Wall clock time and date at job start Tue Mar 31 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.43263 * 2 1 4 4 C 1.53389 * 109.42510 * 119.89915 * 2 1 3 5 5 C 1.50887 * 108.18909 * 170.61475 * 4 2 1 6 6 C 1.34566 * 128.32358 * 163.25007 * 5 4 2 7 7 N 1.35202 * 107.61988 * 180.28504 * 6 5 4 8 8 H 0.97005 * 126.00692 * 179.97438 * 7 6 5 9 9 N 1.40314 * 107.98937 * 359.96514 * 7 6 5 10 10 C 1.30131 * 108.12300 * 359.95741 * 9 7 6 11 11 C 1.50944 * 128.28556 * 180.13362 * 10 9 7 12 12 H 1.09008 * 109.71839 * 283.07395 * 11 10 9 13 13 C 1.50705 * 109.71572 * 43.67118 * 11 10 9 14 14 O 1.21282 * 119.99552 * 120.00133 * 13 11 10 15 15 N 1.34776 * 120.00322 * 300.27566 * 13 11 10 16 16 C 1.39238 * 119.99843 * 175.42550 * 15 13 11 17 17 C 1.39476 * 119.83281 * 215.02834 * 16 15 13 18 18 C 1.36374 * 120.17124 * 179.76510 * 17 16 15 19 19 C 1.40872 * 119.82277 * 0.49447 * 18 17 16 20 20 C 1.41150 * 120.15999 * 179.78884 * 19 18 17 21 21 H 1.08007 * 119.99545 * 214.74870 * 20 19 18 22 22 C 1.39903 * 120.00447 * 34.74821 * 20 19 18 23 23 N 1.30869 * 119.99834 * 355.59715 * 22 20 19 24 24 Si 1.86804 * 120.00019 * 175.59171 * 22 20 19 25 25 H 1.48497 * 109.47313 * 60.00161 * 24 22 20 26 26 H 1.48502 * 109.47157 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47200 * 299.99831 * 24 22 20 28 28 C 1.40869 * 119.67493 * 359.75700 * 19 18 17 29 29 C 1.36372 * 119.82535 * 0.02562 * 28 19 18 30 30 C 1.53023 * 109.43036 * 240.15031 * 2 1 3 31 31 H 1.08996 * 109.47197 * 300.10215 * 1 2 3 32 32 H 1.09002 * 109.46796 * 60.10534 * 1 2 3 33 33 H 1.08995 * 109.47212 * 180.10120 * 1 2 3 34 34 H 1.08991 * 109.72254 * 50.94188 * 4 2 1 35 35 H 1.09002 * 109.71641 * 290.28605 * 4 2 1 36 36 H 1.08002 * 126.19711 * 0.25197 * 6 5 4 37 37 H 0.97002 * 119.99510 * 355.42829 * 15 13 11 38 38 H 1.08008 * 119.91459 * 0.02562 * 17 16 15 39 39 H 1.08000 * 120.09311 * 180.28464 * 18 17 16 40 40 H 0.96996 * 119.99810 * 179.97438 * 23 22 20 41 41 H 1.08004 * 120.08358 * 180.02562 * 28 19 18 42 42 H 1.08002 * 119.91401 * 179.97438 * 29 28 19 43 43 H 1.09006 * 109.42543 * 48.11537 * 30 2 1 44 44 H 1.09001 * 109.42766 * 288.28557 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0402 -0.7211 1.2540 5 6 3.5306 -0.9107 1.1148 6 6 4.4275 -1.2056 2.0738 7 7 5.6447 -1.2722 1.4891 8 1 6.4826 -1.4681 1.9371 9 7 5.4832 -1.0084 0.1205 10 6 4.2195 -0.7936 -0.1039 11 6 3.5440 -0.4715 -1.4148 12 1 3.7203 0.5729 -1.6725 13 6 4.0905 -1.3622 -2.5007 14 8 3.3479 -2.1062 -3.1056 15 7 5.4053 -1.3360 -2.7957 16 6 5.9266 -2.2256 -3.7315 17 6 7.2110 -2.7412 -3.5582 18 6 7.7265 -3.6166 -4.4679 19 6 6.9623 -3.9917 -5.5903 20 6 7.4907 -4.8939 -6.5387 21 1 7.2471 -4.7815 -7.5849 22 6 8.3299 -5.9334 -6.1235 23 7 8.6945 -6.0188 -4.8696 24 14 8.9297 -7.1996 -7.3591 25 1 9.7033 -6.5196 -8.4288 26 1 9.7984 -8.1888 -6.6720 27 1 7.7639 -7.8973 -7.9585 28 6 5.6680 -3.4626 -5.7612 29 6 5.1643 -2.5917 -4.8406 30 6 2.0391 -0.7183 -1.2516 31 1 -0.3633 0.5154 0.8890 32 1 -0.3633 0.5122 -0.8910 33 1 -0.3633 -1.0276 0.0018 34 1 1.5529 -1.6918 1.3440 35 1 1.8270 -0.1186 2.1370 36 1 4.2138 -1.3605 3.1210 37 1 5.9884 -0.6975 -2.3561 38 1 7.7971 -2.4497 -2.6991 39 1 8.7194 -4.0187 -4.3301 40 1 9.2761 -6.7398 -4.5817 41 1 5.0762 -3.7460 -6.6191 42 1 4.1723 -2.1848 -4.9704 43 1 1.5125 -0.3383 -2.1271 44 1 1.8556 -1.7884 -1.1554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590416537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:26 Heat of formation + Delta-G solvation = 25.366675 kcal Electronic energy + Delta-G solvation = -26886.695364 eV Core-core repulsion = 23189.565193 eV Total energy + Delta-G solvation = -3697.130171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.59269 -41.12234 -39.22805 -37.84268 -36.14229 -34.80927 -33.67417 -31.84153 -31.50226 -30.95782 -30.49288 -27.17885 -26.90208 -25.29486 -23.45035 -22.93498 -22.23405 -21.59521 -20.99375 -19.84065 -19.28741 -18.58177 -18.24974 -17.71813 -17.01992 -16.74421 -15.92615 -15.63608 -15.62866 -15.31278 -15.19577 -14.66821 -14.61069 -14.35958 -14.08518 -13.98058 -13.67687 -13.58743 -13.26494 -13.17095 -12.94490 -12.85331 -12.76793 -12.49376 -12.46211 -12.08788 -11.83471 -11.59781 -11.47907 -11.43283 -11.30778 -11.20088 -10.82706 -10.64695 -10.29742 -9.49177 -9.32272 -8.73831 -8.51343 -6.34460 0.76721 0.96073 1.11413 1.37936 1.43408 1.50239 1.59218 1.83072 2.05018 2.22909 2.38093 2.79638 3.40876 3.57723 3.66746 3.82767 3.97179 4.11350 4.30143 4.35042 4.36037 4.44510 4.53364 4.61812 4.74357 4.84965 4.91244 4.92914 5.00425 5.05881 5.11051 5.13335 5.16854 5.29171 5.32533 5.33696 5.42384 5.47106 5.62472 5.66459 5.68382 5.89433 6.00829 6.11721 6.36483 6.49081 6.64764 6.68212 6.72069 6.94927 6.98219 7.35375 8.41345 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.002837 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.028657 B = 9868.796571 C =10660.411119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.083 0.917 4 C -0.032 4.032 5 C -0.249 4.249 6 C 0.075 3.925 7 N -0.476 5.476 8 H 0.451 0.549 9 N -0.317 5.317 10 C 0.066 3.934 11 C -0.015 4.015 12 H 0.136 0.864 13 C 0.506 3.494 14 O -0.568 6.568 15 N -0.636 5.636 16 C 0.022 3.978 17 C -0.120 4.120 18 C -0.158 4.158 19 C 0.068 3.932 20 C -0.498 4.498 21 H 0.075 0.925 22 C 0.026 3.974 23 N -0.844 5.844 24 Si 0.990 3.010 25 H -0.257 1.257 26 H -0.268 1.268 27 H -0.264 1.264 28 C -0.219 4.219 29 C -0.097 4.097 30 C -0.088 4.088 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.220 0.780 37 H 0.413 0.587 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.284 0.716 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 12.824 17.708 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.070 4.070 5 C -0.261 4.261 6 C -0.071 4.071 7 N -0.186 5.186 8 H 0.297 0.703 9 N -0.140 5.140 10 C -0.102 4.102 11 C -0.038 4.038 12 H 0.153 0.847 13 C 0.294 3.706 14 O -0.448 6.448 15 N -0.279 5.279 16 C -0.071 4.071 17 C -0.140 4.140 18 C -0.178 4.178 19 C 0.065 3.935 20 C -0.529 4.529 21 H 0.093 0.907 22 C -0.186 4.186 23 N -0.472 5.472 24 Si 0.811 3.189 25 H -0.181 1.181 26 H -0.193 1.193 27 H -0.189 1.189 28 C -0.239 4.239 29 C -0.117 4.117 30 C -0.126 4.126 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.237 0.763 37 H 0.250 0.750 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.030 12.106 16.979 22.724 hybrid contribution 0.568 -0.729 0.058 0.926 sum -8.463 11.377 17.037 22.165 Atomic orbital electron populations 1.21797 0.93479 1.02068 1.02704 1.21149 0.96526 0.99667 0.92758 0.89827 1.20120 0.87632 1.00749 0.98505 1.20419 0.98724 1.15460 0.91463 1.22734 0.84186 0.99325 1.00882 1.46387 1.09969 1.57051 1.05152 0.70250 1.76942 1.18661 1.23435 0.95003 1.21934 0.91341 1.00895 0.95992 1.19934 0.96745 1.00470 0.86654 0.84672 1.21094 0.81990 0.83530 0.84015 1.90656 1.58438 1.42042 1.53624 1.42943 1.09115 1.35572 1.40267 1.17387 0.95489 1.01609 0.92665 1.20507 0.95200 0.98809 0.99486 1.21155 1.00755 0.98714 0.97185 1.18024 0.90714 0.91007 0.93727 1.19706 1.26707 1.11161 0.95291 0.90721 1.26786 0.93654 1.00338 0.97774 1.69838 1.28602 1.30997 1.17724 0.85128 0.78635 0.77005 0.78117 1.18094 1.19262 1.18902 1.20945 0.96154 1.05200 1.01567 1.20520 0.98874 0.99145 0.93176 1.21469 0.90111 1.01260 0.99776 0.90733 0.92349 0.93045 0.91428 0.88498 0.76310 0.75034 0.86836 0.86392 0.90527 0.88279 0.87139 0.90368 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.15 71.98 0.66 -1.12 16 2 C -0.08 -1.27 2.66 -10.65 -0.03 -1.30 16 3 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 4 C -0.03 -0.46 5.57 30.04 0.17 -0.30 16 5 C -0.25 -4.92 5.89 -20.10 -0.12 -5.04 16 6 C 0.07 1.13 11.95 83.33 1.00 2.13 16 7 N -0.48 -9.09 7.37 -57.88 -0.43 -9.52 16 8 H 0.45 5.90 8.96 -213.18 -1.91 3.99 16 9 N -0.32 -8.73 11.56 -47.14 -0.55 -9.28 16 10 C 0.07 1.72 6.39 43.44 0.28 2.00 16 11 C -0.02 -0.40 2.90 -12.08 -0.04 -0.43 16 12 H 0.14 2.83 8.14 -2.38 -0.02 2.81 16 13 C 0.51 18.90 6.98 87.66 0.61 19.51 16 14 O -0.57 -25.78 13.28 -3.04 -0.04 -25.82 16 15 N -0.64 -24.61 4.90 -303.11 -1.49 -26.09 16 16 C 0.02 1.06 6.30 38.56 0.24 1.30 16 17 C -0.12 -5.91 9.90 22.13 0.22 -5.69 16 18 C -0.16 -8.76 8.62 22.48 0.19 -8.57 16 19 C 0.07 3.90 5.55 -21.28 -0.12 3.78 16 20 C -0.50 -28.31 9.02 23.39 0.21 -28.10 16 21 H 0.07 4.07 7.85 -2.91 -0.02 4.05 16 22 C 0.03 1.38 5.42 85.24 0.46 1.84 16 23 N -0.84 -46.26 10.59 21.82 0.23 -46.03 16 24 Si 0.99 40.31 29.56 68.60 2.03 42.34 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 C -0.22 -11.94 9.74 22.48 0.22 -11.72 16 29 C -0.10 -4.98 8.61 22.13 0.19 -4.79 16 30 C -0.09 -2.03 3.92 30.72 0.12 -1.91 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.41 13.77 8.09 -92.71 -0.75 13.02 16 38 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 39 H 0.12 6.77 6.13 -2.91 -0.02 6.75 16 40 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 41 H 0.10 5.15 8.06 -2.91 -0.02 5.13 16 42 H 0.11 5.55 6.22 -2.91 -0.02 5.53 16 43 H 0.08 1.77 8.09 -2.38 -0.02 1.75 16 44 H 0.05 1.47 7.77 -2.39 -0.02 1.45 16 Total: -1.00 -74.98 359.70 2.42 -72.57 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -1.61 Total: 40.23 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 4.27 Total: -38.40 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -2.23 Total: -90.91 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.04 Total: -25.82 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -74.98 2.42 -72.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590416537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.932 kcal (2) G-P(sol) polarization free energy of solvation -74.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds