Wall clock time and date at job start Tue Mar 31 2020 13:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46599 * 2 1 4 4 H 1.08998 * 109.47342 * 55.00244 * 3 2 1 5 5 N 1.46497 * 109.47673 * 294.99853 * 3 2 1 6 6 C 1.34769 * 120.00249 * 155.80394 * 5 3 2 7 7 O 1.21280 * 119.99984 * 0.02562 * 6 5 3 8 8 C 1.50697 * 119.99971 * 179.97438 * 6 5 3 9 9 C 1.53007 * 109.47167 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46776 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46405 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46467 * 180.02562 * 11 10 9 13 13 H 1.07991 * 120.00578 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99238 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00575 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99582 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47292 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47423 * 120.00156 * 16 14 12 19 19 H 1.48503 * 109.47228 * 240.00356 * 16 14 12 20 20 C 1.50705 * 109.46934 * 174.99848 * 3 2 1 21 21 C 1.38229 * 119.98503 * 92.09839 * 20 3 2 22 22 C 1.38189 * 120.04880 * 179.76853 * 21 20 3 23 23 C 1.38499 * 120.02712 * 0.51116 * 22 21 20 24 24 F 1.35095 * 120.01286 * 179.76898 * 23 22 21 25 25 C 1.38396 * 119.96931 * 359.74358 * 23 22 21 26 26 C 1.38442 * 119.95412 * 0.02562 * 25 23 22 27 27 F 1.35099 * 120.01238 * 180.02562 * 26 25 23 28 28 H 1.08999 * 109.47280 * 299.99240 * 1 2 3 29 29 H 1.09002 * 109.47275 * 60.00100 * 1 2 3 30 30 H 1.09006 * 109.46848 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47102 * 240.00042 * 2 1 3 32 32 H 1.09002 * 109.47275 * 119.99900 * 2 1 3 33 33 H 0.97003 * 119.99142 * 335.80997 * 5 3 2 34 34 H 1.08997 * 109.47952 * 300.00100 * 8 6 5 35 35 H 1.08999 * 109.47011 * 60.00394 * 8 6 5 36 36 H 1.09001 * 109.47116 * 300.00168 * 9 8 6 37 37 H 1.08999 * 109.46898 * 60.00246 * 9 8 6 38 38 H 1.08993 * 109.47486 * 299.99689 * 10 9 8 39 39 H 1.08995 * 109.46933 * 60.00420 * 10 9 8 40 40 H 1.09001 * 109.47311 * 299.99818 * 11 10 9 41 41 H 1.08999 * 109.47074 * 60.00122 * 11 10 9 42 42 H 0.97000 * 120.00218 * 180.02562 * 15 14 12 43 43 H 1.08000 * 119.97770 * 0.02562 * 21 20 3 44 44 H 1.08004 * 119.98871 * 180.25255 * 22 21 20 45 45 H 1.08006 * 120.02354 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 1.5412 3.4397 -1.3037 7 8 1.7625 4.1052 -0.3143 8 6 1.1432 4.1135 -2.5915 9 6 1.0917 5.6280 -2.3801 10 6 0.6869 6.3120 -3.6875 11 6 0.6349 7.8264 -3.4758 12 6 0.2355 8.5001 -4.7634 13 1 0.0390 7.9075 -5.6445 14 6 0.1211 9.8731 -4.8162 15 7 0.3609 10.5948 -3.7433 16 14 -0.3731 10.7083 -6.4124 17 1 -0.5845 9.6810 -7.4638 18 1 -1.6315 11.4688 -6.2041 19 1 0.7030 11.6388 -6.8381 20 6 3.5418 1.4444 0.1239 21 6 4.3287 1.4544 -1.0125 22 6 5.7060 1.4609 -0.9004 23 6 6.2996 1.4469 0.3508 24 9 7.6462 1.4486 0.4600 25 6 5.5127 1.4316 1.4892 26 6 4.1330 1.4299 1.3758 27 9 3.3637 1.4155 2.4862 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.4757 1.5652 -2.0431 34 1 1.8745 3.8797 -3.3652 35 1 0.1609 3.7558 -2.9002 36 1 0.3605 5.8622 -1.6063 37 1 2.0742 5.9853 -2.0717 38 1 1.4177 6.0779 -4.4615 39 1 -0.2957 5.9545 -3.9954 40 1 -0.0963 8.0602 -2.7019 41 1 1.6172 8.1841 -3.1675 42 1 0.2801 11.5608 -3.7805 43 1 3.8668 1.4612 -1.9887 44 1 6.3199 1.4728 -1.7890 45 1 5.9747 1.4211 2.4654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588158734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:03 Heat of formation + Delta-G solvation = -136.012232 kcal Electronic energy + Delta-G solvation = -26822.864367 eV Core-core repulsion = 22668.047095 eV Total energy + Delta-G solvation = -4154.817272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.33754 -49.31515 -40.38515 -38.93355 -36.41349 -34.85506 -32.81477 -32.41489 -31.35418 -30.96778 -29.63309 -26.65431 -25.36635 -23.62989 -22.85524 -22.55787 -21.10181 -20.37695 -19.97022 -18.60241 -17.66222 -16.94900 -16.74809 -16.30159 -16.19021 -16.10203 -15.77346 -15.60978 -15.45335 -14.78187 -14.48478 -14.45619 -14.33237 -13.85300 -13.78871 -13.52250 -13.05816 -12.77618 -12.61603 -12.38370 -12.18233 -11.88493 -11.76943 -11.69704 -11.58561 -11.50504 -11.36688 -10.99679 -10.54573 -10.48405 -10.41707 -9.86080 -9.62204 -9.48296 -9.35582 -9.22615 -8.98541 -8.93499 -8.30597 -5.95060 -3.97586 0.55299 0.63377 2.66158 2.88607 3.05295 3.33131 3.40361 3.44094 3.50544 4.03545 4.12218 4.21902 4.44689 4.49040 4.50257 4.63933 4.78382 4.81289 4.96311 5.23330 5.28281 5.32559 5.35076 5.40400 5.41252 5.42138 5.52060 5.57238 5.60783 5.66722 5.78506 5.85287 5.89429 6.13025 6.24908 6.30248 6.37432 6.54114 6.83599 7.01767 7.19840 7.35215 7.74688 7.90373 8.06423 8.21334 8.48109 9.10448 9.66142 11.16290 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.002282 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.292071 B =12267.070344 C =13295.708356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.187 3.813 4 H 0.102 0.898 5 N -0.732 5.732 6 C 0.512 3.488 7 O -0.527 6.527 8 C -0.138 4.138 9 C -0.104 4.104 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.135 4.135 21 C -0.049 4.049 22 C -0.161 4.161 23 C 0.127 3.873 24 F -0.132 7.132 25 C -0.191 4.191 26 C 0.140 3.860 27 F -0.127 7.127 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.401 0.599 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 -28.171 7.939 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.081 3.919 4 H 0.120 0.880 5 N -0.386 5.386 6 C 0.300 3.700 7 O -0.401 6.401 8 C -0.178 4.178 9 C -0.142 4.142 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.138 4.138 21 C -0.067 4.067 22 C -0.180 4.180 23 C 0.107 3.893 24 F -0.110 7.110 25 C -0.211 4.211 26 C 0.120 3.880 27 F -0.105 7.105 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.555 -27.483 8.775 29.823 hybrid contribution -0.079 0.358 -0.930 0.999 sum 7.476 -27.125 7.845 29.209 Atomic orbital electron populations 1.21775 0.94502 1.01997 1.02711 1.21795 0.97001 0.94046 1.03391 1.19716 0.88435 0.94339 0.89390 0.87965 1.46154 1.71995 1.07402 1.13042 1.21167 0.75993 0.81475 0.91357 1.90729 1.48310 1.63825 1.37239 1.21801 1.03079 0.98660 0.94255 1.21458 1.02655 0.90361 0.99697 1.21645 0.99474 0.99186 0.94432 1.19102 0.97244 0.88545 0.96880 1.21319 1.46030 0.91647 0.96797 0.92711 1.25046 0.95627 0.97683 0.96244 1.69982 1.49683 1.05703 1.28073 0.86564 0.78149 0.79536 0.83898 1.19782 1.21054 1.21051 1.20397 0.97656 1.03862 0.91849 1.20682 0.92022 0.95551 0.98480 1.21226 0.95780 1.04376 0.96607 1.17301 0.77099 1.01184 0.93694 1.91536 1.28925 1.93649 1.96940 1.21009 0.92372 1.07810 0.99881 1.17036 0.87796 1.00844 0.82286 1.91533 1.74811 1.93461 1.50728 0.92308 0.92151 0.92234 0.90951 0.90332 0.76431 0.89133 0.89055 0.91800 0.91831 0.93501 0.93483 0.96600 0.96613 0.93093 0.84059 0.83875 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.80 37.16 0.36 -0.54 16 2 C -0.12 -0.75 5.45 -26.73 -0.15 -0.89 16 3 C 0.19 1.65 1.97 -69.08 -0.14 1.51 16 4 H 0.10 1.18 7.17 -51.93 -0.37 0.80 16 5 N -0.73 -6.20 3.35 -54.94 -0.18 -6.39 16 6 C 0.51 6.53 7.78 -10.99 -0.09 6.45 16 7 O -0.53 -9.25 15.66 5.56 0.09 -9.16 16 8 C -0.14 -1.70 5.70 -27.88 -0.16 -1.85 16 9 C -0.10 -1.81 4.50 -26.72 -0.12 -1.93 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.36 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.14 -1.28 4.99 -104.54 -0.52 -1.80 16 21 C -0.05 -0.40 9.31 -39.60 -0.37 -0.77 16 22 C -0.16 -1.33 10.03 -39.50 -0.40 -1.72 16 23 C 0.13 1.19 7.30 -39.43 -0.29 0.90 16 24 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 25 C -0.19 -1.79 10.01 -39.45 -0.39 -2.19 16 26 C 0.14 1.43 7.24 -39.43 -0.29 1.15 16 27 F -0.13 -1.38 16.52 2.25 0.04 -1.34 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.36 7.75 -51.93 -0.40 -0.04 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.40 2.09 8.60 -40.82 -0.35 1.74 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.14 0.87 7.34 -52.49 -0.39 0.49 16 44 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -34.33 386.36 -8.67 -43.01 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.97 Total: -3.25 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -3.22 Total: -17.44 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.55 Total: -33.22 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.33 -8.67 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.003 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds