Wall clock time and date at job start Tue Mar 31 2020 14:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46981 * 2 1 4 4 O 1.42900 * 109.47216 * 120.00348 * 2 1 3 5 5 C 1.36032 * 116.99692 * 154.99802 * 4 2 1 6 6 C 1.38492 * 120.07138 * 5.48650 * 5 4 2 7 7 C 1.38278 * 120.03211 * 179.97438 * 6 5 4 8 8 C 1.38358 * 120.16692 * 359.97395 * 7 6 5 9 9 Cl 1.73603 * 119.93417 * 180.02562 * 8 7 6 10 10 C 1.38326 * 120.13642 * 359.79104 * 8 7 6 11 11 C 1.38724 * 119.96116 * 0.46625 * 10 8 7 12 12 N 1.39963 * 120.07828 * 179.78966 * 11 10 8 13 13 C 1.46501 * 120.00120 * 359.72521 * 12 11 10 14 14 C 1.53001 * 109.46960 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47249 * 300.00042 * 14 13 12 16 16 C 1.53004 * 109.47073 * 59.99974 * 14 13 12 17 17 C 1.52998 * 109.46865 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47019 * 179.97438 * 17 14 13 19 19 H 1.08001 * 120.00036 * 0.02562 * 18 17 14 20 20 C 1.37876 * 119.99964 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99989 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47006 * 90.00170 * 22 20 18 24 24 H 1.48494 * 109.47102 * 210.00240 * 22 20 18 25 25 H 1.48499 * 109.47080 * 330.00557 * 22 20 18 26 26 H 1.09000 * 109.47163 * 299.99436 * 1 2 3 27 27 H 1.08993 * 109.47382 * 59.99790 * 1 2 3 28 28 H 1.09008 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46707 * 240.00448 * 2 1 3 30 30 H 1.09005 * 109.47058 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47450 * 300.00494 * 3 2 1 32 32 H 1.09000 * 109.46712 * 60.00288 * 3 2 1 33 33 H 1.08002 * 119.98248 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.91820 * 180.02562 * 7 6 5 35 35 H 1.07989 * 120.01834 * 180.22983 * 10 8 7 36 36 H 0.97000 * 119.99947 * 179.72270 * 12 11 10 37 37 H 1.08999 * 109.47110 * 60.00012 * 13 12 11 38 38 H 1.08998 * 109.46587 * 299.99777 * 13 12 11 39 39 H 1.08997 * 109.47320 * 59.99966 * 15 14 13 40 40 H 1.08999 * 109.47245 * 180.02562 * 15 14 13 41 41 H 1.09008 * 109.47296 * 299.99962 * 15 14 13 42 42 H 1.09005 * 109.47242 * 59.99789 * 16 14 13 43 43 H 1.08999 * 109.46937 * 179.97438 * 16 14 13 44 44 H 1.08997 * 109.47076 * 299.99777 * 16 14 13 45 45 H 1.09000 * 109.47647 * 300.00529 * 17 14 13 46 46 H 1.08999 * 109.46787 * 60.00441 * 17 14 13 47 47 H 0.96996 * 120.00267 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2479 -1.2254 1.0976 6 6 4.0353 -1.0240 -0.0238 7 6 5.2974 -1.5847 -0.0929 8 6 5.7778 -2.3475 0.9567 9 17 7.3635 -3.0480 0.8637 10 6 4.9991 -2.5490 2.0821 11 6 3.7301 -1.9935 2.1550 12 7 2.9384 -2.1996 3.2907 13 6 3.4474 -3.0077 4.4017 14 6 2.3933 -3.0742 5.5086 15 6 2.0855 -1.6603 6.0055 16 6 1.1154 -3.7108 4.9584 17 6 2.9245 -3.9187 6.6686 18 6 1.8866 -3.9837 7.7592 19 1 0.9422 -3.4741 7.6370 20 6 2.1425 -4.6938 8.9130 21 7 3.2926 -5.3140 9.0621 22 14 0.8556 -4.7751 10.2646 23 1 -0.0290 -5.9458 10.0361 24 1 1.5285 -4.9126 11.5812 25 1 0.0441 -3.5315 10.2509 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 3.6634 -0.4288 -0.8446 34 1 5.9100 -1.4262 -0.9681 35 1 5.3775 -3.1416 2.9017 36 1 2.0528 -1.8073 3.3422 37 1 4.3575 -2.5539 4.7939 38 1 3.6669 -4.0148 4.0475 39 1 1.7069 -1.0591 5.1790 40 1 1.3349 -1.7078 6.7945 41 1 2.9959 -1.2067 6.3975 42 1 1.3346 -4.7182 4.6044 43 1 0.3646 -3.7586 5.7472 44 1 0.7367 -3.1096 4.1319 45 1 3.1436 -4.9260 6.3143 46 1 3.8350 -3.4655 7.0607 47 1 3.4725 -5.8139 9.8736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589518787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:28 Heat of formation + Delta-G solvation = -43.048008 kcal Electronic energy + Delta-G solvation = -25696.751476 eV Core-core repulsion = 22097.762116 eV Total energy + Delta-G solvation = -3598.989360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47912 -38.30666 -37.42157 -36.22898 -34.26347 -33.24604 -32.23805 -29.99786 -28.85070 -27.54454 -26.95250 -26.47214 -25.84711 -23.57240 -22.71189 -21.75804 -20.77982 -18.70301 -17.96279 -17.01445 -16.41202 -16.05976 -15.63977 -15.17731 -14.74784 -14.66962 -14.35234 -14.28668 -13.77428 -13.61570 -13.22075 -13.02850 -12.83528 -12.71970 -12.56556 -12.49520 -12.33172 -12.14261 -12.05892 -11.57616 -11.46782 -11.21097 -11.04745 -11.00928 -10.85209 -10.75585 -10.65351 -10.58286 -10.37118 -10.23781 -10.02387 -9.69325 -9.19644 -8.93114 -8.45205 -8.36386 -7.05898 -6.00724 -4.01640 1.24387 1.48116 2.21009 3.04720 3.30718 3.37742 3.39768 3.71102 3.71429 4.45173 4.50370 4.62526 4.71058 4.84030 4.98392 5.20560 5.24548 5.33689 5.35066 5.43521 5.47783 5.50753 5.55662 5.60797 5.64750 5.79669 5.81421 5.88303 5.91434 6.14988 6.20044 6.20585 6.28389 6.32828 6.41037 6.57282 6.65975 6.66580 7.04609 7.08836 7.09983 7.20567 7.58955 7.62325 7.75183 7.98090 7.99914 8.40774 9.03011 9.61589 11.10789 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.003218 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.625388 B = 8698.057855 C =10743.579419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.180 4.180 4 O -0.311 6.311 5 C 0.055 3.945 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.014 4.014 9 Cl -0.079 7.079 10 C -0.168 4.168 11 C 0.219 3.781 12 N -0.727 5.727 13 C 0.130 3.870 14 C -0.070 4.070 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.037 3.963 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.406 0.594 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 10.818 -21.274 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.238 4.238 4 O -0.225 6.225 5 C 0.006 3.994 6 C -0.174 4.174 7 C -0.166 4.166 8 C -0.041 4.041 9 Cl -0.050 7.050 10 C -0.192 4.192 11 C 0.112 3.888 12 N -0.356 5.356 13 C 0.006 3.994 14 C -0.070 4.070 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.028 10.532 -20.810 23.323 hybrid contribution -0.648 -0.002 0.634 0.907 sum -0.676 10.530 -20.176 22.768 Atomic orbital electron populations 1.21855 0.92614 1.03233 1.02954 1.22354 0.95246 0.92449 0.87494 1.22389 1.02239 0.96155 1.03000 1.86065 1.29152 1.68825 1.38490 1.18437 0.86487 0.99331 0.95121 1.20868 0.94860 1.03842 0.97821 1.20445 0.96320 1.01106 0.98726 1.20446 0.87221 1.00147 0.96305 1.98351 1.24963 1.83378 1.98356 1.20344 0.93014 1.06468 0.99405 1.17091 0.90825 0.93990 0.86875 1.44954 1.18689 1.56540 1.15403 1.21658 0.97662 0.93919 0.86154 1.20849 0.94125 0.96902 0.95127 1.21740 1.01682 0.95123 0.99793 1.21743 0.97950 0.99256 0.99388 1.19090 0.96332 0.94003 0.90661 1.21187 1.01536 1.31164 1.00993 0.92282 1.25004 0.95313 0.95729 0.98408 1.69957 1.22636 1.33527 1.27348 0.86656 0.81732 0.78365 0.81620 1.20767 1.21328 1.19938 0.91404 0.90710 0.91602 0.91101 0.91769 0.91256 0.91401 0.84943 0.85539 0.84230 0.75652 0.92471 0.92469 0.95072 0.91582 0.93484 0.93484 0.91588 0.95077 0.96418 0.96410 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.56 37.16 0.36 -0.74 16 2 C 0.08 0.70 2.84 -26.73 -0.08 0.62 16 3 C -0.18 -1.36 9.17 37.16 0.34 -1.02 16 4 O -0.31 -3.76 9.05 -19.84 -0.18 -3.94 16 5 C 0.05 0.70 6.62 -39.09 -0.26 0.45 16 6 C -0.15 -1.69 8.25 -39.47 -0.33 -2.02 16 7 C -0.14 -1.64 9.82 -39.52 -0.39 -2.03 16 8 C -0.01 -0.18 6.32 -39.50 -0.25 -0.43 16 9 Cl -0.08 -0.96 28.95 -51.86 -1.50 -2.47 16 10 C -0.17 -2.37 9.09 -39.37 -0.36 -2.73 16 11 C 0.22 3.15 6.67 -83.57 -0.56 2.59 16 12 N -0.73 -10.92 5.13 -58.50 -0.30 -11.22 16 13 C 0.13 2.17 3.81 -4.04 -0.02 2.16 16 14 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 15 C -0.13 -2.29 8.05 37.15 0.30 -1.99 16 16 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 18 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.55 6.31 -51.93 -0.33 0.22 16 30 H 0.06 0.52 6.92 -51.93 -0.36 0.16 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.13 1.13 5.42 -52.49 -0.28 0.84 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.14 2.00 6.74 -52.49 -0.35 1.65 16 36 H 0.41 6.05 5.53 -40.82 -0.23 5.83 16 37 H 0.06 0.98 7.94 -51.93 -0.41 0.56 16 38 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 39 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 40 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 41 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 44 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -28.53 382.31 -9.43 -37.97 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.44 Total: 3.33 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.49 Total: -20.09 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.44 Total: -36.77 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.18 Total: -3.94 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.53 -9.43 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589518787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.082 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds