Wall clock time and date at job start Tue Mar 31 2020 14:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46981 * 2 1 4 4 O 1.42900 * 109.47216 * 120.00348 * 2 1 3 5 5 C 1.36032 * 116.99692 * 154.99802 * 4 2 1 6 6 C 1.38492 * 120.07138 * 5.48650 * 5 4 2 7 7 C 1.38278 * 120.03211 * 179.97438 * 6 5 4 8 8 C 1.38358 * 120.16692 * 359.97395 * 7 6 5 9 9 Cl 1.73603 * 119.93417 * 180.02562 * 8 7 6 10 10 C 1.38326 * 120.13642 * 359.79104 * 8 7 6 11 11 C 1.38724 * 119.96116 * 0.46625 * 10 8 7 12 12 N 1.39963 * 120.07828 * 179.78966 * 11 10 8 13 13 C 1.46501 * 120.00120 * 359.72521 * 12 11 10 14 14 C 1.53001 * 109.46960 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47249 * 300.00042 * 14 13 12 16 16 C 1.53004 * 109.47073 * 59.99974 * 14 13 12 17 17 C 1.52998 * 109.46865 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47019 * 179.97438 * 17 14 13 19 19 H 1.08001 * 120.00036 * 0.02562 * 18 17 14 20 20 C 1.37876 * 119.99964 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99989 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47006 * 90.00170 * 22 20 18 24 24 H 1.48494 * 109.47102 * 210.00240 * 22 20 18 25 25 H 1.48499 * 109.47080 * 330.00557 * 22 20 18 26 26 H 1.09000 * 109.47163 * 299.99436 * 1 2 3 27 27 H 1.08993 * 109.47382 * 59.99790 * 1 2 3 28 28 H 1.09008 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46707 * 240.00448 * 2 1 3 30 30 H 1.09005 * 109.47058 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47450 * 300.00494 * 3 2 1 32 32 H 1.09000 * 109.46712 * 60.00288 * 3 2 1 33 33 H 1.08002 * 119.98248 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.91820 * 180.02562 * 7 6 5 35 35 H 1.07989 * 120.01834 * 180.22983 * 10 8 7 36 36 H 0.97000 * 119.99947 * 179.72270 * 12 11 10 37 37 H 1.08999 * 109.47110 * 60.00012 * 13 12 11 38 38 H 1.08998 * 109.46587 * 299.99777 * 13 12 11 39 39 H 1.08997 * 109.47320 * 59.99966 * 15 14 13 40 40 H 1.08999 * 109.47245 * 180.02562 * 15 14 13 41 41 H 1.09008 * 109.47296 * 299.99962 * 15 14 13 42 42 H 1.09005 * 109.47242 * 59.99789 * 16 14 13 43 43 H 1.08999 * 109.46937 * 179.97438 * 16 14 13 44 44 H 1.08997 * 109.47076 * 299.99777 * 16 14 13 45 45 H 1.09000 * 109.47647 * 300.00529 * 17 14 13 46 46 H 1.08999 * 109.46787 * 60.00441 * 17 14 13 47 47 H 0.96996 * 120.00267 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2479 -1.2254 1.0976 6 6 4.0353 -1.0240 -0.0238 7 6 5.2974 -1.5847 -0.0929 8 6 5.7778 -2.3475 0.9567 9 17 7.3635 -3.0480 0.8637 10 6 4.9991 -2.5490 2.0821 11 6 3.7301 -1.9935 2.1550 12 7 2.9384 -2.1996 3.2907 13 6 3.4474 -3.0077 4.4017 14 6 2.3933 -3.0742 5.5086 15 6 2.0855 -1.6603 6.0055 16 6 1.1154 -3.7108 4.9584 17 6 2.9245 -3.9187 6.6686 18 6 1.8866 -3.9837 7.7592 19 1 0.9422 -3.4741 7.6370 20 6 2.1425 -4.6938 8.9130 21 7 3.2926 -5.3140 9.0621 22 14 0.8556 -4.7751 10.2646 23 1 -0.0290 -5.9458 10.0361 24 1 1.5285 -4.9126 11.5812 25 1 0.0441 -3.5315 10.2509 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 3.6634 -0.4288 -0.8446 34 1 5.9100 -1.4262 -0.9681 35 1 5.3775 -3.1416 2.9017 36 1 2.0528 -1.8073 3.3422 37 1 4.3575 -2.5539 4.7939 38 1 3.6669 -4.0148 4.0475 39 1 1.7069 -1.0591 5.1790 40 1 1.3349 -1.7078 6.7945 41 1 2.9959 -1.2067 6.3975 42 1 1.3346 -4.7182 4.6044 43 1 0.3646 -3.7586 5.7472 44 1 0.7367 -3.1096 4.1319 45 1 3.1436 -4.9260 6.3143 46 1 3.8350 -3.4655 7.0607 47 1 3.4725 -5.8139 9.8736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589518787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:27 Heat of formation + Delta-G solvation = -56.590661 kcal Electronic energy + Delta-G solvation = -25697.338730 eV Core-core repulsion = 22097.762116 eV Total energy + Delta-G solvation = -3599.576614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41009 -39.46728 -38.61671 -37.24931 -35.60505 -34.29184 -33.82890 -30.99561 -30.06094 -28.78313 -28.11919 -27.98553 -27.19490 -25.01246 -23.98053 -22.81628 -21.63942 -19.91813 -19.18727 -18.36940 -18.04079 -17.20613 -16.54223 -16.44744 -16.11580 -15.78568 -15.58457 -15.52101 -14.86397 -14.67090 -14.51090 -14.35599 -14.08141 -13.94370 -13.88302 -13.43597 -13.24036 -13.11393 -12.98503 -12.90024 -12.73282 -12.69683 -12.35494 -12.32514 -12.29838 -12.18449 -11.96381 -11.88947 -11.65356 -11.54442 -11.38648 -10.98356 -10.90660 -10.84863 -10.50956 -9.42849 -8.14324 -8.13499 -6.21466 0.26730 0.50235 1.23790 1.41681 1.41943 1.52286 2.21955 2.42559 2.58095 2.73088 3.20152 3.80965 3.89924 3.97469 4.03196 4.09540 4.15018 4.21554 4.23504 4.29411 4.43968 4.65326 4.71028 4.73442 4.74199 4.75817 4.81231 4.88079 4.92075 4.95828 4.99627 5.10015 5.12550 5.22907 5.30725 5.34259 5.38107 5.42550 5.47603 5.50033 5.55099 5.62973 5.79946 5.89609 6.12719 6.33188 6.57909 6.86935 6.93415 7.45993 8.97988 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.003218 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.625388 B = 8698.057855 C =10743.579419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.177 4.177 4 O -0.326 6.326 5 C 0.057 3.943 6 C -0.148 4.148 7 C -0.134 4.134 8 C -0.028 4.028 9 Cl -0.077 7.077 10 C -0.180 4.180 11 C 0.195 3.805 12 N -0.727 5.727 13 C 0.147 3.853 14 C -0.063 4.063 15 C -0.118 4.118 16 C -0.118 4.118 17 C 0.043 3.957 18 C -0.515 4.515 19 H 0.068 0.932 20 C -0.002 4.002 21 N -0.936 5.936 22 Si 0.955 3.045 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.262 1.262 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.407 0.593 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.059 0.941 45 H -0.011 1.011 46 H -0.011 1.011 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 12.570 -23.560 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.234 4.234 4 O -0.241 6.241 5 C 0.008 3.992 6 C -0.167 4.167 7 C -0.155 4.155 8 C -0.055 4.055 9 Cl -0.049 7.049 10 C -0.204 4.204 11 C 0.090 3.910 12 N -0.358 5.358 13 C 0.022 3.978 14 C -0.064 4.064 15 C -0.175 4.175 16 C -0.175 4.175 17 C 0.006 3.994 18 C -0.553 4.553 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.577 5.577 22 Si 0.781 3.219 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.186 1.186 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.180 0.820 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.245 0.755 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.008 0.992 46 H 0.007 0.993 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.444 12.305 -23.132 26.240 hybrid contribution -0.173 -0.500 1.215 1.325 sum -1.617 11.805 -21.916 24.946 Atomic orbital electron populations 1.21885 0.91709 1.03037 1.03838 1.22680 0.96005 0.92904 0.86823 1.22371 1.01883 0.95443 1.03724 1.86064 1.28671 1.68968 1.40423 1.18536 0.87095 0.98629 0.94937 1.21189 0.94299 1.03338 0.97894 1.20788 0.96548 0.99425 0.98702 1.20575 0.87406 1.00950 0.96567 1.98349 1.24746 1.83444 1.98335 1.20350 0.93506 1.06816 0.99743 1.17240 0.91032 0.95414 0.87281 1.44642 1.18872 1.56999 1.15311 1.21250 0.96464 0.93898 0.86183 1.20662 0.95073 0.96608 0.94045 1.21641 1.00935 0.94673 1.00282 1.21645 0.96832 0.99311 0.99756 1.18943 0.95031 0.93203 0.92272 1.21586 1.02062 1.30328 1.01366 0.91427 1.25891 0.97303 0.95616 1.01108 1.70101 1.24763 1.34762 1.28107 0.85590 0.79156 0.78840 0.78345 1.20147 1.21378 1.18644 0.92121 0.88239 0.92329 0.89796 0.92238 0.88845 0.92412 0.81970 0.83076 0.85561 0.75520 0.93390 0.93341 0.92267 0.92960 0.94274 0.94242 0.92924 0.92238 0.99244 0.99264 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.56 71.98 0.69 -1.09 16 2 C 0.07 1.03 2.84 30.59 0.09 1.12 16 3 C -0.18 -2.12 9.17 71.98 0.66 -1.46 16 4 O -0.33 -7.22 9.05 -93.91 -0.85 -8.07 16 5 C 0.06 1.36 6.62 22.59 0.15 1.50 16 6 C -0.15 -2.81 8.25 22.34 0.18 -2.63 16 7 C -0.13 -2.69 9.82 22.31 0.22 -2.47 16 8 C -0.03 -0.68 6.32 22.32 0.14 -0.54 16 9 Cl -0.08 -1.83 28.95 -2.72 -0.08 -1.91 16 10 C -0.18 -5.09 9.09 22.41 0.20 -4.89 16 11 C 0.20 5.50 6.67 38.22 0.25 5.76 16 12 N -0.73 -21.64 5.13 -338.98 -1.74 -23.38 16 13 C 0.15 5.06 3.81 86.38 0.33 5.39 16 14 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 15 C -0.12 -4.26 8.05 71.98 0.58 -3.68 16 16 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 17 C 0.04 2.18 4.04 29.85 0.12 2.30 16 18 C -0.52 -27.91 7.65 25.60 0.20 -27.71 16 19 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 21 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16 22 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.08 0.99 6.31 -2.38 -0.02 0.98 16 30 H 0.06 0.77 6.92 -2.38 -0.02 0.76 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.16 2.07 5.42 -2.91 -0.02 2.06 16 34 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.13 3.81 6.74 -2.92 -0.02 3.79 16 36 H 0.41 11.67 5.53 -92.71 -0.51 11.16 16 37 H 0.05 1.72 7.94 -2.39 -0.02 1.70 16 38 H 0.05 1.74 7.96 -2.39 -0.02 1.72 16 39 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 40 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 41 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 44 H 0.06 1.79 6.86 -2.39 -0.02 1.77 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -62.91 382.31 4.92 -57.99 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.45 Total: 20.06 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 4.83 Total: -34.22 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.46 Total: -79.80 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.85 Total: -8.07 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -62.91 4.92 -57.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589518787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.394 kcal (2) G-P(sol) polarization free energy of solvation -62.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds