Wall clock time and date at job start Tue Mar 31 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.43209 * 2 1 4 4 C 1.53393 * 109.42684 * 240.09853 * 2 1 3 5 5 C 1.50883 * 108.18961 * 189.41493 * 4 2 1 6 6 C 1.34568 * 128.32762 * 196.71356 * 5 4 2 7 7 N 1.35204 * 107.61869 * 179.83987 * 6 5 4 8 8 H 0.97001 * 126.00346 * 179.97438 * 7 6 5 9 9 N 1.40309 * 107.99213 * 0.25031 * 7 6 5 10 10 C 1.30129 * 108.12478 * 359.61430 * 9 7 6 11 11 C 1.50947 * 128.29147 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.71566 * 77.40759 * 11 10 9 13 13 C 1.50703 * 109.75014 * 316.79195 * 11 10 9 14 14 O 1.21281 * 120.00185 * 241.22508 * 13 11 10 15 15 N 1.34776 * 120.00263 * 61.22120 * 13 11 10 16 16 C 1.39237 * 120.00417 * 175.71579 * 15 13 11 17 17 C 1.39479 * 119.83497 * 215.00639 * 16 15 13 18 18 C 1.36376 * 120.16626 * 179.72104 * 17 16 15 19 19 C 1.40870 * 119.82813 * 0.56739 * 18 17 16 20 20 C 1.41154 * 120.16106 * 179.72595 * 19 18 17 21 21 H 1.08004 * 119.99869 * 214.77630 * 20 19 18 22 22 C 1.39903 * 120.00312 * 34.77680 * 20 19 18 23 23 N 1.30873 * 119.99696 * 355.53068 * 22 20 19 24 24 Si 1.86796 * 120.00076 * 175.53346 * 22 20 19 25 25 H 1.48497 * 109.47258 * 59.99780 * 24 22 20 26 26 H 1.48503 * 109.47149 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47070 * 299.99968 * 24 22 20 28 28 C 1.40866 * 119.67447 * 359.70587 * 19 18 17 29 29 C 1.36379 * 119.82471 * 359.97438 * 28 19 18 30 30 C 1.53028 * 109.39109 * 119.87758 * 2 1 3 31 31 H 1.09001 * 109.46952 * 179.89869 * 1 2 3 32 32 H 1.09001 * 109.46650 * 299.89908 * 1 2 3 33 33 H 1.08999 * 109.46680 * 59.89868 * 1 2 3 34 34 H 1.09004 * 109.71601 * 69.74480 * 4 2 1 35 35 H 1.08996 * 109.72546 * 309.09044 * 4 2 1 36 36 H 1.07999 * 126.19591 * 359.82040 * 6 5 4 37 37 H 0.97001 * 119.99885 * 355.71942 * 15 13 11 38 38 H 1.07996 * 119.91850 * 359.97438 * 17 16 15 39 39 H 1.08001 * 120.08575 * 180.29743 * 18 17 16 40 40 H 0.97005 * 119.99213 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.08897 * 180.02562 * 28 19 18 42 42 H 1.08002 * 119.91325 * 180.02562 * 29 28 19 43 43 H 1.09004 * 109.41910 * 311.85870 * 30 2 1 44 44 H 1.08998 * 109.42514 * 71.73922 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0402 -0.7211 -1.2540 5 6 3.5305 -0.9114 -1.1145 6 6 4.4274 -1.2072 -2.0730 7 7 5.6442 -1.2768 -1.4876 8 1 6.4818 -1.4746 -1.9350 9 7 5.4815 -1.0189 -0.1180 10 6 4.2190 -0.7955 0.1047 11 6 3.5432 -0.4729 1.4153 12 1 3.7195 0.5715 1.6726 13 6 4.0885 -1.3631 2.5022 14 8 3.3494 -2.1224 3.0920 15 7 5.3977 -1.3154 2.8187 16 6 5.8850 -2.0715 3.8816 17 6 6.9154 -1.5687 4.6759 18 6 7.3939 -2.3010 5.7221 19 6 6.8530 -3.5734 5.9922 20 6 7.3470 -4.3398 7.0697 21 1 7.3997 -5.4155 6.9879 22 6 7.7683 -3.7062 8.2437 23 7 7.7869 -2.3994 8.3115 24 14 8.3043 -4.7254 9.7145 25 1 9.4592 -5.5770 9.3322 26 1 8.7018 -3.8222 10.8243 27 1 7.1785 -5.5873 10.1562 28 6 5.8165 -4.0769 5.1820 29 6 5.3438 -3.3301 4.1434 30 6 2.0381 -0.7191 1.2516 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3633 0.5123 0.8909 33 1 -0.3633 0.5154 -0.8891 34 1 1.8275 -0.1184 -2.1370 35 1 1.5525 -1.6917 -1.3443 36 1 4.2141 -1.3614 -3.1204 37 1 6.0005 -0.7544 2.3062 38 1 7.3325 -0.5952 4.4645 39 1 8.1885 -1.9084 6.3392 40 1 8.0787 -1.9601 9.1257 41 1 5.3966 -5.0513 5.3834 42 1 4.5489 -3.7145 3.5215 43 1 1.5114 -0.3389 2.1269 44 1 1.8546 -1.7891 1.1546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590416536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:23 Heat of formation + Delta-G solvation = 25.451123 kcal Electronic energy + Delta-G solvation = -26792.052008 eV Core-core repulsion = 23094.925499 eV Total energy + Delta-G solvation = -3697.126509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60295 -41.12935 -39.23373 -37.84860 -36.14702 -34.81184 -33.68121 -31.84577 -31.50623 -30.96694 -30.49636 -27.18158 -26.90463 -25.30038 -23.44168 -22.96167 -22.24201 -21.59764 -21.00410 -19.81110 -19.27667 -18.57940 -18.29115 -17.74350 -17.03096 -16.73680 -15.89751 -15.76123 -15.57531 -15.31681 -15.00929 -14.85265 -14.63997 -14.34772 -14.08143 -13.91458 -13.73630 -13.57384 -13.26539 -13.17440 -12.96287 -12.84772 -12.76818 -12.49636 -12.46266 -12.09536 -11.82828 -11.59986 -11.48381 -11.42580 -11.35895 -11.19673 -10.83055 -10.64047 -10.31205 -9.49891 -9.32447 -8.74216 -8.51109 -6.34275 0.74847 0.96310 1.10744 1.38727 1.43647 1.50948 1.64017 1.77831 2.03256 2.23499 2.38183 2.79470 3.40156 3.57593 3.65479 3.81432 3.96500 4.12119 4.30598 4.32776 4.36547 4.43754 4.51361 4.61597 4.74048 4.84778 4.90375 4.92130 4.99602 5.05652 5.10151 5.13067 5.16775 5.29223 5.32059 5.33209 5.42051 5.46587 5.61861 5.65732 5.67667 5.89034 6.00349 6.11427 6.36240 6.49198 6.64399 6.67108 6.71478 6.94993 6.97845 7.34794 8.41732 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002661 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.863628 B =10521.272490 C =11124.087838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.081 0.919 4 C -0.031 4.031 5 C -0.249 4.249 6 C 0.077 3.923 7 N -0.473 5.473 8 H 0.452 0.548 9 N -0.321 5.321 10 C 0.068 3.932 11 C -0.016 4.016 12 H 0.132 0.868 13 C 0.506 3.494 14 O -0.568 6.568 15 N -0.637 5.637 16 C 0.021 3.979 17 C -0.121 4.121 18 C -0.157 4.157 19 C 0.069 3.931 20 C -0.499 4.499 21 H 0.073 0.927 22 C 0.027 3.973 23 N -0.841 5.841 24 Si 0.990 3.010 25 H -0.258 1.258 26 H -0.267 1.267 27 H -0.265 1.265 28 C -0.220 4.220 29 C -0.097 4.097 30 C -0.088 4.088 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.222 0.778 37 H 0.413 0.587 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.285 0.715 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 8.406 -22.029 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.069 4.069 5 C -0.260 4.260 6 C -0.069 4.069 7 N -0.184 5.184 8 H 0.298 0.702 9 N -0.144 5.144 10 C -0.100 4.100 11 C -0.039 4.039 12 H 0.149 0.851 13 C 0.294 3.706 14 O -0.448 6.448 15 N -0.281 5.281 16 C -0.072 4.072 17 C -0.141 4.141 18 C -0.177 4.177 19 C 0.066 3.934 20 C -0.529 4.529 21 H 0.091 0.909 22 C -0.185 4.185 23 N -0.469 5.469 24 Si 0.811 3.189 25 H -0.182 1.182 26 H -0.191 1.191 27 H -0.190 1.190 28 C -0.240 4.240 29 C -0.117 4.117 30 C -0.126 4.126 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.251 0.749 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.785 8.019 -20.979 23.771 hybrid contribution 0.428 -0.424 0.266 0.658 sum -7.358 7.596 -20.713 23.257 Atomic orbital electron populations 1.21799 0.93502 1.02131 1.02634 1.21153 0.96531 0.99625 0.92850 0.90024 1.20115 0.87676 1.00814 0.98331 1.20412 0.98716 1.15430 0.91438 1.22741 0.84099 0.99183 1.00870 1.46365 1.10027 1.57034 1.04939 0.70151 1.76911 1.18619 1.23683 0.95181 1.21890 0.91378 1.00847 0.95892 1.19938 0.96851 1.00291 0.86819 0.85082 1.21094 0.81656 0.83667 0.84211 1.90656 1.58721 1.40802 1.54577 1.42979 1.08961 1.45202 1.30939 1.17390 1.02363 0.92722 0.94742 1.20547 0.98492 0.99375 0.95651 1.21174 1.02306 0.96906 0.97282 1.18016 0.90067 0.93476 0.91823 1.19693 1.39255 0.94853 0.99119 0.90879 1.26767 0.92559 0.96330 1.02811 1.69828 1.37156 1.10507 1.29405 0.85131 0.79303 0.78387 0.76083 1.18222 1.19120 1.18951 1.20922 1.00806 1.01135 1.01115 1.20467 0.99561 0.93337 0.98365 1.21475 0.90059 1.01435 0.99666 0.92890 0.92575 0.90679 0.88483 0.91193 0.76170 0.74947 0.86144 0.86136 0.90417 0.88532 0.87896 0.90795 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.15 71.98 0.66 -1.14 16 2 C -0.08 -1.29 2.67 -10.65 -0.03 -1.32 16 3 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 4 C -0.03 -0.43 5.57 30.04 0.17 -0.26 16 5 C -0.25 -4.65 5.89 -20.10 -0.12 -4.77 16 6 C 0.08 1.06 11.95 83.33 1.00 2.05 16 7 N -0.47 -8.29 7.37 -57.88 -0.43 -8.72 16 8 H 0.45 5.08 8.96 -213.18 -1.91 3.17 16 9 N -0.32 -8.47 11.45 -47.13 -0.54 -9.01 16 10 C 0.07 1.71 6.39 43.44 0.28 1.99 16 11 C -0.02 -0.43 2.91 -12.08 -0.04 -0.46 16 12 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 13 C 0.51 19.13 6.96 87.66 0.61 19.74 16 14 O -0.57 -26.06 13.26 -3.03 -0.04 -26.10 16 15 N -0.64 -24.90 5.05 -303.11 -1.53 -26.43 16 16 C 0.02 1.03 6.31 38.56 0.24 1.27 16 17 C -0.12 -5.85 9.90 22.13 0.22 -5.63 16 18 C -0.16 -8.60 8.62 22.48 0.19 -8.41 16 19 C 0.07 3.95 5.55 -21.28 -0.12 3.84 16 20 C -0.50 -28.33 9.02 23.39 0.21 -28.12 16 21 H 0.07 4.00 7.85 -2.91 -0.02 3.98 16 22 C 0.03 1.44 5.42 85.24 0.46 1.90 16 23 N -0.84 -45.64 10.59 21.82 0.23 -45.41 16 24 Si 0.99 40.15 29.56 68.60 2.03 42.18 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 C -0.22 -12.12 9.74 22.48 0.22 -11.91 16 29 C -0.10 -5.08 8.61 22.13 0.19 -4.89 16 30 C -0.09 -2.07 3.92 30.73 0.12 -1.95 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 36 H 0.22 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.41 14.00 7.84 -92.71 -0.73 13.27 16 38 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 39 H 0.12 6.82 6.13 -2.91 -0.02 6.80 16 40 H 0.29 14.05 8.30 -92.70 -0.77 13.28 16 41 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 42 H 0.10 5.39 6.22 -2.91 -0.02 5.37 16 43 H 0.07 1.77 8.09 -2.38 -0.02 1.75 16 44 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 Total: -1.00 -74.77 359.43 2.40 -72.36 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -1.59 Total: 39.19 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 4.27 Total: -38.07 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.27 Total: -89.57 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.04 Total: -26.10 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -74.77 2.40 -72.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590416536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.815 kcal (2) G-P(sol) polarization free energy of solvation -74.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds