Wall clock time and date at job start Tue Mar 31 2020 14:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.09002 * 109.47506 * 181.75636 * 3 2 1 5 5 C 1.50708 * 109.47313 * 301.75645 * 3 2 1 6 6 H 1.07997 * 120.00322 * 114.89454 * 5 3 2 7 7 C 1.37883 * 119.99396 * 294.89942 * 5 3 2 8 8 N 1.31508 * 120.00255 * 355.03648 * 7 5 3 9 9 Si 1.86801 * 119.99608 * 175.04555 * 7 5 3 10 10 H 1.48499 * 109.46679 * 269.99670 * 9 7 5 11 11 H 1.48502 * 109.47210 * 29.99415 * 9 7 5 12 12 H 1.48496 * 109.47381 * 149.99787 * 9 7 5 13 13 N 1.46897 * 109.47504 * 61.75527 * 3 2 1 14 14 C 1.46900 * 111.00142 * 89.09249 * 13 3 2 15 15 C 1.50698 * 109.47311 * 185.04387 * 14 13 3 16 16 C 1.50699 * 119.99786 * 80.75196 * 15 14 13 17 17 C 1.32618 * 120.00423 * 260.75971 * 15 14 13 18 18 C 1.47733 * 119.99512 * 7.12653 * 17 15 14 19 19 C 1.39511 * 120.16928 * 41.41937 * 18 17 15 20 20 C 1.37950 * 119.90864 * 179.97438 * 19 18 17 21 21 C 1.38417 * 120.26670 * 0.02562 * 20 19 18 22 22 C 1.38205 * 120.33981 * 359.97438 * 21 20 19 23 23 C 1.38546 * 120.08456 * 359.70223 * 22 21 20 24 24 O 1.35830 * 120.13113 * 180.27384 * 23 22 21 25 25 C 1.42906 * 117.00068 * 0.30436 * 24 23 22 26 26 F 1.39899 * 109.46464 * 299.99668 * 25 24 23 27 27 F 1.39898 * 109.46983 * 59.99246 * 25 24 23 28 28 H 1.09002 * 109.47329 * 184.45359 * 1 2 3 29 29 H 1.09002 * 109.46845 * 304.45188 * 1 2 3 30 30 H 1.09000 * 109.47381 * 64.45460 * 1 2 3 31 31 H 1.08998 * 109.47291 * 240.00323 * 2 1 3 32 32 H 1.09003 * 109.47262 * 120.00050 * 2 1 3 33 33 H 0.96999 * 120.00330 * 356.29376 * 8 7 5 34 34 H 1.00901 * 110.99699 * 325.14362 * 13 3 2 35 35 H 1.08992 * 109.47053 * 305.04912 * 14 13 3 36 36 H 1.09003 * 109.46693 * 65.04947 * 14 13 3 37 37 H 1.09002 * 109.46672 * 90.00214 * 16 15 14 38 38 H 1.09004 * 109.47087 * 209.99901 * 16 15 14 39 39 H 1.08999 * 109.47496 * 330.00098 * 16 15 14 40 40 H 1.07999 * 120.00154 * 187.13759 * 17 15 14 41 41 H 1.08001 * 120.04585 * 359.97438 * 19 18 17 42 42 H 1.08004 * 119.87078 * 179.97438 * 20 19 18 43 43 H 1.07996 * 119.83164 * 179.97438 * 21 20 19 44 44 H 1.07996 * 119.95271 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47314 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0315 5 6 1.5024 2.1654 -1.2082 6 1 0.8185 2.9918 -1.0830 7 6 1.8837 1.7715 -2.4733 8 7 2.7901 0.8307 -2.6239 9 14 1.1129 2.5747 -3.9734 10 1 -0.0998 1.8163 -4.3726 11 1 0.7369 3.9739 -3.6476 12 1 2.0889 2.5723 -5.0926 13 7 1.5853 2.1227 1.2200 14 6 2.5512 1.9456 2.3126 15 6 1.9956 2.5487 3.5770 16 6 0.9994 1.7783 4.4047 17 6 2.3832 3.7573 3.9612 18 6 3.2349 4.5765 3.0746 19 6 2.9829 4.6184 1.7030 20 6 3.7813 5.3855 0.8801 21 6 4.8325 6.1140 1.4095 22 6 5.0917 6.0802 2.7666 23 6 4.2948 5.3199 3.6072 24 8 4.5453 5.2904 4.9419 25 6 5.6439 6.0735 5.4133 26 9 6.8235 5.6387 4.7997 27 9 5.4248 7.4195 5.1014 28 1 -0.3634 -1.0246 0.0798 29 1 -0.3633 0.5814 0.8474 30 1 -0.3634 0.4431 -0.9272 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2294 0.4515 -1.8467 34 1 0.6683 1.8017 1.4926 35 1 2.7341 0.8823 2.4670 36 1 3.4869 2.4415 2.0542 37 1 1.5290 1.1747 5.1418 38 1 0.3351 2.4754 4.9155 39 1 0.4135 1.1276 3.7555 40 1 2.0763 4.1427 4.9223 41 1 2.1639 4.0511 1.2861 42 1 3.5859 5.4172 -0.1816 43 1 5.4533 6.7118 0.7588 44 1 5.9137 6.6507 3.1730 45 1 5.7331 5.9610 6.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566592943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:12 Heat of formation + Delta-G solvation = -123.894210 kcal Electronic energy + Delta-G solvation = -28424.207275 eV Core-core repulsion = 24269.915481 eV Total energy + Delta-G solvation = -4154.291795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.30729 -48.30943 -41.13039 -39.26155 -38.21191 -36.71291 -34.08780 -32.34829 -31.86375 -31.12767 -28.21535 -27.69767 -26.85897 -25.83336 -25.24735 -23.44638 -22.96559 -21.41493 -20.02348 -19.51046 -18.97009 -18.88035 -18.48596 -17.25831 -17.07347 -16.30167 -16.09129 -15.92726 -15.66430 -15.49739 -15.36685 -15.06447 -14.94139 -14.69324 -14.66293 -14.53954 -14.26187 -13.96614 -13.87453 -13.63079 -13.40435 -13.12512 -13.08566 -12.98104 -12.78917 -12.61748 -12.42446 -12.19245 -11.94386 -11.89057 -11.82374 -11.72523 -11.54311 -10.60165 -10.49227 -10.36320 -9.59299 -9.11456 -8.88250 -8.43381 -6.14266 0.05495 0.39300 1.37110 1.57403 1.64096 1.64464 1.81365 2.55858 2.63015 2.79490 3.31667 3.51340 3.62958 3.70157 3.70623 3.89231 3.99338 4.10823 4.22997 4.27771 4.35939 4.40060 4.46705 4.53983 4.56808 4.73572 4.75127 4.81024 4.90785 4.97096 5.07826 5.12490 5.14845 5.21441 5.24082 5.37677 5.45276 5.55261 5.56350 5.68762 5.79938 5.98184 6.03044 6.14318 6.26685 6.59120 6.76808 6.84006 7.61158 8.91366 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.003722 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.924332 B = 7520.899265 C = 8802.682109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.144 4.144 3 C 0.210 3.790 4 H -0.013 1.013 5 C -0.563 4.563 6 H 0.048 0.952 7 C -0.028 4.028 8 N -0.944 5.944 9 Si 1.106 2.894 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.292 1.292 13 N -0.663 5.663 14 C 0.090 3.910 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.087 4.087 19 C -0.084 4.084 20 C -0.161 4.161 21 C -0.088 4.088 22 C -0.207 4.207 23 C 0.101 3.899 24 O -0.321 6.321 25 C 0.403 3.597 26 F -0.212 7.212 27 F -0.210 7.210 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.256 0.744 34 H 0.337 0.663 35 H 0.023 0.977 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.119 0.881 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 8.469 19.048 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.184 4.184 3 C 0.101 3.899 4 H 0.005 0.995 5 C -0.602 4.602 6 H 0.066 0.934 7 C -0.225 4.225 8 N -0.583 5.583 9 Si 0.931 3.069 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.219 1.219 13 N -0.295 5.295 14 C -0.039 4.039 15 C -0.111 4.111 16 C -0.166 4.166 17 C -0.129 4.129 18 C -0.087 4.087 19 C -0.102 4.102 20 C -0.180 4.180 21 C -0.106 4.106 22 C -0.226 4.226 23 C 0.058 3.942 24 O -0.239 6.239 25 C 0.314 3.686 26 F -0.194 7.194 27 F -0.192 7.192 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.156 0.844 41 H 0.182 0.818 42 H 0.138 0.862 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.937 8.968 17.337 19.615 hybrid contribution 0.689 -0.858 1.183 1.616 sum 2.627 8.110 18.520 20.388 Atomic orbital electron populations 1.21456 0.94749 1.00021 1.01499 1.22067 0.97746 0.99850 0.98754 1.19093 0.92737 0.89380 0.88714 0.99469 1.22054 1.28942 1.17399 0.91812 0.93365 1.26824 0.95987 0.96097 1.03627 1.70877 1.26008 1.27730 1.33648 0.83048 0.75423 0.75683 0.72795 1.20310 1.19909 1.21880 1.60731 1.04930 1.60752 1.03038 1.21016 0.96059 0.97123 0.89697 1.22121 0.97860 0.95595 0.95492 1.20800 0.96827 1.00022 0.98908 1.21326 0.99099 0.93723 0.98734 1.18580 0.96332 1.00257 0.93553 1.22478 1.00531 0.95494 0.91732 1.21312 0.97114 0.99031 1.00497 1.21250 0.96693 0.98009 0.94628 1.21509 1.02304 1.03762 0.95003 1.19024 0.95929 0.97370 0.81907 1.86570 1.49437 1.66227 1.21671 1.24330 0.73035 0.72276 0.98927 1.93071 1.50313 1.89315 1.86731 1.93071 1.94108 1.36882 1.95103 0.93121 0.92397 0.93738 0.94310 0.94696 0.93299 0.84241 0.95856 0.92917 0.90190 0.89965 0.91892 0.84405 0.81824 0.86246 0.83763 0.84224 0.74746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 9.41 71.98 0.68 -3.94 16 2 C -0.14 -6.41 5.49 30.59 0.17 -6.24 16 3 C 0.21 10.03 1.96 44.17 0.09 10.12 16 4 H -0.01 -0.69 7.22 -2.39 -0.02 -0.71 16 5 C -0.56 -29.89 7.51 25.60 0.19 -29.70 16 6 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 7 C -0.03 -1.52 5.28 84.66 0.45 -1.07 16 8 N -0.94 -56.15 12.93 21.45 0.28 -55.87 16 9 Si 1.11 50.04 29.91 68.60 2.05 52.09 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 N -0.66 -26.19 3.96 -499.47 -1.98 -28.17 16 14 C 0.09 3.20 4.57 85.56 0.39 3.59 16 15 C -0.11 -3.15 5.44 -17.61 -0.10 -3.24 16 16 C -0.11 -2.32 10.04 71.24 0.72 -1.60 16 17 C -0.11 -3.14 8.92 23.62 0.21 -2.93 16 18 C -0.09 -2.85 4.98 -20.03 -0.10 -2.95 16 19 C -0.08 -3.13 7.60 22.51 0.17 -2.96 16 20 C -0.16 -5.75 10.03 22.24 0.22 -5.52 16 21 C -0.09 -2.68 10.03 22.30 0.22 -2.46 16 22 C -0.21 -6.09 8.25 22.34 0.18 -5.90 16 23 C 0.10 3.04 6.49 22.77 0.15 3.19 16 24 O -0.32 -7.63 9.88 -91.64 -0.91 -8.54 16 25 C 0.40 6.50 5.98 113.37 0.68 7.18 16 26 F -0.21 -4.39 15.57 44.97 0.70 -3.69 16 27 F -0.21 -4.08 15.60 44.97 0.70 -3.38 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.97 6.13 -2.39 -0.01 1.95 16 30 H 0.04 1.91 7.33 -2.39 -0.02 1.90 16 31 H 0.04 1.96 6.20 -2.39 -0.01 1.95 16 32 H 0.03 1.41 7.65 -2.39 -0.02 1.39 16 33 H 0.26 15.49 5.94 -92.71 -0.55 14.94 16 34 H 0.34 12.32 6.08 -89.69 -0.55 11.77 16 35 H 0.02 0.84 7.62 -2.39 -0.02 0.82 16 36 H 0.05 2.13 5.82 -2.39 -0.01 2.12 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.46 8.07 -2.38 -0.02 1.44 16 39 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 40 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.16 6.73 4.89 -2.91 -0.01 6.72 16 42 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.14 3.63 5.10 -2.91 -0.01 3.62 16 45 H 0.24 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -65.73 363.65 5.86 -59.87 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.69 Total: 32.15 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 4.32 Total: -44.46 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -1.70 Total: -84.04 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.91 Total: -8.54 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.40 Total: -7.07 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -65.73 5.86 -59.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566592943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.024 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds