Wall clock time and date at job start Tue Mar 31 2020 13:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 6 6 C 1.34777 * 119.99525 * 274.99614 * 5 3 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 3 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 3 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 6 11 11 C 1.53010 * 109.46712 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46923 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00086 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46793 * 59.99999 * 16 14 12 18 18 H 1.48494 * 109.47228 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47108 * 300.00114 * 16 14 12 20 20 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 21 21 C 1.38225 * 119.98432 * 265.00148 * 20 3 2 22 22 C 1.38190 * 120.04784 * 179.97438 * 21 20 3 23 23 C 1.38494 * 120.02665 * 359.97433 * 22 21 20 24 24 F 1.35098 * 120.01145 * 179.97438 * 23 22 21 25 25 C 1.38395 * 119.97540 * 0.02562 * 23 22 21 26 26 C 1.38441 * 119.94720 * 359.76388 * 25 23 22 27 27 F 1.35104 * 120.01612 * 180.23200 * 26 25 23 28 28 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 29 29 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 30 30 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 32 32 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 33 33 H 0.97000 * 120.00580 * 95.00360 * 5 3 2 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 37 37 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 38 38 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 39 39 H 1.09001 * 109.47109 * 60.00906 * 10 9 8 40 40 H 1.08995 * 109.47108 * 300.00413 * 11 10 9 41 41 H 1.09000 * 109.46707 * 60.01096 * 11 10 9 42 42 H 0.96999 * 120.00235 * 180.02562 * 15 14 12 43 43 H 1.08001 * 119.97610 * 359.96897 * 21 20 3 44 44 H 1.08007 * 119.98845 * 179.97438 * 22 21 20 45 45 H 1.07993 * 120.02798 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6523 2.0975 1.2518 6 6 0.4350 2.6644 1.3668 7 8 -0.3397 2.6319 0.4343 8 6 0.0340 3.3328 2.6566 9 6 -1.3871 3.8842 2.5250 10 6 -1.7945 4.5621 3.8346 11 6 -3.2154 5.1141 3.7027 12 6 -3.6169 5.7814 4.9929 13 1 -2.9274 5.8093 5.8237 14 6 -4.8644 6.3561 5.1127 15 7 -5.7042 6.3215 4.1012 16 14 -5.3619 7.1838 6.7117 17 1 -4.4242 8.2973 7.0052 18 1 -6.7414 7.7183 6.5842 19 1 -5.3155 6.1934 7.8171 20 6 3.5419 1.4444 -0.1239 21 6 4.3285 1.5149 1.0105 22 6 5.7058 1.5162 0.8985 23 6 6.2996 1.4463 -0.3507 24 9 7.6461 1.4481 -0.4599 25 6 5.5130 1.3757 -1.4872 26 6 4.1333 1.3701 -1.3735 27 9 3.3641 1.2965 -2.4818 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.2718 2.1233 1.9978 34 1 0.0680 2.6060 3.4684 35 1 0.7223 4.1501 2.8717 36 1 -1.4211 4.6108 1.7132 37 1 -2.0755 3.0668 2.3099 38 1 -1.7606 3.8352 4.6460 39 1 -1.1062 5.3795 4.0500 40 1 -3.2489 5.8412 2.8914 41 1 -3.9040 4.2970 3.4872 42 1 -6.5817 6.7262 4.1853 43 1 3.8663 1.5691 1.9852 44 1 6.3195 1.5717 1.7855 45 1 5.9751 1.3208 -2.4617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588158735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:05 Heat of formation + Delta-G solvation = -129.672092 kcal Electronic energy + Delta-G solvation = -26617.734823 eV Core-core repulsion = 22463.192480 eV Total energy + Delta-G solvation = -4154.542343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.52007 -49.48342 -40.53325 -39.17985 -36.19673 -34.82215 -32.89015 -32.36525 -31.51404 -31.06210 -29.62662 -26.65315 -25.39844 -23.89457 -22.84918 -22.52534 -21.04041 -20.39935 -19.97534 -18.74042 -17.78549 -17.30173 -16.55300 -16.51102 -16.17601 -16.05488 -15.84484 -15.73323 -15.60944 -14.96521 -14.67167 -14.50211 -14.39636 -13.92598 -13.53881 -13.37263 -13.10959 -12.88882 -12.60310 -12.37445 -12.09730 -11.98194 -11.74625 -11.68578 -11.59414 -11.40234 -11.05838 -10.95297 -10.53463 -10.51961 -10.40892 -9.82784 -9.66871 -9.61201 -9.37732 -9.21741 -9.06048 -8.98447 -8.29796 -5.94589 -3.97234 0.33451 0.40707 2.67007 2.73572 2.96910 3.29488 3.35471 3.39963 3.42046 3.81638 3.93636 3.98048 4.27678 4.49082 4.54326 4.72880 4.76321 4.89824 5.07905 5.18545 5.23035 5.29887 5.32664 5.35343 5.37482 5.40653 5.45479 5.57617 5.65458 5.82938 5.84320 5.97556 6.13334 6.15662 6.25061 6.29839 6.35877 6.54500 6.83899 7.01839 7.19877 7.33720 7.74276 7.90588 8.06662 8.21392 8.48319 9.10267 9.66291 11.16633 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.001955 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.633142 B =14321.082322 C =15057.563614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.187 3.813 4 H 0.104 0.896 5 N -0.735 5.735 6 C 0.514 3.486 7 O -0.524 6.524 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.132 4.132 21 C -0.059 4.059 22 C -0.156 4.156 23 C 0.128 3.872 24 F -0.131 7.131 25 C -0.187 4.187 26 C 0.141 3.859 27 F -0.124 7.124 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.725 -14.422 -9.224 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.082 3.918 4 H 0.122 0.878 5 N -0.390 5.390 6 C 0.302 3.698 7 O -0.399 6.399 8 C -0.179 4.179 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.133 4.133 21 C -0.077 4.077 22 C -0.175 4.175 23 C 0.108 3.892 24 F -0.109 7.109 25 C -0.207 4.207 26 C 0.121 3.879 27 F -0.102 7.102 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 25.970 -14.381 -10.011 31.329 hybrid contribution 0.244 0.469 0.954 1.091 sum 26.214 -13.912 -9.057 31.029 Atomic orbital electron populations 1.21814 0.93894 1.00966 1.03662 1.21932 0.97706 0.94474 1.02348 1.19723 0.87944 0.94782 0.89351 0.87845 1.46248 1.17692 1.59275 1.15793 1.21069 0.80631 0.77441 0.90706 1.90731 1.50695 1.57672 1.40756 1.21812 1.00919 1.00906 0.94260 1.21449 0.92288 1.00551 0.99788 1.21650 1.00315 0.98451 0.94382 1.19091 0.89814 0.95915 0.96883 1.21241 0.99561 1.35904 0.99209 0.92829 1.25044 0.96728 0.96407 0.96415 1.69962 1.07599 1.45232 1.30646 0.86670 0.77531 0.79813 0.84034 1.20293 1.21332 1.20299 1.20120 0.96814 1.04244 0.92165 1.20645 0.92264 0.96565 0.98236 1.21216 0.95593 1.03948 0.96755 1.17307 0.77184 1.01003 0.93671 1.91549 1.28827 1.93605 1.96912 1.21048 0.92262 1.07314 1.00077 1.17015 0.87827 1.00752 0.82294 1.91567 1.74743 1.93172 1.50720 0.91958 0.91881 0.93278 0.91210 0.91565 0.76657 0.89130 0.89141 0.91773 0.91770 0.93499 0.93511 0.96606 0.96601 0.92988 0.83899 0.83608 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.51 37.16 0.32 -1.31 16 2 C -0.13 -1.11 5.59 -26.73 -0.15 -1.26 16 3 C 0.19 1.70 2.24 -69.08 -0.15 1.54 16 4 H 0.10 1.19 7.23 -51.93 -0.38 0.82 16 5 N -0.73 -6.49 4.95 -54.93 -0.27 -6.76 16 6 C 0.51 6.45 6.40 -10.98 -0.07 6.38 16 7 O -0.52 -8.61 13.12 5.55 0.07 -8.54 16 8 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 9 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.13 -0.98 5.06 -104.54 -0.53 -1.51 16 21 C -0.06 -0.32 9.23 -39.60 -0.37 -0.68 16 22 C -0.16 -0.83 10.02 -39.50 -0.40 -1.23 16 23 C 0.13 0.86 7.30 -39.43 -0.29 0.57 16 24 F -0.13 -0.98 17.27 2.25 0.04 -0.94 16 25 C -0.19 -1.29 10.01 -39.45 -0.39 -1.68 16 26 C 0.14 1.13 7.24 -39.43 -0.29 0.84 16 27 F -0.12 -1.15 16.57 2.25 0.04 -1.11 16 28 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.06 0.79 7.85 -51.93 -0.41 0.39 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.40 2.28 6.20 -40.82 -0.25 2.03 16 34 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.14 0.44 6.07 -52.49 -0.32 0.12 16 44 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 45 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -33.31 377.20 -8.69 -42.00 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.68 Total: -2.60 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.28 Total: -17.82 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.46 Total: -33.50 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.08 Total: -2.05 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.31 -8.69 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.672 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds