Wall clock time and date at job start Tue Mar 31 2020 14:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99592 * 2 1 4 4 N 1.46506 * 109.46597 * 125.00155 * 3 2 1 5 5 C 1.46500 * 120.00028 * 269.99601 * 4 3 2 6 6 C 1.50698 * 109.46961 * 270.00653 * 5 4 3 7 7 H 1.07995 * 120.00668 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99734 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00258 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00059 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46777 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47185 * 119.99664 * 10 8 6 13 13 H 1.48502 * 109.47002 * 240.00033 * 10 8 6 14 14 C 1.34770 * 119.99956 * 90.00236 * 4 3 2 15 15 O 1.21286 * 120.00357 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00182 * 359.97438 * 14 4 3 17 17 C 1.50705 * 109.47269 * 180.02562 * 16 14 4 18 18 C 1.39922 * 125.87883 * 124.97735 * 17 16 14 19 19 C 1.35319 * 107.92762 * 179.76950 * 18 17 16 20 20 N 1.35222 * 107.71676 * 0.36926 * 19 18 17 21 21 C 1.40180 * 126.05583 * 179.90121 * 20 19 18 22 22 C 1.38835 * 120.06644 * 179.70997 * 21 20 19 23 23 C 1.38125 * 119.93500 * 179.97438 * 22 21 20 24 24 C 1.38282 * 120.06295 * 359.97438 * 23 22 21 25 25 C 1.38280 * 120.13446 * 359.97438 * 24 23 22 26 26 C 1.38125 * 120.06813 * 0.02562 * 25 24 23 27 27 N 1.30877 * 125.87510 * 304.97198 * 17 16 14 28 28 H 1.08002 * 119.99940 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99614 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00029 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47208 * 5.00436 * 3 2 1 32 32 H 1.09003 * 109.47253 * 244.99827 * 3 2 1 33 33 H 1.09002 * 109.46905 * 29.99871 * 5 4 3 34 34 H 1.08991 * 109.46908 * 150.00237 * 5 4 3 35 35 H 0.96993 * 120.00041 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.47163 * 60.00391 * 16 14 4 37 37 H 1.09001 * 109.47464 * 300.00109 * 16 14 4 38 38 H 1.07998 * 126.03490 * 0.02562 * 18 17 16 39 39 H 1.08001 * 126.14239 * 180.22059 * 19 18 17 40 40 H 1.08005 * 120.03710 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.97122 * 179.72294 * 23 22 21 42 42 H 1.07995 * 119.93558 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.96916 * 180.02562 * 25 24 23 44 44 H 1.07993 * 120.03299 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8441 3.3436 2.4804 7 1 3.3038 3.8370 1.6369 8 6 2.5192 4.0665 3.6087 9 7 1.9599 3.4657 4.6362 10 14 2.8735 5.8993 3.6779 11 1 3.5022 6.3303 2.4034 12 1 1.6034 6.6417 3.8797 13 1 3.7972 6.1827 4.8056 14 6 4.2496 0.8663 0.9824 15 8 5.0200 0.8888 1.9189 16 6 4.6969 0.3176 -0.3480 17 6 6.1312 -0.1341 -0.2485 18 6 6.6132 -1.4091 -0.5643 19 6 7.9491 -1.4148 -0.3482 20 7 8.2990 -0.1870 0.0975 21 6 9.5929 0.2279 0.4419 22 6 9.8131 1.5261 0.8820 23 6 11.0891 1.9318 1.2212 24 6 12.1466 1.0462 1.1233 25 6 11.9302 -0.2477 0.6863 26 6 10.6565 -0.6593 0.3457 27 7 7.1404 0.5989 0.1480 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4028 -0.9314 33 1 1.4887 1.6967 2.5459 34 1 3.0989 1.3603 3.2259 35 1 1.7310 3.9743 5.4297 36 1 4.6120 1.0941 -1.1083 37 1 4.0678 -0.5294 -0.6218 38 1 6.0239 -2.2405 -0.9218 39 1 8.6156 -2.2506 -0.5016 40 1 8.9875 2.2182 0.9591 41 1 11.2617 2.9429 1.5593 42 1 13.1435 1.3658 1.3887 43 1 12.7580 -0.9373 0.6113 44 1 10.4881 -1.6701 0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574346386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:17 Heat of formation + Delta-G solvation = 100.378386 kcal Electronic energy + Delta-G solvation = -26323.457055 eV Core-core repulsion = 22629.579636 eV Total energy + Delta-G solvation = -3693.877419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50953 -39.24061 -38.74479 -35.61221 -33.96712 -33.12681 -32.02780 -31.37485 -30.89564 -29.77958 -28.28480 -26.95653 -25.33276 -23.44732 -23.11602 -22.31169 -20.70990 -20.10262 -19.63029 -18.36333 -18.13735 -16.51558 -16.33885 -16.22396 -15.63298 -15.16508 -15.03122 -14.88324 -14.71260 -14.40138 -14.14364 -13.68987 -13.47323 -13.38475 -13.18758 -12.85040 -12.52438 -12.39146 -12.32113 -11.80967 -11.68099 -11.60491 -11.31264 -11.21595 -10.99128 -10.83192 -10.57145 -10.43861 -10.14311 -10.11070 -9.56614 -9.21011 -9.16262 -9.03322 -8.83020 -8.38786 -8.02129 -7.61845 -5.99393 -4.03469 0.76523 1.14434 2.20647 2.41271 2.47995 2.80327 3.32888 3.40234 3.43871 3.51487 3.64465 4.09688 4.36813 4.49183 4.59021 4.71387 4.75714 4.91650 5.11097 5.12758 5.18048 5.28166 5.34985 5.40037 5.43721 5.49068 5.55526 5.67711 5.71491 5.75039 5.80896 5.95804 6.04238 6.13663 6.22084 6.25404 6.30719 6.58108 6.68346 6.81690 6.94487 7.14474 7.19941 7.51159 7.61620 7.79399 7.97791 8.29426 8.46596 8.96722 9.16936 9.61417 11.08765 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.003463 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.123402 B = 8084.546570 C =10334.253964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.595 5.595 5 C 0.249 3.751 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.508 3.492 15 O -0.523 6.523 16 C -0.064 4.064 17 C 0.101 3.899 18 C -0.251 4.251 19 C 0.044 3.956 20 N -0.328 5.328 21 C 0.170 3.830 22 C -0.118 4.118 23 C -0.094 4.094 24 C -0.137 4.137 25 C -0.096 4.096 26 C -0.147 4.147 27 N -0.247 5.247 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -10.867 -14.022 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.130 3.870 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.293 3.707 15 O -0.398 6.398 16 C -0.106 4.106 17 C -0.068 4.068 18 C -0.279 4.279 19 C -0.098 4.098 20 N -0.104 5.104 21 C 0.077 3.923 22 C -0.138 4.138 23 C -0.113 4.113 24 C -0.155 4.155 25 C -0.114 4.114 26 C -0.168 4.168 27 N -0.066 5.066 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.171 0.829 39 H 0.191 0.809 40 H 0.159 0.841 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.242 -9.656 -12.878 20.843 hybrid contribution -0.252 0.055 -0.112 0.281 sum 12.990 -9.601 -12.990 20.728 Atomic orbital electron populations 1.23813 0.95879 1.01724 1.00686 1.23447 0.96408 0.99073 0.99807 1.20599 0.93201 0.95325 0.89781 1.48192 1.10339 1.60617 1.13586 1.19246 0.95273 0.93710 0.78780 1.21491 1.40111 0.93381 1.01216 0.92388 1.24932 0.95147 0.98693 0.95364 1.69945 1.42334 1.36003 1.05170 0.86466 0.77852 0.85116 0.78139 1.19779 1.21006 1.20942 1.20014 0.82445 0.79022 0.89230 1.90723 1.52148 1.55381 1.41590 1.20230 0.89190 1.02622 0.98579 1.21858 0.94800 0.92678 0.97474 1.21436 0.93835 0.98790 1.13848 1.22483 0.96920 0.89627 1.00735 1.45919 1.05502 1.09127 1.49803 1.17591 0.80682 0.94616 0.99371 1.21057 0.98518 0.94661 0.99577 1.21113 0.91764 1.00123 0.98264 1.21197 0.99298 0.93884 1.01157 1.20917 0.95823 0.96326 0.98374 1.20774 0.91897 0.99327 1.04825 1.77649 0.90097 1.17483 1.21361 0.88313 0.88835 0.87728 0.89445 0.90728 0.95009 0.94011 0.92860 0.87615 0.87490 0.82938 0.80863 0.84108 0.85087 0.85612 0.85244 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.31 9.74 -36.02 -0.35 -2.66 16 3 C 0.13 2.15 5.65 -5.19 -0.03 2.13 16 4 N -0.60 -12.70 2.44 -176.43 -0.43 -13.13 16 5 C 0.25 6.64 5.16 -5.19 -0.03 6.61 16 6 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 10 Si 0.90 22.36 29.54 -169.99 -5.02 17.33 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.51 10.86 7.66 -10.99 -0.08 10.78 16 15 O -0.52 -13.88 15.14 5.55 0.08 -13.79 16 16 C -0.06 -0.99 4.83 -29.03 -0.14 -1.13 16 17 C 0.10 1.69 6.02 -82.37 -0.50 1.19 16 18 C -0.25 -3.34 10.72 -39.99 -0.43 -3.76 16 19 C 0.04 0.55 10.80 -17.10 -0.18 0.37 16 20 N -0.33 -5.19 3.80 -10.70 -0.04 -5.23 16 21 C 0.17 2.40 6.69 -83.60 -0.56 1.84 16 22 C -0.12 -1.68 9.66 -39.40 -0.38 -2.06 16 23 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 24 C -0.14 -1.26 10.04 -39.55 -0.40 -1.66 16 25 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 26 C -0.15 -1.56 9.46 -39.40 -0.37 -1.93 16 27 N -0.25 -4.71 11.22 33.69 0.38 -4.33 16 28 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 29 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.10 1.32 7.83 -52.49 -0.41 0.91 16 31 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 32 H 0.07 0.96 6.44 -51.93 -0.33 0.63 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 36 H 0.11 1.43 7.40 -51.92 -0.38 1.04 16 37 H 0.11 1.26 7.75 -51.93 -0.40 0.86 16 38 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.17 1.41 7.04 -52.49 -0.37 1.05 16 40 H 0.14 2.28 7.70 -52.48 -0.40 1.88 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.03 6.74 -52.49 -0.35 0.67 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -37.36 380.79 -8.74 -46.10 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.94 Total: 2.39 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -4.25 Total: -8.68 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.64 Total: -49.09 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.36 -8.74 -46.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574346386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.477 kcal (2) G-P(sol) polarization free energy of solvation -37.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds