26 C 1.38442 * 120.01458 * 285.00248 * 21 20 4
27 27 F 1.35093 * 120.02376 * 359.97438 * 26 21 20
28 28 H 1.08003 * 119.99873 * 5.12759 * 1 2 3
29 29 H 1.08000 * 120.00402 * 185.12247 * 1 2 3
30 30 H 1.07999 * 119.99849 * 179.97438 * 2 1 3
31 31 H 1.08995 * 109.47193 * 5.06793 * 3 2 1
32 32 H 1.09000 * 109.46749 * 245.07192 * 3 2 1
33 33 H 1.09002 * 109.47400 * 281.02486 * 5 4 3
34 34 H 1.09004 * 109.47375 * 41.02526 * 5 4 3
35 35 H 1.07998 * 119.87925 * 359.97383 * 7 6 5
36 36 H 1.07997 * 120.12771 * 180.27717 * 8 7 6
37 37 H 0.97000 * 120.00241 * 180.02562 * 13 12 10
38 38 H 1.08005 * 120.12838 * 179.97438 * 18 9 8
39 39 H 1.08001 * 119.87758 * 179.97438 * 19 18 9
40 40 H 1.09000 * 109.47271 * 173.95038 * 20 4 3
41 41 H 1.09001 * 109.47502 * 53.94991 * 20 4 3
42 42 H 1.07992 * 119.99195 * 0.02562 * 22 21 20
43 43 H 1.07996 * 119.97426 * 180.02562 * 23 22 21
44 44 H 1.08001 * 119.98595 * 180.02562 * 24 23 22
45 45 H 1.08002 * 120.01093 * 179.74596 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9975 1.3312 1.1334
5 6 2.2765 1.4603 2.4068
6 6 3.1723 1.0245 3.5376
7 6 3.2356 -0.3154 3.8879
8 6 4.0544 -0.7254 4.9152
9 6 4.8201 0.2228 5.6187
10 6 5.6598 -0.1859 6.6803
11 1 6.5365 0.3937 6.9292
12 6 5.3550 -1.3415 7.4084
13 7 4.1404 -1.8271 7.3865
14 14 6.6823 -2.1906 8.4118
15 1 6.6202 -1.7157 9.8174
16 1 6.4668 -3.6594 8.3755
17 1 8.0152 -1.8716 7.8400
18 6 4.7435 1.5808 5.2581
19 6 3.9228 1.9672 4.2232
20 6 3.9857 2.4068 0.9766
21 6 4.8681 2.1094 -0.2082
22 6 4.6980 2.8070 -1.3894
23 6 5.5069 2.5340 -2.4765
24 6 6.4874 1.5635 -2.3837
25 6 6.6599 0.8656 -1.2037
26 6 5.8494 1.1373 -0.1142
27 9 6.0167 0.4551 1.0398
28 1 -0.5400 0.9316 -0.0836
29 1 -0.5401 -0.9315 0.0835
30 1 1.8500 -0.9353 0.0004
31 1 1.3587 2.1315 0.0908
32 1 2.6202 1.4031 -0.9319
33 1 1.9840 2.4998 2.5549
34 1 1.3862 0.8318 2.3857
35 1 2.6432 -1.0406 3.3500
36 1 4.1057 -1.7703 5.1835
37 1 3.9290 -2.6278 7.8915
38 1 5.3265 2.3170 5.7916
39 1 3.8621 3.0090 3.9450
40 1 4.5965 2.4731 1.8769
41 1 3.4699 3.3537 0.8169
42 1 3.9329 3.5655 -1.4629
43 1 5.3736 3.0799 -3.3988
44 1 7.1191 1.3513 -3.2336
45 1 7.4231 0.1047 -1.1327
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000541280517.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:04:01
Heat of formation + Delta-G solvation = 21.672595 kcal
Electronic energy + Delta-G solvation = -27031.350074 eV
Core-core repulsion = 23314.139754 eV
Total energy + Delta-G solvation = -3717.210320 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.154 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-48.44752 -39.34304 -38.03213 -36.75884 -33.86615 -33.37976 -31.69474 -30.48124
-29.93477 -29.20455 -26.94970 -26.51402 -24.27427 -22.71627 -22.40188 -21.07059
-20.74392 -19.77400 -19.52574 -17.37874 -17.20272 -16.29736 -16.00383 -15.71768
-15.24377 -15.16925 -14.89057 -14.54507 -14.16925 -13.89410 -13.83978 -13.46652
-13.30341 -13.03035 -12.90647 -12.46183 -12.30361 -12.18522 -11.87763 -11.81514
-11.49244 -11.36810 -11.31224 -10.98909 -10.93984 -10.92222 -10.81623 -10.42623
-10.31352 -9.54817 -9.33625 -9.28843 -9.04715 -8.95089 -8.54989 -7.97297
-7.34476 -7.20693 -6.70746 -4.26546 1.16227 1.22095 2.33972 2.81958
3.11195 3.14904 3.16016 3.23708 3.57340 3.99207 4.37019 4.43589
4.70046 4.76063 4.79355 4.91646 5.09693 5.15027 5.22158 5.34959
5.50023 5.55427 5.68059 5.72046 5.79709 5.84729 5.92719 6.03859
6.08643 6.12758 6.21051 6.28472 6.33341 6.37136 6.42739 6.50877
6.71259 6.79250 6.93641 7.02721 7.14451 7.29495 7.37953 7.45912
7.46667 7.70319 7.94772 8.13083 8.22079 8.38206 8.72139 8.97276
9.06088 10.25868
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.013204 B = 0.003594 C = 0.003126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2120.084011 B = 7789.927219 C = 8955.905576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.129 4.129
3 C 0.075 3.925
4 N -0.520 5.520
5 C 0.120 3.880
6 C -0.200 4.200
7 C -0.074 4.074
8 C -0.164 4.164
9 C 0.117 3.883
10 C -0.468 4.468
11 H 0.076 0.924
12 C 0.079 3.921
13 N -0.794 5.794
14 Si 0.902 3.098
15 H -0.272 1.272
16 H -0.276 1.276
17 H -0.261 1.261
18 C -0.225 4.225
19 C -0.086 4.086
20 C 0.094 3.906
21 C -0.111 4.111
22 C -0.091 4.091
23 C -0.140 4.140
24 C -0.095 4.095
25 C -0.163 4.163
26 C 0.132 3.868
27 F -0.117 7.117
28 H 0.091 0.909
29 H 0.097 0.903
30 H 0.112 0.888
31 H 0.033 0.967
32 H 0.078 0.922
33 H 0.025 0.975
34 H 0.069 0.931
35 H 0.085 0.915
36 H 0.109 0.891
37 H 0.279 0.721
38 H 0.089 0.911
39 H 0.081 0.919
40 H 0.099 0.901
41 H 0.039 0.961
42 H 0.125 0.875
43 H 0.124 0.876
44 H 0.127 0.873
45 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.144 5.788 -17.430 18.402
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.148 4.148
3 C -0.053 4.053
4 N -0.243 5.243
5 C -0.005 4.005
6 C -0.202 4.202
7 C -0.093 4.093
8 C -0.183 4.183
9 C 0.114 3.886
10 C -0.498 4.498
11 H 0.094 0.906
12 C -0.138 4.138
13 N -0.419 5.419
14 Si 0.727 3.273
15 H -0.197 1.197
16 H -0.201 1.201
17 H -0.184 1.184
18 C -0.244 4.244
19 C -0.105 4.105
20 C -0.033 4.033
21 C -0.112 4.112
22 C -0.110 4.110
23 C -0.158 4.158
24 C -0.114 4.114
25 C -0.182 4.182
26 C 0.112 3.888
27 F -0.096 7.096
28 H 0.109 0.891
29 H 0.115 0.885
30 H 0.130 0.870
31 H 0.051 0.949
32 H 0.096 0.904
33 H 0.043 0.957
34 H 0.087 0.913
35 H 0.103 0.897
36 H 0.127 0.873
37 H 0.090 0.910
38 H 0.107 0.893
39 H 0.099 0.901
40 H 0.117 0.883
41 H 0.057 0.943
42 H 0.143 0.857
43 H 0.142 0.858
44 H 0.145 0.855
45 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -1.052 5.140 -17.254 18.034
hybrid contribution 0.146 0.111 0.709 0.733
sum -0.906 5.251 -16.545 17.381
Atomic orbital electron populations
1.23770 0.95887 1.01617 1.02834 1.22902 0.95389 0.98837 0.97638
1.21258 0.94313 0.94418 0.95261 1.62080 1.15290 1.45253 1.01707
1.20778 0.95118 0.97919 0.86722 1.18795 1.06398 0.94051 1.00918
1.20412 0.98307 0.93957 0.96652 1.21168 1.01125 0.99252 0.96747
1.17569 0.89995 0.90418 0.90594 1.19545 1.09408 1.07566 1.13299
0.90593 1.25859 0.95427 0.96375 0.96171 1.69841 1.18679 1.19433
1.33957 0.86405 0.82264 0.78803 0.79870 1.19689 1.20080 1.18443
1.20921 1.05525 0.95587 1.02393 1.20328 0.97437 0.96080 0.96642
1.20990 0.93727 0.92113 0.96498 1.19979 0.97278 0.97171 0.96784
1.20945 0.99138 0.99090 0.91828 1.21084 0.96779 0.99146 0.98787
1.20940 0.97908 0.95603 0.96922 1.21206 1.01278 1.02701 0.92992
1.17599 0.95901 0.92445 0.82876 1.91634 1.94319 1.77375 1.46231
0.89059 0.88507 0.87007 0.94923 0.90400 0.95701 0.91261 0.89726
0.87289 0.91009 0.89291 0.90107 0.88277 0.94302 0.85658 0.85797
0.85500 0.84951
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.36 14.31 29.02 0.42 -1.94 16
2 C -0.13 -1.70 8.69 -36.03 -0.31 -2.02 16
3 C 0.07 1.00 5.28 -4.98 -0.03 0.97 16
4 N -0.52 -8.33 4.37 -238.97 -1.05 -9.37 16
5 C 0.12 2.14 4.96 -4.98 -0.02 2.11 16
6 C -0.20 -4.35 5.07 -104.33 -0.53 -4.88 16
7 C -0.07 -1.78 9.68 -39.66 -0.38 -2.16 16
8 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16
9 C 0.12 3.18 5.54 -106.83 -0.59 2.59 16
10 C -0.47 -12.77 9.03 -37.74 -0.34 -13.11 16
11 H 0.08 2.00 7.92 -52.49 -0.42 1.59 16
12 C 0.08 2.04 5.08 -17.34 -0.09 1.96 16
13 N -0.79 -21.03 11.24 55.55 0.62 -20.41 16
14 Si 0.90 19.13 29.60 -169.99 -5.03 14.10 16
15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16
17 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16
18 C -0.22 -5.62 9.80 -38.88 -0.38 -6.00 16
19 C -0.09 -1.93 8.28 -39.66 -0.33 -2.26 16
20 C 0.09 1.42 4.60 -4.98 -0.02 1.39 16
21 C -0.11 -1.53 4.48 -104.55 -0.47 -2.00 16
22 C -0.09 -0.99 8.70 -39.59 -0.34 -1.34 16
23 C -0.14 -1.33 10.05 -39.57 -0.40 -1.72 16
24 C -0.10 -0.94 10.04 -39.59 -0.40 -1.34 16
25 C -0.16 -2.00 10.03 -39.52 -0.40 -2.39 16
26 C 0.13 2.00 7.25 -39.42 -0.29 1.72 16
27 F -0.12 -2.23 16.76 2.25 0.04 -2.19 16
28 H 0.09 0.97 7.86 -52.48 -0.41 0.55 16
29 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16
30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
31 H 0.03 0.41 7.73 -51.93 -0.40 0.00 16
32 H 0.08 0.98 6.17 -51.93 -0.32 0.66 16
33 H 0.02 0.42 7.92 -51.93 -0.41 0.01 16
34 H 0.07 1.21 7.05 -51.93 -0.37 0.85 16
35 H 0.08 1.90 8.06 -52.49 -0.42 1.47 16
36 H 0.11 3.01 6.42 -52.49 -0.34 2.67 16
37 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16
38 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16
39 H 0.08 1.60 7.91 -52.49 -0.42 1.18 16
40 H 0.10 1.75 6.08 -51.93 -0.32 1.43 16
41 H 0.04 0.51 7.93 -51.93 -0.41 0.10 16
42 H 0.13 1.11 8.00 -52.49 -0.42 0.69 16
43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
45 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16
LS Contribution 378.52 15.07 5.70 5.70
Total: -1.00 -28.70 378.52 -11.27 -39.97
By element:
Atomic # 1 Polarization: 13.63 SS G_CDS: -6.32 Total: 7.31 kcal
Atomic # 6 Polarization: -29.88 SS G_CDS: -5.24 Total: -35.12 kcal
Atomic # 7 Polarization: -29.36 SS G_CDS: -0.42 Total: -29.78 kcal
Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal
Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -28.70 -11.27 -39.97 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000541280517.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.642 kcal
(2) G-P(sol) polarization free energy of solvation -28.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds