Wall clock time and date at job start Tue Mar 31 2020 14:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99592 * 2 1 4 4 N 1.46506 * 109.46597 * 125.00155 * 3 2 1 5 5 C 1.46500 * 120.00028 * 269.99601 * 4 3 2 6 6 C 1.50698 * 109.46961 * 270.00653 * 5 4 3 7 7 H 1.07995 * 120.00668 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99734 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00258 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00059 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46777 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47185 * 119.99664 * 10 8 6 13 13 H 1.48502 * 109.47002 * 240.00033 * 10 8 6 14 14 C 1.34770 * 119.99956 * 90.00236 * 4 3 2 15 15 O 1.21286 * 120.00357 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00182 * 359.97438 * 14 4 3 17 17 C 1.50705 * 109.47269 * 180.02562 * 16 14 4 18 18 C 1.39922 * 125.87883 * 124.97735 * 17 16 14 19 19 C 1.35319 * 107.92762 * 179.76950 * 18 17 16 20 20 N 1.35222 * 107.71676 * 0.36926 * 19 18 17 21 21 C 1.40180 * 126.05583 * 179.90121 * 20 19 18 22 22 C 1.38835 * 120.06644 * 179.70997 * 21 20 19 23 23 C 1.38125 * 119.93500 * 179.97438 * 22 21 20 24 24 C 1.38282 * 120.06295 * 359.97438 * 23 22 21 25 25 C 1.38280 * 120.13446 * 359.97438 * 24 23 22 26 26 C 1.38125 * 120.06813 * 0.02562 * 25 24 23 27 27 N 1.30877 * 125.87510 * 304.97198 * 17 16 14 28 28 H 1.08002 * 119.99940 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99614 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00029 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47208 * 5.00436 * 3 2 1 32 32 H 1.09003 * 109.47253 * 244.99827 * 3 2 1 33 33 H 1.09002 * 109.46905 * 29.99871 * 5 4 3 34 34 H 1.08991 * 109.46908 * 150.00237 * 5 4 3 35 35 H 0.96993 * 120.00041 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.47163 * 60.00391 * 16 14 4 37 37 H 1.09001 * 109.47464 * 300.00109 * 16 14 4 38 38 H 1.07998 * 126.03490 * 0.02562 * 18 17 16 39 39 H 1.08001 * 126.14239 * 180.22059 * 19 18 17 40 40 H 1.08005 * 120.03710 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.97122 * 179.72294 * 23 22 21 42 42 H 1.07995 * 119.93558 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.96916 * 180.02562 * 25 24 23 44 44 H 1.07993 * 120.03299 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8441 3.3436 2.4804 7 1 3.3038 3.8370 1.6369 8 6 2.5192 4.0665 3.6087 9 7 1.9599 3.4657 4.6362 10 14 2.8735 5.8993 3.6779 11 1 3.5022 6.3303 2.4034 12 1 1.6034 6.6417 3.8797 13 1 3.7972 6.1827 4.8056 14 6 4.2496 0.8663 0.9824 15 8 5.0200 0.8888 1.9189 16 6 4.6969 0.3176 -0.3480 17 6 6.1312 -0.1341 -0.2485 18 6 6.6132 -1.4091 -0.5643 19 6 7.9491 -1.4148 -0.3482 20 7 8.2990 -0.1870 0.0975 21 6 9.5929 0.2279 0.4419 22 6 9.8131 1.5261 0.8820 23 6 11.0891 1.9318 1.2212 24 6 12.1466 1.0462 1.1233 25 6 11.9302 -0.2477 0.6863 26 6 10.6565 -0.6593 0.3457 27 7 7.1404 0.5989 0.1480 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4028 -0.9314 33 1 1.4887 1.6967 2.5459 34 1 3.0989 1.3603 3.2259 35 1 1.7310 3.9743 5.4297 36 1 4.6120 1.0941 -1.1083 37 1 4.0678 -0.5294 -0.6218 38 1 6.0239 -2.2405 -0.9218 39 1 8.6156 -2.2506 -0.5016 40 1 8.9875 2.2182 0.9591 41 1 11.2617 2.9429 1.5593 42 1 13.1435 1.3658 1.3887 43 1 12.7580 -0.9373 0.6113 44 1 10.4881 -1.6701 0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574346386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:16 Heat of formation + Delta-G solvation = 77.161581 kcal Electronic energy + Delta-G solvation = -26324.463811 eV Core-core repulsion = 22629.579636 eV Total energy + Delta-G solvation = -3694.884175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56217 -40.66746 -39.84480 -37.19267 -35.26440 -34.86563 -33.63271 -32.26446 -32.04579 -30.87094 -29.78512 -28.46236 -26.83000 -25.04037 -24.17324 -23.52748 -21.69060 -21.35866 -20.76097 -19.67771 -19.24418 -18.65965 -17.84747 -17.30742 -17.10124 -16.42013 -16.33455 -16.10742 -15.89536 -15.73883 -15.40585 -14.77044 -14.55013 -14.47415 -14.36487 -14.27122 -14.08198 -13.74462 -13.63981 -13.25528 -13.06870 -12.95398 -12.80074 -12.61326 -12.58075 -12.26410 -12.17129 -12.12858 -11.66364 -11.53477 -11.15893 -10.67226 -10.57031 -10.26454 -10.08721 -10.04128 -9.44329 -8.99796 -8.24450 -6.38817 -0.13467 0.30737 1.22421 1.31760 1.34898 1.37759 1.45730 1.46914 1.71466 1.86455 2.34099 2.58543 2.78971 3.04739 3.36990 3.70314 3.77775 3.86508 3.98009 4.10417 4.15879 4.21012 4.30185 4.38046 4.40619 4.47715 4.51980 4.60190 4.74324 4.79395 4.89247 4.94951 4.99451 5.04643 5.11221 5.22208 5.30288 5.37037 5.47965 5.52560 5.63116 5.75905 5.78462 5.82651 6.00374 6.06130 6.27561 6.68564 6.71211 6.79377 7.27135 7.51279 8.82807 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.003463 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.123402 B = 8084.546570 C =10334.253964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C 0.130 3.870 4 N -0.599 5.599 5 C 0.268 3.732 6 C -0.541 4.541 7 H 0.050 0.950 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.966 3.034 11 H -0.269 1.269 12 H -0.264 1.264 13 H -0.283 1.283 14 C 0.499 3.501 15 O -0.587 6.587 16 C -0.048 4.048 17 C 0.077 3.923 18 C -0.256 4.256 19 C 0.048 3.952 20 N -0.337 5.337 21 C 0.134 3.866 22 C -0.155 4.155 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.087 4.087 26 C -0.142 4.142 27 N -0.315 5.315 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.023 0.977 34 H -0.009 1.009 35 H 0.267 0.733 36 H 0.126 0.874 37 H 0.151 0.849 38 H 0.190 0.810 39 H 0.222 0.778 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.172 0.828 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.059 -12.697 -16.196 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C 0.008 3.992 4 N -0.330 5.330 5 C 0.146 3.854 6 C -0.580 4.580 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.194 1.194 12 H -0.189 1.189 13 H -0.209 1.209 14 C 0.287 3.713 15 O -0.467 6.467 16 C -0.089 4.089 17 C -0.091 4.091 18 C -0.284 4.284 19 C -0.093 4.093 20 N -0.113 5.113 21 C 0.042 3.958 22 C -0.175 4.175 23 C -0.121 4.121 24 C -0.147 4.147 25 C -0.105 4.105 26 C -0.163 4.163 27 N -0.135 5.135 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.169 0.831 38 H 0.207 0.793 39 H 0.238 0.762 40 H 0.118 0.882 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.189 0.811 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.800 -11.490 -15.107 24.068 hybrid contribution -0.674 0.593 0.592 1.076 sum 14.126 -10.897 -14.515 22.999 Atomic orbital electron populations 1.24041 0.95661 1.02756 0.98585 1.23359 0.96736 0.98342 1.01598 1.20887 0.92710 0.96520 0.89046 1.48181 1.11618 1.60069 1.13128 1.18628 0.93720 0.92478 0.80562 1.21747 1.40263 0.94615 1.01336 0.93147 1.25849 0.94716 1.03726 0.94860 1.70058 1.42983 1.37984 1.05760 0.85399 0.78336 0.79222 0.78043 1.19353 1.18923 1.20901 1.21085 0.81470 0.77885 0.90859 1.90687 1.53815 1.57908 1.44333 1.20247 0.89532 1.04467 0.94690 1.22239 0.94736 0.94271 0.97857 1.21874 0.94444 0.98288 1.13798 1.23324 0.97683 0.89520 0.98733 1.46106 1.05325 1.09884 1.50010 1.18049 0.81176 0.95342 1.01184 1.20976 0.98838 0.95069 1.02612 1.21323 0.91196 1.01370 0.98229 1.21631 0.99936 0.93709 0.99473 1.21463 0.96207 0.96685 0.96126 1.21178 0.91337 0.99937 1.03806 1.77552 0.91960 1.20293 1.23708 0.88657 0.86468 0.86036 0.90718 0.87186 0.95922 0.99082 0.92429 0.85645 0.83100 0.79313 0.76188 0.88197 0.84050 0.82225 0.81089 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 14.32 67.78 0.97 -3.10 16 2 C -0.18 -4.70 9.74 25.65 0.25 -4.45 16 3 C 0.13 4.11 5.65 85.63 0.48 4.59 16 4 N -0.60 -26.53 2.44 -830.50 -2.03 -28.56 16 5 C 0.27 15.17 5.16 85.63 0.44 15.61 16 6 C -0.54 -32.80 9.39 25.60 0.24 -32.56 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.44 5.46 84.66 0.46 0.90 16 9 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 10 Si 0.97 47.07 29.54 68.60 2.03 49.10 16 11 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 14 C 0.50 22.27 7.66 87.66 0.67 22.94 16 15 O -0.59 -33.55 15.14 -3.05 -0.05 -33.60 16 16 C -0.05 -1.47 4.83 29.10 0.14 -1.33 16 17 C 0.08 2.60 6.02 43.11 0.26 2.86 16 18 C -0.26 -6.37 10.72 22.00 0.24 -6.14 16 19 C 0.05 1.14 10.80 83.50 0.90 2.05 16 20 N -0.34 -10.92 3.80 -187.77 -0.71 -11.64 16 21 C 0.13 3.88 6.69 38.09 0.25 4.13 16 22 C -0.15 -4.81 9.66 22.39 0.22 -4.60 16 23 C -0.10 -2.33 10.04 22.25 0.22 -2.11 16 24 C -0.13 -2.06 10.04 22.29 0.22 -1.84 16 25 C -0.09 -1.23 10.04 22.25 0.22 -1.00 16 26 C -0.14 -2.67 9.46 22.39 0.21 -2.46 16 27 N -0.32 -12.74 11.22 -47.33 -0.53 -13.27 16 28 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 29 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.12 2.75 7.83 -2.91 -0.02 2.73 16 31 H 0.07 2.53 7.72 -2.39 -0.02 2.51 16 32 H 0.11 2.65 6.44 -2.39 -0.02 2.63 16 33 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 34 H -0.01 -0.59 7.42 -2.39 -0.02 -0.61 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.13 3.26 7.40 -2.38 -0.02 3.24 16 37 H 0.15 3.14 7.75 -2.39 -0.02 3.13 16 38 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 39 H 0.22 2.70 7.04 -2.91 -0.02 2.68 16 40 H 0.10 3.80 7.70 -2.91 -0.02 3.78 16 41 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.16 1.88 6.74 -2.91 -0.02 1.86 16 Total: -1.00 -91.54 380.79 6.40 -85.14 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.00 Total: 17.30 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 6.41 Total: -6.50 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -2.99 Total: -111.43 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.05 Total: -33.60 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -91.54 6.40 -85.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574346386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.302 kcal (2) G-P(sol) polarization free energy of solvation -91.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds