Wall clock time and date at job start Tue Mar 31 2020 14:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.43209 * 2 1 4 4 C 1.53393 * 109.42684 * 240.09853 * 2 1 3 5 5 C 1.50883 * 108.18961 * 189.41493 * 4 2 1 6 6 C 1.34568 * 128.32762 * 196.71356 * 5 4 2 7 7 N 1.35204 * 107.61869 * 179.83987 * 6 5 4 8 8 H 0.97001 * 126.00346 * 179.97438 * 7 6 5 9 9 N 1.40309 * 107.99213 * 0.25031 * 7 6 5 10 10 C 1.30129 * 108.12478 * 359.61430 * 9 7 6 11 11 C 1.50947 * 128.29147 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.71566 * 77.40759 * 11 10 9 13 13 C 1.50703 * 109.75014 * 316.79195 * 11 10 9 14 14 O 1.21281 * 120.00185 * 241.22508 * 13 11 10 15 15 N 1.34776 * 120.00263 * 61.22120 * 13 11 10 16 16 C 1.39237 * 120.00417 * 175.71579 * 15 13 11 17 17 C 1.39479 * 119.83497 * 215.00639 * 16 15 13 18 18 C 1.36376 * 120.16626 * 179.72104 * 17 16 15 19 19 C 1.40870 * 119.82813 * 0.56739 * 18 17 16 20 20 C 1.41154 * 120.16106 * 179.72595 * 19 18 17 21 21 H 1.08004 * 119.99869 * 214.77630 * 20 19 18 22 22 C 1.39903 * 120.00312 * 34.77680 * 20 19 18 23 23 N 1.30873 * 119.99696 * 355.53068 * 22 20 19 24 24 Si 1.86796 * 120.00076 * 175.53346 * 22 20 19 25 25 H 1.48497 * 109.47258 * 59.99780 * 24 22 20 26 26 H 1.48503 * 109.47149 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47070 * 299.99968 * 24 22 20 28 28 C 1.40866 * 119.67447 * 359.70587 * 19 18 17 29 29 C 1.36379 * 119.82471 * 359.97438 * 28 19 18 30 30 C 1.53028 * 109.39109 * 119.87758 * 2 1 3 31 31 H 1.09001 * 109.46952 * 179.89869 * 1 2 3 32 32 H 1.09001 * 109.46650 * 299.89908 * 1 2 3 33 33 H 1.08999 * 109.46680 * 59.89868 * 1 2 3 34 34 H 1.09004 * 109.71601 * 69.74480 * 4 2 1 35 35 H 1.08996 * 109.72546 * 309.09044 * 4 2 1 36 36 H 1.07999 * 126.19591 * 359.82040 * 6 5 4 37 37 H 0.97001 * 119.99885 * 355.71942 * 15 13 11 38 38 H 1.07996 * 119.91850 * 359.97438 * 17 16 15 39 39 H 1.08001 * 120.08575 * 180.29743 * 18 17 16 40 40 H 0.97005 * 119.99213 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.08897 * 180.02562 * 28 19 18 42 42 H 1.08002 * 119.91325 * 180.02562 * 29 28 19 43 43 H 1.09004 * 109.41910 * 311.85870 * 30 2 1 44 44 H 1.08998 * 109.42514 * 71.73922 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0402 -0.7211 -1.2540 5 6 3.5305 -0.9114 -1.1145 6 6 4.4274 -1.2072 -2.0730 7 7 5.6442 -1.2768 -1.4876 8 1 6.4818 -1.4746 -1.9350 9 7 5.4815 -1.0189 -0.1180 10 6 4.2190 -0.7955 0.1047 11 6 3.5432 -0.4729 1.4153 12 1 3.7195 0.5715 1.6726 13 6 4.0885 -1.3631 2.5022 14 8 3.3494 -2.1224 3.0920 15 7 5.3977 -1.3154 2.8187 16 6 5.8850 -2.0715 3.8816 17 6 6.9154 -1.5687 4.6759 18 6 7.3939 -2.3010 5.7221 19 6 6.8530 -3.5734 5.9922 20 6 7.3470 -4.3398 7.0697 21 1 7.3997 -5.4155 6.9879 22 6 7.7683 -3.7062 8.2437 23 7 7.7869 -2.3994 8.3115 24 14 8.3043 -4.7254 9.7145 25 1 9.4592 -5.5770 9.3322 26 1 8.7018 -3.8222 10.8243 27 1 7.1785 -5.5873 10.1562 28 6 5.8165 -4.0769 5.1820 29 6 5.3438 -3.3301 4.1434 30 6 2.0381 -0.7191 1.2516 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3633 0.5123 0.8909 33 1 -0.3633 0.5154 -0.8891 34 1 1.8275 -0.1184 -2.1370 35 1 1.5525 -1.6917 -1.3443 36 1 4.2141 -1.3614 -3.1204 37 1 6.0005 -0.7544 2.3062 38 1 7.3325 -0.5952 4.4645 39 1 8.1885 -1.9084 6.3392 40 1 8.0787 -1.9601 9.1257 41 1 5.3966 -5.0513 5.3834 42 1 4.5489 -3.7145 3.5215 43 1 1.5114 -0.3389 2.1269 44 1 1.8546 -1.7891 1.1546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590416536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:24 Heat of formation + Delta-G solvation = 45.332738 kcal Electronic energy + Delta-G solvation = -26791.189876 eV Core-core repulsion = 23094.925499 eV Total energy + Delta-G solvation = -3696.264377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.73116 -39.57309 -37.58197 -36.73681 -34.32342 -33.18831 -32.44896 -31.08803 -29.92031 -29.49900 -28.71709 -26.31660 -25.42837 -23.98269 -21.97497 -21.33936 -20.92098 -20.50296 -19.61753 -18.80226 -17.79394 -17.26272 -16.73028 -16.13613 -15.70399 -15.13490 -14.75634 -14.62645 -14.27964 -14.01996 -13.83390 -13.53569 -13.31797 -13.03134 -12.60496 -12.54821 -12.53076 -12.15356 -12.03744 -11.66792 -11.62073 -11.35640 -11.25861 -11.06995 -10.93974 -10.84387 -10.71546 -10.66595 -10.49374 -9.99903 -9.66016 -9.40310 -9.30647 -8.98299 -8.76128 -8.55943 -7.46572 -6.76606 -6.55280 -4.27438 1.74436 2.45843 2.63701 2.72703 3.10868 3.12356 3.15819 3.17026 3.44292 3.82982 4.02943 4.27897 4.48685 4.71379 4.76117 4.77672 4.93316 5.04875 5.27417 5.30961 5.36439 5.47624 5.54824 5.58091 5.71352 5.74397 5.76999 5.87757 5.97770 6.09795 6.14135 6.28130 6.37318 6.45047 6.53622 6.86245 7.02522 7.13289 7.14278 7.29705 7.37869 7.50802 7.71531 7.84825 7.95611 8.13283 8.37260 8.40768 8.69617 8.86248 8.99355 9.08620 10.35786 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002661 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.863628 B =10521.272490 C =11124.087838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.035 4.035 5 C -0.230 4.230 6 C 0.058 3.942 7 N -0.480 5.480 8 H 0.440 0.560 9 N -0.277 5.277 10 C 0.088 3.912 11 C -0.026 4.026 12 H 0.111 0.889 13 C 0.509 3.491 14 O -0.529 6.529 15 N -0.641 5.641 16 C 0.010 3.990 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.074 0.926 22 C 0.069 3.931 23 N -0.813 5.813 24 Si 0.915 3.085 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.267 1.267 28 C -0.205 4.205 29 C -0.087 4.087 30 C -0.091 4.091 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.400 0.600 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.277 0.723 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.027 7.255 -19.925 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.074 4.074 5 C -0.241 4.241 6 C -0.087 4.087 7 N -0.189 5.189 8 H 0.284 0.716 9 N -0.099 5.099 10 C -0.081 4.081 11 C -0.049 4.049 12 H 0.129 0.871 13 C 0.294 3.706 14 O -0.406 6.406 15 N -0.283 5.283 16 C -0.082 4.082 17 C -0.142 4.142 18 C -0.161 4.161 19 C 0.096 3.904 20 C -0.493 4.493 21 H 0.092 0.908 22 C -0.145 4.145 23 N -0.441 5.441 24 Si 0.740 3.260 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.191 1.191 28 C -0.225 4.225 29 C -0.106 4.106 30 C -0.130 4.130 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.193 0.807 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.149 0.851 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.343 6.840 -18.832 21.339 hybrid contribution 0.320 -0.109 -0.231 0.409 sum -7.023 6.731 -19.063 21.402 Atomic orbital electron populations 1.21817 0.94687 1.02114 1.01716 1.21185 0.95667 0.99677 0.94350 0.90931 1.20070 0.89161 1.00411 0.97716 1.20072 0.97340 1.14594 0.92102 1.22032 0.85457 1.01960 0.99278 1.46305 1.08696 1.57885 1.05999 0.71612 1.77024 1.18027 1.22003 0.92808 1.21908 0.90909 0.99755 0.95517 1.19969 0.96070 1.00745 0.88116 0.87080 1.20133 0.82501 0.83990 0.83992 1.90679 1.57910 1.38995 1.53016 1.42987 1.08079 1.45490 1.31792 1.17302 1.03408 0.93151 0.94365 1.20320 0.98736 0.98498 0.96633 1.21183 1.01953 0.96638 0.96293 1.17702 0.89185 0.92487 0.90990 1.19446 1.37273 0.94699 0.97920 0.90751 1.25863 0.93184 0.95121 1.00344 1.69763 1.37043 1.09048 1.28237 0.86261 0.79683 0.80040 0.79990 1.19129 1.20475 1.19136 1.20801 1.00524 1.00686 1.00492 1.20392 0.99386 0.92488 0.98376 1.21472 0.91153 1.02475 0.97872 0.92423 0.92382 0.92695 0.91266 0.91089 0.80716 0.76520 0.89139 0.85059 0.91181 0.88698 0.87586 0.90258 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.15 37.16 0.34 -0.74 16 2 C -0.09 -0.80 2.67 -90.40 -0.24 -1.04 16 3 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 4 C -0.04 -0.30 5.57 -27.59 -0.15 -0.45 16 5 C -0.23 -2.45 5.89 -104.98 -0.62 -3.07 16 6 C 0.06 0.50 11.95 -17.36 -0.21 0.30 16 7 N -0.48 -4.77 7.37 30.35 0.22 -4.54 16 8 H 0.44 2.97 8.96 -182.44 -1.64 1.33 16 9 N -0.28 -3.82 11.45 33.75 0.39 -3.43 16 10 C 0.09 1.17 6.39 -82.34 -0.53 0.65 16 11 C -0.03 -0.35 2.91 -92.60 -0.27 -0.62 16 12 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.51 9.51 6.96 -10.98 -0.08 9.43 16 14 O -0.53 -11.76 13.26 5.56 0.07 -11.69 16 15 N -0.64 -12.49 5.05 -9.74 -0.05 -12.54 16 16 C 0.01 0.24 6.31 -83.57 -0.53 -0.29 16 17 C -0.12 -2.92 9.90 -39.79 -0.39 -3.31 16 18 C -0.14 -3.75 8.62 -39.26 -0.34 -4.09 16 19 C 0.10 2.74 5.55 -106.80 -0.59 2.15 16 20 C -0.46 -12.69 9.02 -37.85 -0.34 -13.03 16 21 H 0.07 1.96 7.85 -52.48 -0.41 1.55 16 22 C 0.07 1.81 5.42 -17.34 -0.09 1.71 16 23 N -0.81 -21.69 10.59 55.55 0.59 -21.10 16 24 Si 0.92 19.49 29.56 -169.99 -5.03 14.46 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C -0.20 -5.41 9.74 -39.26 -0.38 -5.79 16 29 C -0.09 -2.18 8.61 -39.79 -0.34 -2.53 16 30 C -0.09 -1.09 3.92 -26.52 -0.10 -1.20 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.40 6.87 7.84 -40.82 -0.32 6.55 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.13 3.59 6.13 -52.49 -0.32 3.27 16 40 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 41 H 0.09 2.38 8.06 -52.49 -0.42 1.95 16 42 H 0.11 2.66 6.22 -52.49 -0.33 2.34 16 43 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.08 1.09 7.75 -51.93 -0.40 0.68 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -32.99 359.43 -10.45 -43.44 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.20 Total: 11.92 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -4.87 Total: -21.93 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 1.15 Total: -41.62 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.99 -10.45 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590416536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.770 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds