Wall clock time and date at job start Tue Mar 31 2020 15:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47409 * 2 1 4 4 C 1.50698 * 109.47038 * 239.99573 * 2 1 3 5 5 C 1.38258 * 119.94461 * 26.04465 * 4 2 1 6 6 C 1.38151 * 120.05702 * 180.25314 * 5 4 2 7 7 C 1.38731 * 119.93891 * 359.46952 * 6 5 4 8 8 O 1.35905 * 120.05410 * 180.29960 * 7 6 5 9 9 C 1.42895 * 116.99782 * 179.97438 * 8 7 6 10 10 F 1.39899 * 109.47362 * 299.99738 * 9 8 7 11 11 F 1.39903 * 109.47353 * 60.00174 * 9 8 7 12 12 C 1.38736 * 119.89276 * 0.26807 * 7 6 5 13 13 C 1.38140 * 119.94007 * 0.02562 * 12 7 6 14 14 N 1.46900 * 109.46990 * 119.99664 * 2 1 3 15 15 C 1.46853 * 111.00028 * 54.08717 * 14 2 1 16 16 C 1.53034 * 109.52351 * 174.16213 * 15 14 2 17 17 C 1.53116 * 109.28132 * 59.17897 * 16 15 14 18 18 C 1.50693 * 109.52518 * 182.43967 * 17 16 15 19 19 H 1.08003 * 120.00081 * 119.68359 * 18 17 16 20 20 C 1.37883 * 120.00039 * 299.68351 * 18 17 16 21 21 N 1.31508 * 119.99671 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00062 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47119 * 89.99585 * 22 20 18 24 24 H 1.48499 * 109.47059 * 210.00287 * 22 20 18 25 25 H 1.48502 * 109.46939 * 329.99857 * 22 20 18 26 26 C 1.53126 * 109.16060 * 302.34476 * 17 16 15 27 27 C 1.46855 * 111.00091 * 289.87711 * 14 2 1 28 28 H 1.08995 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46752 * 300.00668 * 1 2 3 30 30 H 1.08997 * 109.46619 * 59.99982 * 1 2 3 31 31 H 1.07999 * 119.97697 * 0.02562 * 5 4 2 32 32 H 1.07993 * 120.03217 * 179.73850 * 6 5 4 33 33 H 1.09005 * 109.47070 * 180.02562 * 9 8 7 34 34 H 1.07991 * 120.03139 * 180.02562 * 12 7 6 35 35 H 1.08000 * 119.97252 * 179.97438 * 13 12 7 36 36 H 1.09003 * 109.45614 * 294.17916 * 15 14 2 37 37 H 1.08998 * 109.45847 * 54.13995 * 15 14 2 38 38 H 1.08997 * 109.49930 * 299.23498 * 16 15 14 39 39 H 1.08999 * 109.50107 * 179.11611 * 16 15 14 40 40 H 1.09003 * 109.52532 * 62.24990 * 17 16 15 41 41 H 0.97007 * 119.99582 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.50026 * 297.71421 * 26 17 16 43 43 H 1.08999 * 109.50238 * 177.59450 * 26 17 16 44 44 H 1.08996 * 109.45748 * 305.85313 * 27 14 2 45 45 H 1.09000 * 109.46106 * 65.82461 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.2476 -0.7598 -2.3676 6 6 1.7036 -1.4150 -3.4951 7 6 2.9547 -2.0143 -3.4892 8 8 3.4081 -2.6542 -4.5991 9 6 4.7056 -3.2478 -4.5211 10 9 5.6551 -2.2586 -4.2434 11 9 4.7194 -4.2067 -3.5024 12 6 3.7426 -1.9588 -2.3486 13 6 3.2794 -1.3076 -1.2218 14 7 2.0197 -0.6924 1.1995 15 6 1.4369 -2.0361 1.3062 16 6 2.0769 -2.7793 2.4810 17 6 1.8313 -1.9923 3.7712 18 6 2.5103 -2.6881 4.9226 19 1 3.2749 -2.1761 5.4880 20 6 2.1554 -3.9785 5.2543 21 7 1.2248 -4.6022 4.5655 22 14 2.9976 -4.8414 6.6811 23 1 2.2448 -4.5768 7.9335 24 1 3.0329 -6.3036 6.4241 25 1 4.3847 -4.3296 6.8199 26 6 2.4051 -0.5811 3.6160 27 6 1.7556 0.0984 2.4084 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 0.2757 -0.2888 -2.3734 32 1 1.0885 -1.4568 -4.3818 33 1 4.9451 -3.7239 -5.4720 34 1 4.7170 -2.4242 -2.3417 35 1 3.8921 -1.2645 -0.3334 36 1 0.3625 -1.9539 1.4703 37 1 1.6222 -2.5866 0.3838 38 1 3.1493 -2.8739 2.3109 39 1 1.6329 -3.7708 2.5696 40 1 0.7599 -1.9309 3.9622 41 1 0.9749 -5.5099 4.7991 42 1 3.4828 -0.6412 3.4639 43 1 2.1957 -0.0022 4.5155 44 1 2.1724 1.0981 2.2865 45 1 0.6797 0.1705 2.5674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543810507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:19 Heat of formation + Delta-G solvation = -120.661290 kcal Electronic energy + Delta-G solvation = -28337.578105 eV Core-core repulsion = 24183.426500 eV Total energy + Delta-G solvation = -4154.151605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.52987 -47.52274 -40.24040 -38.92822 -37.23233 -34.51448 -32.23544 -31.10992 -30.03964 -29.76489 -28.35534 -26.40506 -25.54444 -23.51686 -22.68567 -22.14392 -21.73057 -20.07709 -19.10785 -18.32772 -18.18026 -18.09148 -16.38337 -16.25579 -15.84325 -15.33641 -14.76848 -14.67579 -14.52260 -14.26964 -14.09747 -14.02335 -13.83530 -13.64187 -13.45481 -13.11305 -13.07797 -12.74397 -12.39677 -12.38418 -12.12006 -11.91346 -11.63935 -11.51563 -11.22534 -10.94140 -10.82977 -10.76347 -10.67489 -10.39846 -10.10319 -9.88737 -9.38854 -8.94477 -8.92978 -8.66555 -8.25773 -8.21687 -7.70868 -5.93876 -3.99021 1.32483 1.42770 2.39375 3.27683 3.33342 3.40207 3.43749 3.73444 4.07099 4.38329 4.43088 4.48322 4.84581 4.86310 4.90753 5.24842 5.30242 5.36227 5.38081 5.47576 5.63284 5.69897 5.83222 5.84849 6.01281 6.05088 6.08524 6.23128 6.26643 6.35466 6.38329 6.43860 6.57378 6.66681 6.68134 6.74050 6.89735 7.08831 7.12630 7.20914 7.49239 7.65465 7.73659 7.86890 8.08968 8.20609 8.52345 9.04732 9.65282 11.12215 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003381 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.821300 B = 8279.566001 C = 9622.307903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.118 3.882 3 H 0.087 0.913 4 C -0.090 4.090 5 C -0.089 4.089 6 C -0.139 4.139 7 C 0.093 3.907 8 O -0.325 6.325 9 C 0.411 3.589 10 F -0.200 7.200 11 F -0.197 7.197 12 C -0.192 4.192 13 C -0.050 4.050 14 N -0.526 5.526 15 C 0.056 3.944 16 C -0.103 4.103 17 C 0.049 3.951 18 C -0.510 4.510 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.106 4.106 27 C 0.060 3.940 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.178 0.822 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.026 0.974 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.019 0.981 41 H 0.259 0.741 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 6.671 -19.801 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.010 3.990 3 H 0.105 0.895 4 C -0.091 4.091 5 C -0.108 4.108 6 C -0.158 4.158 7 C 0.050 3.950 8 O -0.243 6.243 9 C 0.321 3.679 10 F -0.182 7.182 11 F -0.178 7.178 12 C -0.210 4.210 13 C -0.069 4.069 14 N -0.250 5.250 15 C -0.071 4.071 16 C -0.141 4.141 17 C 0.030 3.970 18 C -0.549 4.549 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.144 4.144 27 C -0.068 4.068 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.195 0.805 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.621 6.415 -19.972 21.140 hybrid contribution -0.223 -0.591 1.024 1.203 sum 2.399 5.824 -18.948 19.967 Atomic orbital electron populations 1.22526 0.97306 1.02815 1.01792 1.20514 0.92530 0.97174 0.88817 0.89528 1.19868 0.94680 0.99710 0.94821 1.20940 0.99637 0.98376 0.91803 1.20299 0.93942 1.01651 0.99885 1.18868 0.94766 0.95903 0.85449 1.86567 1.32508 1.68242 1.36970 1.23293 0.76321 0.77345 0.90925 1.93097 1.65738 1.64157 1.95179 1.93126 1.95802 1.64361 1.64557 1.21564 1.00990 1.04868 0.93598 1.21008 0.95327 0.93401 0.97135 1.62200 1.58398 1.03314 1.01108 1.22294 0.96378 0.88374 1.00059 1.21652 0.98932 1.00980 0.92577 1.18670 0.95801 0.89320 0.93174 1.21215 1.20938 0.98596 1.14103 0.92818 1.24960 0.95080 0.97471 0.96455 1.69879 1.30737 1.12642 1.39830 0.86655 0.80030 0.78794 0.82868 1.20840 1.21322 1.19964 1.21677 1.00044 0.98703 0.93961 1.22124 0.98082 0.95818 0.90748 0.91664 0.92175 0.92346 0.85020 0.85322 0.80543 0.85212 0.83982 0.95565 0.92605 0.93996 0.89103 0.96254 0.93149 0.92536 0.93266 0.92506 0.95497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 7.63 37.16 0.28 -2.09 16 2 C 0.12 1.66 2.72 -68.86 -0.19 1.47 16 3 H 0.09 1.13 7.98 -51.93 -0.41 0.72 16 4 C -0.09 -1.25 4.55 -104.60 -0.48 -1.73 16 5 C -0.09 -1.08 9.13 -39.61 -0.36 -1.45 16 6 C -0.14 -1.68 9.99 -39.43 -0.39 -2.08 16 7 C 0.09 1.22 6.48 -39.22 -0.25 0.97 16 8 O -0.32 -3.65 10.43 -19.44 -0.20 -3.85 16 9 C 0.41 3.59 5.97 101.05 0.60 4.19 16 10 F -0.20 -2.07 15.58 2.25 0.04 -2.04 16 11 F -0.20 -2.22 15.58 2.25 0.04 -2.19 16 12 C -0.19 -2.71 8.26 -39.43 -0.33 -3.03 16 13 C -0.05 -0.75 8.56 -39.61 -0.34 -1.09 16 14 N -0.53 -8.97 3.69 -228.07 -0.84 -9.81 16 15 C 0.06 1.09 4.42 -3.83 -0.02 1.08 16 16 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 17 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 18 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 19 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 21 N -0.89 -25.59 11.37 55.43 0.63 -24.96 16 22 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.11 -2.20 5.32 -26.65 -0.14 -2.34 16 27 C 0.06 1.04 5.13 -3.83 -0.02 1.02 16 28 H 0.06 0.92 6.46 -51.93 -0.34 0.58 16 29 H 0.06 0.78 6.82 -51.93 -0.35 0.43 16 30 H 0.06 0.60 6.55 -51.93 -0.34 0.26 16 31 H 0.13 1.32 6.06 -52.49 -0.32 1.00 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.18 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.13 1.79 5.10 -52.49 -0.27 1.52 16 35 H 0.14 2.24 7.53 -52.49 -0.40 1.85 16 36 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 37 H 0.06 1.07 6.64 -51.93 -0.34 0.73 16 38 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 45 H 0.03 0.47 6.88 -51.93 -0.36 0.11 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -30.00 352.43 -8.69 -38.69 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.28 Total: 1.79 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -2.35 Total: -19.40 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.21 Total: -34.77 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.07 Total: -4.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.00 -8.69 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543810507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.971 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds