Wall clock time and date at job start Tue Mar 31 2020 13:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 6 6 C 1.34777 * 119.99525 * 274.99614 * 5 3 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 3 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 3 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 6 11 11 C 1.53010 * 109.46712 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46923 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00086 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46793 * 59.99999 * 16 14 12 18 18 H 1.48494 * 109.47228 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47108 * 300.00114 * 16 14 12 20 20 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 21 21 C 1.38225 * 119.98432 * 265.00148 * 20 3 2 22 22 C 1.38190 * 120.04784 * 179.97438 * 21 20 3 23 23 C 1.38494 * 120.02665 * 359.97433 * 22 21 20 24 24 F 1.35098 * 120.01145 * 179.97438 * 23 22 21 25 25 C 1.38395 * 119.97540 * 0.02562 * 23 22 21 26 26 C 1.38441 * 119.94720 * 359.76388 * 25 23 22 27 27 F 1.35104 * 120.01612 * 180.23200 * 26 25 23 28 28 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 29 29 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 30 30 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 32 32 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 33 33 H 0.97000 * 120.00580 * 95.00360 * 5 3 2 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 37 37 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 38 38 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 39 39 H 1.09001 * 109.47109 * 60.00906 * 10 9 8 40 40 H 1.08995 * 109.47108 * 300.00413 * 11 10 9 41 41 H 1.09000 * 109.46707 * 60.01096 * 11 10 9 42 42 H 0.96999 * 120.00235 * 180.02562 * 15 14 12 43 43 H 1.08001 * 119.97610 * 359.96897 * 21 20 3 44 44 H 1.08007 * 119.98845 * 179.97438 * 22 21 20 45 45 H 1.07993 * 120.02798 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6523 2.0975 1.2518 6 6 0.4350 2.6644 1.3668 7 8 -0.3397 2.6319 0.4343 8 6 0.0340 3.3328 2.6566 9 6 -1.3871 3.8842 2.5250 10 6 -1.7945 4.5621 3.8346 11 6 -3.2154 5.1141 3.7027 12 6 -3.6169 5.7814 4.9929 13 1 -2.9274 5.8093 5.8237 14 6 -4.8644 6.3561 5.1127 15 7 -5.7042 6.3215 4.1012 16 14 -5.3619 7.1838 6.7117 17 1 -4.4242 8.2973 7.0052 18 1 -6.7414 7.7183 6.5842 19 1 -5.3155 6.1934 7.8171 20 6 3.5419 1.4444 -0.1239 21 6 4.3285 1.5149 1.0105 22 6 5.7058 1.5162 0.8985 23 6 6.2996 1.4463 -0.3507 24 9 7.6461 1.4481 -0.4599 25 6 5.5130 1.3757 -1.4872 26 6 4.1333 1.3701 -1.3735 27 9 3.3641 1.2965 -2.4818 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.2718 2.1233 1.9978 34 1 0.0680 2.6060 3.4684 35 1 0.7223 4.1501 2.8717 36 1 -1.4211 4.6108 1.7132 37 1 -2.0755 3.0668 2.3099 38 1 -1.7606 3.8352 4.6460 39 1 -1.1062 5.3795 4.0500 40 1 -3.2489 5.8412 2.8914 41 1 -3.9040 4.2970 3.4872 42 1 -6.5817 6.7262 4.1853 43 1 3.8663 1.5691 1.9852 44 1 6.3195 1.5717 1.7855 45 1 5.9751 1.3208 -2.4617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588158735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:04 Heat of formation + Delta-G solvation = -148.521458 kcal Electronic energy + Delta-G solvation = -26618.552193 eV Core-core repulsion = 22463.192480 eV Total energy + Delta-G solvation = -4155.359713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.12225 -50.04160 -41.34964 -39.88494 -37.11917 -36.40575 -34.60336 -33.51745 -32.09524 -31.65242 -31.22362 -27.83371 -26.75994 -24.60390 -23.99879 -23.46977 -22.04702 -21.58043 -21.27328 -19.31451 -18.45116 -18.36497 -18.08617 -17.27822 -17.12136 -16.93113 -16.58872 -16.49627 -16.38112 -16.25087 -15.90115 -15.55179 -15.10262 -14.88240 -14.53531 -14.49470 -14.15973 -13.86035 -13.61567 -13.55888 -13.46735 -13.23282 -12.91812 -12.75977 -12.51912 -12.47453 -12.35964 -12.17717 -12.11613 -12.06405 -11.85222 -11.33828 -11.32169 -11.13081 -10.71019 -10.53029 -10.19712 -10.12522 -9.66988 -8.17175 -6.29376 -0.18829 -0.06442 1.41192 1.45221 1.53012 1.71172 2.09277 2.28600 2.43147 2.78476 3.15332 3.23551 3.39194 3.52622 3.84410 3.85685 4.00831 4.02740 4.09519 4.16835 4.20280 4.36630 4.58093 4.68453 4.72225 4.73031 4.75357 4.83012 4.86000 4.89449 4.91156 4.97877 5.00704 5.05811 5.13749 5.23399 5.36268 5.38650 5.43778 5.51420 5.60146 5.66983 5.80833 5.90190 6.26899 6.56416 6.89254 7.32448 7.40158 8.94730 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.001955 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.633142 B =14321.082322 C =15057.563614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.191 3.809 4 H 0.072 0.928 5 N -0.713 5.713 6 C 0.513 3.487 7 O -0.572 6.572 8 C -0.128 4.128 9 C -0.095 4.095 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.137 4.137 21 C -0.051 4.051 22 C -0.145 4.145 23 C 0.119 3.881 24 F -0.136 7.136 25 C -0.190 4.190 26 C 0.122 3.878 27 F -0.139 7.139 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.416 0.584 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.060 0.940 40 H -0.017 1.017 41 H -0.016 1.016 42 H 0.262 0.738 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.446 -14.811 -6.312 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.086 3.914 4 H 0.090 0.910 5 N -0.369 5.369 6 C 0.302 3.698 7 O -0.451 6.451 8 C -0.168 4.168 9 C -0.134 4.134 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.138 4.138 21 C -0.069 4.069 22 C -0.163 4.163 23 C 0.099 3.901 24 F -0.115 7.115 25 C -0.210 4.210 26 C 0.102 3.898 27 F -0.117 7.117 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.257 0.743 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.190 0.810 44 H 0.191 0.809 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 28.756 -14.787 -7.075 33.100 hybrid contribution -0.582 0.574 -0.010 0.817 sum 28.174 -14.213 -7.085 32.342 Atomic orbital electron populations 1.21753 0.95837 1.00889 1.01575 1.21890 0.95761 0.94536 1.03639 1.19558 0.89159 0.94474 0.88247 0.90982 1.45979 1.16732 1.57811 1.16369 1.21120 0.81201 0.77321 0.90181 1.90734 1.52384 1.59654 1.42304 1.21684 0.97680 1.02449 0.94973 1.21233 0.95574 0.99190 0.97366 1.21446 0.96342 0.99194 0.96319 1.19062 0.93378 0.94176 0.95286 1.21733 1.00118 1.35906 1.00144 0.91506 1.26107 0.96799 0.97141 1.00502 1.70128 1.08091 1.46345 1.33283 0.85437 0.77149 0.78982 0.79092 1.18897 1.21209 1.18857 1.20013 0.95662 1.05356 0.92786 1.20930 0.92189 0.95227 0.98557 1.21515 0.95734 1.02063 0.97007 1.17497 0.76947 1.01359 0.94257 1.91539 1.29246 1.93698 1.96982 1.21136 0.91874 1.07078 1.00873 1.17220 0.88234 1.02156 0.82200 1.91529 1.75179 1.93486 1.51552 0.93626 0.94424 0.92254 0.90703 0.89375 0.74341 0.86094 0.86322 0.94052 0.93862 0.91978 0.92106 0.99862 0.99777 0.92906 0.80982 0.80944 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.51 71.98 0.61 -2.63 16 2 C -0.12 -1.98 5.59 30.59 0.17 -1.81 16 3 C 0.19 3.30 2.24 44.25 0.10 3.40 16 4 H 0.07 1.75 7.23 -2.38 -0.02 1.73 16 5 N -0.71 -11.03 4.95 -446.08 -2.21 -13.24 16 6 C 0.51 12.38 6.40 87.66 0.56 12.94 16 7 O -0.57 -19.54 13.12 -3.04 -0.04 -19.58 16 8 C -0.13 -2.84 5.70 29.85 0.17 -2.67 16 9 C -0.10 -3.31 4.50 30.59 0.14 -3.17 16 10 C -0.10 -3.80 5.15 30.60 0.16 -3.64 16 11 C 0.02 0.99 4.97 29.85 0.15 1.14 16 12 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 14 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 15 N -0.94 -59.09 13.29 21.45 0.28 -58.81 16 16 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 20 C -0.14 -1.79 5.06 -19.81 -0.10 -1.89 16 21 C -0.05 -0.36 9.23 22.26 0.21 -0.16 16 22 C -0.14 -1.02 10.02 22.32 0.22 -0.80 16 23 C 0.12 1.34 7.30 22.37 0.16 1.50 16 24 F -0.14 -1.79 17.27 44.97 0.78 -1.01 16 25 C -0.19 -2.42 10.01 22.36 0.22 -2.20 16 26 C 0.12 1.88 7.24 22.37 0.16 2.04 16 27 F -0.14 -2.70 16.57 44.97 0.75 -1.95 16 28 H 0.04 1.18 5.64 -2.39 -0.01 1.17 16 29 H 0.04 1.02 7.85 -2.39 -0.02 1.00 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.42 3.05 6.20 -92.71 -0.58 2.48 16 34 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.17 0.15 6.07 -2.91 -0.02 0.13 16 44 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 45 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -76.68 377.20 5.64 -71.04 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.42 Total: 5.83 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.63 Total: -28.93 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -1.92 Total: -72.05 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.04 Total: -19.58 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 1.52 Total: -2.97 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -76.68 5.64 -71.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.479 kcal (2) G-P(sol) polarization free energy of solvation -76.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds