Wall clock time and date at job start Tue Mar 31 2020 14:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.72870 * 2 1 4 4 C 1.54342 * 110.81632 * 236.59921 * 2 1 3 5 5 C 1.51693 * 105.02085 * 215.55709 * 4 2 1 6 6 C 1.38509 * 130.27736 * 197.08490 * 5 4 2 7 7 C 1.38060 * 120.25417 * 179.85938 * 6 5 4 8 8 C 1.38489 * 119.90282 * 359.97438 * 7 6 5 9 9 F 1.35094 * 120.05640 * 180.02562 * 8 7 6 10 10 C 1.38321 * 119.87747 * 359.97438 * 8 7 6 11 11 C 1.38234 * 109.83014 * 16.93336 * 5 4 2 12 12 C 1.51381 * 109.75510 * 0.14864 * 11 5 4 13 13 H 1.08997 * 110.29779 * 223.89171 * 12 11 5 14 14 N 1.46903 * 110.30294 * 101.74267 * 12 11 5 15 15 C 1.46900 * 110.99660 * 89.25085 * 14 12 11 16 16 C 1.50707 * 109.46918 * 180.02562 * 15 14 12 17 17 C 1.38632 * 119.74694 * 269.72577 * 16 15 14 18 18 C 1.37614 * 120.24731 * 179.76118 * 17 16 15 19 19 C 1.40715 * 119.74571 * 0.48841 * 18 17 16 20 20 C 1.41394 * 120.24599 * 179.78880 * 19 18 17 21 21 H 1.08001 * 120.00068 * 24.37160 * 20 19 18 22 22 C 1.39951 * 120.00186 * 204.37460 * 20 19 18 23 23 N 1.30821 * 119.99524 * 17.85775 * 22 20 19 24 24 Si 1.86800 * 120.00037 * 197.86415 * 22 20 19 25 25 H 1.48497 * 109.47104 * 89.99865 * 24 22 20 26 26 H 1.48506 * 109.46709 * 209.99945 * 24 22 20 27 27 H 1.48504 * 109.46891 * 329.99629 * 24 22 20 28 28 C 1.40711 * 119.50989 * 359.76396 * 19 18 17 29 29 C 1.37619 * 119.74911 * 0.02562 * 28 19 18 30 30 H 1.09005 * 109.47339 * 299.29483 * 1 2 3 31 31 H 1.09002 * 109.47457 * 179.29836 * 1 2 3 32 32 H 1.09002 * 109.47249 * 59.29391 * 1 2 3 33 33 H 1.08996 * 110.30838 * 334.34335 * 4 2 1 34 34 H 1.09003 * 110.30462 * 96.49660 * 4 2 1 35 35 H 1.08002 * 119.87476 * 359.84288 * 6 5 4 36 36 H 1.07996 * 120.05076 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.89790 * 180.02562 * 10 8 7 38 38 H 1.00901 * 110.99700 * 325.29766 * 14 12 11 39 39 H 1.09003 * 109.47168 * 299.99434 * 15 14 12 40 40 H 1.08995 * 109.47452 * 59.99697 * 15 14 12 41 41 H 1.08005 * 119.87505 * 359.97438 * 17 16 15 42 42 H 1.08001 * 120.13092 * 180.27771 * 18 17 16 43 43 H 0.97004 * 119.99335 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.12667 * 179.97438 * 28 19 18 45 45 H 1.07993 * 119.88111 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0785 -0.7942 -1.2044 5 6 3.3323 -1.4746 -0.6886 6 6 4.3888 -2.0466 -1.3778 7 6 5.4420 -2.6151 -0.6895 8 6 5.4430 -2.6132 0.6953 9 9 6.4722 -3.1681 1.3720 10 6 4.3888 -2.0412 1.3844 11 6 3.3322 -1.4722 0.6938 12 6 2.0786 -0.7944 1.2042 13 1 2.3213 -0.1185 2.0242 14 7 1.0989 -1.7976 1.6421 15 6 1.2911 -2.1381 3.0581 16 6 0.2709 -3.1680 3.4701 17 6 -0.9526 -2.7594 3.9779 18 6 -1.8936 -3.6910 4.3527 19 6 -1.6060 -5.0628 4.2284 20 6 -2.5634 -6.0290 4.6145 21 1 -3.6128 -5.7743 4.6273 22 6 -2.1511 -7.3155 4.9800 23 7 -0.9027 -7.5349 5.3040 24 14 -3.3832 -8.7193 5.0052 25 1 -3.4125 -9.3762 3.6738 26 1 -2.9841 -9.7097 6.0373 27 1 -4.7326 -8.1878 5.3248 28 6 -0.3588 -5.4659 3.7166 29 6 0.5655 -4.5168 3.3440 30 1 -0.3634 0.5029 0.8963 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3634 0.5248 -0.8836 33 1 1.3517 -1.5386 -1.5293 34 1 2.3210 -0.1182 -2.0244 35 1 4.3886 -2.0482 -2.4578 36 1 6.2639 -3.0605 -1.2303 37 1 4.3894 -2.0392 2.4644 38 1 1.1425 -2.6225 1.0626 39 1 2.2932 -2.5422 3.2018 40 1 1.1699 -1.2422 3.6669 41 1 -1.1694 -1.7059 4.0765 42 1 -2.8479 -3.3705 4.7439 43 1 -0.6169 -8.4267 5.5570 44 1 -0.1274 -6.5162 3.6174 45 1 1.5232 -4.8238 2.9506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592391653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:05 Heat of formation + Delta-G solvation = -11.508746 kcal Electronic energy + Delta-G solvation = -26483.041450 eV Core-core repulsion = 22764.392279 eV Total energy + Delta-G solvation = -3718.649171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.154 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.96949 -40.52849 -37.74770 -36.65606 -34.48493 -33.23985 -31.32281 -30.59741 -29.82762 -29.22630 -27.02993 -26.10457 -25.21130 -23.01608 -22.35358 -21.26570 -20.97199 -19.94367 -19.68282 -17.40075 -17.27620 -16.73884 -15.79962 -15.67535 -15.53925 -15.32501 -15.00896 -14.42419 -14.09069 -13.87311 -13.70809 -13.56766 -13.32543 -13.21113 -13.03401 -12.46973 -12.40657 -11.96755 -11.93425 -11.84005 -11.69747 -11.45320 -11.17152 -11.11874 -11.06844 -10.98127 -10.77986 -10.63068 -10.49955 -10.29982 -9.55669 -9.38412 -9.20337 -9.12642 -8.64126 -8.06369 -7.44127 -7.29271 -6.76366 -4.34773 0.99410 1.05713 2.74030 3.06538 3.09913 3.10476 3.18028 3.39924 3.92942 3.95821 4.27205 4.37263 4.52374 4.75435 4.78478 4.86298 4.93971 5.03096 5.15178 5.46198 5.53639 5.57265 5.63844 5.70781 5.72676 5.81332 5.87281 5.91891 5.94397 5.98396 6.08416 6.14067 6.25710 6.29531 6.38429 6.41267 6.43108 6.63132 6.75001 6.95419 7.07971 7.28041 7.32585 7.38954 7.61725 7.66711 7.89728 8.06458 8.14919 8.31294 8.64909 8.90286 8.98663 10.18136 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.002950 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.533122 B = 9490.429360 C =10597.691053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.079 4.079 5 C -0.097 4.097 6 C -0.084 4.084 7 C -0.152 4.152 8 C 0.093 3.907 9 F -0.141 7.141 10 C -0.132 4.132 11 C -0.098 4.098 12 C 0.125 3.875 13 H 0.085 0.915 14 N -0.659 5.659 15 C 0.122 3.878 16 C -0.214 4.214 17 C -0.067 4.067 18 C -0.229 4.229 19 C 0.113 3.887 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.076 3.924 23 N -0.793 5.793 24 Si 0.907 3.093 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.166 4.166 29 C -0.094 4.094 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.343 0.657 39 H 0.020 0.980 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.280 0.720 44 H 0.116 0.884 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.069 11.133 -11.851 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.115 4.115 5 C -0.098 4.098 6 C -0.102 4.102 7 C -0.171 4.171 8 C 0.074 3.926 9 F -0.119 7.119 10 C -0.152 4.152 11 C -0.100 4.100 12 C 0.014 3.986 13 H 0.103 0.897 14 N -0.287 5.287 15 C -0.006 4.006 16 C -0.216 4.216 17 C -0.086 4.086 18 C -0.248 4.248 19 C 0.111 3.889 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.142 4.142 23 N -0.418 5.418 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.186 4.186 29 C -0.113 4.113 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.744 11.393 -11.567 18.441 hybrid contribution 0.787 -1.546 0.247 1.752 sum 9.532 9.847 -11.321 17.776 Atomic orbital electron populations 1.21508 0.92812 1.03287 1.00496 1.21866 0.97432 0.97809 0.92863 0.90423 1.21259 0.93340 0.98619 0.98328 1.20796 0.96154 0.98681 0.94208 1.20456 0.92458 0.97362 0.99953 1.21008 1.00663 1.03169 0.92248 1.17531 0.86344 0.98575 0.90150 1.91498 1.56818 1.83221 1.80394 1.20653 0.93170 1.00495 1.00836 1.21313 0.95864 0.98224 0.94643 1.21182 0.85753 0.94151 0.97494 0.89672 1.61000 1.47609 1.15627 1.04511 1.20641 0.95603 0.96958 0.87373 1.18845 0.96700 0.92553 1.13464 1.20313 0.93315 0.96820 0.98155 1.20966 0.99483 0.93429 1.10968 1.17619 0.92265 0.91366 0.87675 1.19619 0.94937 0.94955 1.39786 0.90463 1.25912 0.95765 1.00066 0.92408 1.69834 1.17276 1.23347 1.31364 0.86330 0.81447 0.80250 0.78801 1.19280 1.20347 1.18604 1.21273 0.95257 0.98567 1.03469 1.20517 0.97529 0.92825 1.00424 0.92383 0.90872 0.93961 0.89617 0.90734 0.85313 0.84770 0.85062 0.83840 0.96184 0.91923 0.89480 0.89151 0.90914 0.86623 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.59 37.16 0.32 -1.00 16 2 C -0.08 -0.81 3.62 -89.22 -0.32 -1.13 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.08 -0.74 6.35 -26.69 -0.17 -0.91 16 5 C -0.10 -1.06 6.14 -104.03 -0.64 -1.70 16 6 C -0.08 -0.84 10.04 -39.55 -0.40 -1.24 16 7 C -0.15 -1.63 10.03 -39.55 -0.40 -2.02 16 8 C 0.09 1.18 7.30 -39.46 -0.29 0.89 16 9 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 10 C -0.13 -1.70 9.73 -39.47 -0.38 -2.09 16 11 C -0.10 -1.20 5.45 -104.21 -0.57 -1.77 16 12 C 0.12 1.49 3.05 -67.83 -0.21 1.29 16 13 H 0.09 1.01 7.82 -51.93 -0.41 0.61 16 14 N -0.66 -9.54 4.58 -108.11 -0.50 -10.03 16 15 C 0.12 2.04 5.64 -4.97 -0.03 2.01 16 16 C -0.21 -4.50 5.41 -104.33 -0.56 -5.06 16 17 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 18 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 19 C 0.11 3.01 5.57 -106.83 -0.60 2.42 16 20 C -0.46 -12.32 9.05 -37.74 -0.34 -12.67 16 21 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 22 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 23 N -0.79 -20.58 10.95 55.55 0.61 -19.98 16 24 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.17 -4.31 8.70 -38.87 -0.34 -4.64 16 29 C -0.09 -2.16 9.67 -39.66 -0.38 -2.54 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.91 7.25 -51.93 -0.38 0.53 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.67 7.65 -52.49 -0.40 1.27 16 38 H 0.34 5.32 8.43 -39.29 -0.33 4.98 16 39 H 0.02 0.33 7.37 -51.93 -0.38 -0.05 16 40 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 41 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 44 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 45 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -26.97 372.30 -11.83 -38.79 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.40 Total: 9.97 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: -6.16 Total: -36.17 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.11 Total: -30.01 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.97 -11.83 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592391653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.285 kcal (2) G-P(sol) polarization free energy of solvation -26.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds