Wall clock time and date at job start Tue Mar 31 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.43263 * 2 1 4 4 C 1.53389 * 109.42510 * 119.89915 * 2 1 3 5 5 C 1.50887 * 108.18909 * 170.61475 * 4 2 1 6 6 C 1.34566 * 128.32358 * 163.25007 * 5 4 2 7 7 N 1.35202 * 107.61988 * 180.28504 * 6 5 4 8 8 H 0.97005 * 126.00692 * 179.97438 * 7 6 5 9 9 N 1.40314 * 107.98937 * 359.96514 * 7 6 5 10 10 C 1.30131 * 108.12300 * 359.95741 * 9 7 6 11 11 C 1.50944 * 128.28556 * 180.13362 * 10 9 7 12 12 H 1.09008 * 109.71839 * 283.07395 * 11 10 9 13 13 C 1.50705 * 109.71572 * 43.67118 * 11 10 9 14 14 O 1.21282 * 119.99552 * 120.00133 * 13 11 10 15 15 N 1.34776 * 120.00322 * 300.27566 * 13 11 10 16 16 C 1.39238 * 119.99843 * 175.42550 * 15 13 11 17 17 C 1.39476 * 119.83281 * 215.02834 * 16 15 13 18 18 C 1.36374 * 120.17124 * 179.76510 * 17 16 15 19 19 C 1.40872 * 119.82277 * 0.49447 * 18 17 16 20 20 C 1.41150 * 120.15999 * 179.78884 * 19 18 17 21 21 H 1.08007 * 119.99545 * 214.74870 * 20 19 18 22 22 C 1.39903 * 120.00447 * 34.74821 * 20 19 18 23 23 N 1.30869 * 119.99834 * 355.59715 * 22 20 19 24 24 Si 1.86804 * 120.00019 * 175.59171 * 22 20 19 25 25 H 1.48497 * 109.47313 * 60.00161 * 24 22 20 26 26 H 1.48502 * 109.47157 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47200 * 299.99831 * 24 22 20 28 28 C 1.40869 * 119.67493 * 359.75700 * 19 18 17 29 29 C 1.36372 * 119.82535 * 0.02562 * 28 19 18 30 30 C 1.53023 * 109.43036 * 240.15031 * 2 1 3 31 31 H 1.08996 * 109.47197 * 300.10215 * 1 2 3 32 32 H 1.09002 * 109.46796 * 60.10534 * 1 2 3 33 33 H 1.08995 * 109.47212 * 180.10120 * 1 2 3 34 34 H 1.08991 * 109.72254 * 50.94188 * 4 2 1 35 35 H 1.09002 * 109.71641 * 290.28605 * 4 2 1 36 36 H 1.08002 * 126.19711 * 0.25197 * 6 5 4 37 37 H 0.97002 * 119.99510 * 355.42829 * 15 13 11 38 38 H 1.08008 * 119.91459 * 0.02562 * 17 16 15 39 39 H 1.08000 * 120.09311 * 180.28464 * 18 17 16 40 40 H 0.96996 * 119.99810 * 179.97438 * 23 22 20 41 41 H 1.08004 * 120.08358 * 180.02562 * 28 19 18 42 42 H 1.08002 * 119.91401 * 179.97438 * 29 28 19 43 43 H 1.09006 * 109.42543 * 48.11537 * 30 2 1 44 44 H 1.09001 * 109.42766 * 288.28557 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0402 -0.7211 1.2540 5 6 3.5306 -0.9107 1.1148 6 6 4.4275 -1.2056 2.0738 7 7 5.6447 -1.2722 1.4891 8 1 6.4826 -1.4681 1.9371 9 7 5.4832 -1.0084 0.1205 10 6 4.2195 -0.7936 -0.1039 11 6 3.5440 -0.4715 -1.4148 12 1 3.7203 0.5729 -1.6725 13 6 4.0905 -1.3622 -2.5007 14 8 3.3479 -2.1062 -3.1056 15 7 5.4053 -1.3360 -2.7957 16 6 5.9266 -2.2256 -3.7315 17 6 7.2110 -2.7412 -3.5582 18 6 7.7265 -3.6166 -4.4679 19 6 6.9623 -3.9917 -5.5903 20 6 7.4907 -4.8939 -6.5387 21 1 7.2471 -4.7815 -7.5849 22 6 8.3299 -5.9334 -6.1235 23 7 8.6945 -6.0188 -4.8696 24 14 8.9297 -7.1996 -7.3591 25 1 9.7033 -6.5196 -8.4288 26 1 9.7984 -8.1888 -6.6720 27 1 7.7639 -7.8973 -7.9585 28 6 5.6680 -3.4626 -5.7612 29 6 5.1643 -2.5917 -4.8406 30 6 2.0391 -0.7183 -1.2516 31 1 -0.3633 0.5154 0.8890 32 1 -0.3633 0.5122 -0.8910 33 1 -0.3633 -1.0276 0.0018 34 1 1.5529 -1.6918 1.3440 35 1 1.8270 -0.1186 2.1370 36 1 4.2138 -1.3605 3.1210 37 1 5.9884 -0.6975 -2.3561 38 1 7.7971 -2.4497 -2.6991 39 1 8.7194 -4.0187 -4.3301 40 1 9.2761 -6.7398 -4.5817 41 1 5.0762 -3.7460 -6.6191 42 1 4.1723 -2.1848 -4.9704 43 1 1.5125 -0.3383 -2.1271 44 1 1.8556 -1.7884 -1.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590416537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:27 Heat of formation + Delta-G solvation = 45.395165 kcal Electronic energy + Delta-G solvation = -26885.826863 eV Core-core repulsion = 23189.565193 eV Total energy + Delta-G solvation = -3696.261670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.68847 -39.56644 -37.57089 -36.72675 -34.32089 -33.17639 -32.43489 -31.05523 -29.89012 -29.48976 -28.71539 -26.29129 -25.42244 -23.97397 -21.96551 -21.30827 -20.90251 -20.48877 -19.57007 -18.84715 -17.75995 -17.27039 -16.66581 -16.12122 -15.70326 -15.11175 -14.74345 -14.62005 -14.26360 -14.01287 -13.86428 -13.49609 -13.24400 -13.04358 -12.60808 -12.56035 -12.51141 -12.12045 -12.02984 -11.66601 -11.61329 -11.34549 -11.25384 -11.05962 -10.93916 -10.82675 -10.72082 -10.65387 -10.46571 -9.98540 -9.62406 -9.39230 -9.30546 -8.98118 -8.74984 -8.52032 -7.45666 -6.76406 -6.55008 -4.27304 1.79561 2.49974 2.65097 2.76188 3.11038 3.12225 3.15689 3.17499 3.44622 3.83337 4.02847 4.31010 4.51242 4.73000 4.77080 4.78188 4.95925 5.05665 5.27851 5.31996 5.39013 5.48861 5.55851 5.59939 5.72525 5.73979 5.79147 5.89319 5.98805 6.10521 6.15295 6.31024 6.38617 6.48860 6.54102 6.86837 7.03379 7.14332 7.18118 7.30008 7.38144 7.55794 7.72042 7.85132 7.95983 8.13705 8.37614 8.41327 8.70094 8.86328 8.99596 9.08994 10.35962 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.002837 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.028657 B = 9868.796571 C =10660.411119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.035 4.035 5 C -0.230 4.230 6 C 0.058 3.942 7 N -0.480 5.480 8 H 0.440 0.560 9 N -0.273 5.273 10 C 0.087 3.913 11 C -0.025 4.025 12 H 0.110 0.890 13 C 0.508 3.492 14 O -0.529 6.529 15 N -0.640 5.640 16 C 0.010 3.990 17 C -0.119 4.119 18 C -0.142 4.142 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.814 5.814 24 Si 0.915 3.085 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.267 1.267 28 C -0.205 4.205 29 C -0.088 4.088 30 C -0.091 4.091 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.175 0.825 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.277 0.723 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.197 11.981 15.458 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.074 4.074 5 C -0.242 4.242 6 C -0.087 4.087 7 N -0.189 5.189 8 H 0.284 0.716 9 N -0.095 5.095 10 C -0.082 4.082 11 C -0.048 4.048 12 H 0.128 0.872 13 C 0.293 3.707 14 O -0.406 6.406 15 N -0.282 5.282 16 C -0.082 4.082 17 C -0.139 4.139 18 C -0.162 4.162 19 C 0.096 3.904 20 C -0.493 4.493 21 H 0.093 0.907 22 C -0.145 4.145 23 N -0.441 5.441 24 Si 0.740 3.260 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.191 1.191 28 C -0.225 4.225 29 C -0.108 4.108 30 C -0.130 4.130 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.192 0.808 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.149 0.851 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.425 11.219 14.699 20.320 hybrid contribution 0.423 -0.541 0.622 0.926 sum -8.002 10.679 15.321 20.317 Atomic orbital electron populations 1.21816 0.94707 1.02126 1.01677 1.21179 0.95629 0.99641 0.94387 0.90962 1.20065 0.89217 1.00407 0.97671 1.20057 0.97299 1.14727 0.92107 1.22026 0.85491 1.01959 0.99274 1.46318 1.08666 1.57761 1.06117 0.71603 1.77052 1.17983 1.21701 0.92732 1.21869 0.90929 0.99976 0.95433 1.19932 0.96054 1.00601 0.88232 0.87192 1.20143 0.82918 0.83770 0.83830 1.90679 1.57641 1.40249 1.52052 1.42956 1.08301 1.35967 1.40969 1.17303 0.96024 1.02204 0.92684 1.20330 0.94672 0.99571 0.99369 1.21184 1.01040 0.97569 0.96358 1.17706 0.89905 0.90026 0.92749 1.19447 1.24880 1.09812 0.95195 0.90726 1.25866 0.94154 0.98774 0.95724 1.69764 1.28266 1.30108 1.16011 0.86264 0.79123 0.79888 0.80718 1.19090 1.20512 1.19140 1.20798 0.96228 1.04580 1.00905 1.20400 0.98587 0.99011 0.92803 1.21463 0.91143 1.02531 0.97825 0.92694 0.92419 0.92415 0.91106 0.91283 0.80752 0.76642 0.89144 0.85135 0.91221 0.88660 0.87447 0.90312 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.15 37.16 0.34 -0.74 16 2 C -0.09 -0.80 2.66 -90.40 -0.24 -1.04 16 3 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 4 C -0.04 -0.31 5.57 -27.59 -0.15 -0.46 16 5 C -0.23 -2.58 5.89 -104.98 -0.62 -3.19 16 6 C 0.06 0.54 11.95 -17.37 -0.21 0.33 16 7 N -0.48 -5.12 7.37 30.35 0.22 -4.90 16 8 H 0.44 3.34 8.96 -182.43 -1.64 1.70 16 9 N -0.27 -3.92 11.56 33.75 0.39 -3.53 16 10 C 0.09 1.19 6.39 -82.35 -0.53 0.67 16 11 C -0.02 -0.34 2.90 -92.61 -0.27 -0.61 16 12 H 0.11 1.24 8.14 -51.92 -0.42 0.82 16 13 C 0.51 9.46 6.98 -10.98 -0.08 9.38 16 14 O -0.53 -11.73 13.28 5.56 0.07 -11.66 16 15 N -0.64 -12.39 4.90 -9.74 -0.05 -12.44 16 16 C 0.01 0.24 6.30 -83.57 -0.53 -0.29 16 17 C -0.12 -2.89 9.90 -39.79 -0.39 -3.29 16 18 C -0.14 -3.79 8.62 -39.26 -0.34 -4.13 16 19 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 20 C -0.46 -12.71 9.02 -37.85 -0.34 -13.05 16 21 H 0.07 1.96 7.85 -52.48 -0.41 1.55 16 22 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 23 N -0.81 -21.86 10.59 55.55 0.59 -21.27 16 24 Si 0.91 19.54 29.56 -169.99 -5.03 14.52 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 28 C -0.21 -5.38 9.74 -39.26 -0.38 -5.77 16 29 C -0.09 -2.20 8.61 -39.79 -0.34 -2.54 16 30 C -0.09 -1.09 3.92 -26.53 -0.10 -1.20 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.40 6.76 8.09 -40.82 -0.33 6.43 16 38 H 0.09 1.98 8.06 -52.48 -0.42 1.56 16 39 H 0.13 3.60 6.13 -52.49 -0.32 3.28 16 40 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 41 H 0.10 2.37 8.06 -52.48 -0.42 1.94 16 42 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 43 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 44 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -33.20 359.70 -10.45 -43.65 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -7.21 Total: 12.28 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -4.87 Total: -22.07 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 1.15 Total: -42.14 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.20 -10.45 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590416537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.048 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds