Wall clock time and date at job start Tue Mar 31 2020 14:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.72870 * 2 1 4 4 C 1.54342 * 110.81632 * 236.59921 * 2 1 3 5 5 C 1.51693 * 105.02085 * 215.55709 * 4 2 1 6 6 C 1.38509 * 130.27736 * 197.08490 * 5 4 2 7 7 C 1.38060 * 120.25417 * 179.85938 * 6 5 4 8 8 C 1.38489 * 119.90282 * 359.97438 * 7 6 5 9 9 F 1.35094 * 120.05640 * 180.02562 * 8 7 6 10 10 C 1.38321 * 119.87747 * 359.97438 * 8 7 6 11 11 C 1.38234 * 109.83014 * 16.93336 * 5 4 2 12 12 C 1.51381 * 109.75510 * 0.14864 * 11 5 4 13 13 H 1.08997 * 110.29779 * 223.89171 * 12 11 5 14 14 N 1.46903 * 110.30294 * 101.74267 * 12 11 5 15 15 C 1.46900 * 110.99660 * 89.25085 * 14 12 11 16 16 C 1.50707 * 109.46918 * 180.02562 * 15 14 12 17 17 C 1.38632 * 119.74694 * 269.72577 * 16 15 14 18 18 C 1.37614 * 120.24731 * 179.76118 * 17 16 15 19 19 C 1.40715 * 119.74571 * 0.48841 * 18 17 16 20 20 C 1.41394 * 120.24599 * 179.78880 * 19 18 17 21 21 H 1.08001 * 120.00068 * 24.37160 * 20 19 18 22 22 C 1.39951 * 120.00186 * 204.37460 * 20 19 18 23 23 N 1.30821 * 119.99524 * 17.85775 * 22 20 19 24 24 Si 1.86800 * 120.00037 * 197.86415 * 22 20 19 25 25 H 1.48497 * 109.47104 * 89.99865 * 24 22 20 26 26 H 1.48506 * 109.46709 * 209.99945 * 24 22 20 27 27 H 1.48504 * 109.46891 * 329.99629 * 24 22 20 28 28 C 1.40711 * 119.50989 * 359.76396 * 19 18 17 29 29 C 1.37619 * 119.74911 * 0.02562 * 28 19 18 30 30 H 1.09005 * 109.47339 * 299.29483 * 1 2 3 31 31 H 1.09002 * 109.47457 * 179.29836 * 1 2 3 32 32 H 1.09002 * 109.47249 * 59.29391 * 1 2 3 33 33 H 1.08996 * 110.30838 * 334.34335 * 4 2 1 34 34 H 1.09003 * 110.30462 * 96.49660 * 4 2 1 35 35 H 1.08002 * 119.87476 * 359.84288 * 6 5 4 36 36 H 1.07996 * 120.05076 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.89790 * 180.02562 * 10 8 7 38 38 H 1.00901 * 110.99700 * 325.29766 * 14 12 11 39 39 H 1.09003 * 109.47168 * 299.99434 * 15 14 12 40 40 H 1.08995 * 109.47452 * 59.99697 * 15 14 12 41 41 H 1.08005 * 119.87505 * 359.97438 * 17 16 15 42 42 H 1.08001 * 120.13092 * 180.27771 * 18 17 16 43 43 H 0.97004 * 119.99335 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.12667 * 179.97438 * 28 19 18 45 45 H 1.07993 * 119.88111 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0785 -0.7942 -1.2044 5 6 3.3323 -1.4746 -0.6886 6 6 4.3888 -2.0466 -1.3778 7 6 5.4420 -2.6151 -0.6895 8 6 5.4430 -2.6132 0.6953 9 9 6.4722 -3.1681 1.3720 10 6 4.3888 -2.0412 1.3844 11 6 3.3322 -1.4722 0.6938 12 6 2.0786 -0.7944 1.2042 13 1 2.3213 -0.1185 2.0242 14 7 1.0989 -1.7976 1.6421 15 6 1.2911 -2.1381 3.0581 16 6 0.2709 -3.1680 3.4701 17 6 -0.9526 -2.7594 3.9779 18 6 -1.8936 -3.6910 4.3527 19 6 -1.6060 -5.0628 4.2284 20 6 -2.5634 -6.0290 4.6145 21 1 -3.6128 -5.7743 4.6273 22 6 -2.1511 -7.3155 4.9800 23 7 -0.9027 -7.5349 5.3040 24 14 -3.3832 -8.7193 5.0052 25 1 -3.4125 -9.3762 3.6738 26 1 -2.9841 -9.7097 6.0373 27 1 -4.7326 -8.1878 5.3248 28 6 -0.3588 -5.4659 3.7166 29 6 0.5655 -4.5168 3.3440 30 1 -0.3634 0.5029 0.8963 31 1 -0.3634 -1.0276 -0.0126 32 1 -0.3634 0.5248 -0.8836 33 1 1.3517 -1.5386 -1.5293 34 1 2.3210 -0.1182 -2.0244 35 1 4.3886 -2.0482 -2.4578 36 1 6.2639 -3.0605 -1.2303 37 1 4.3894 -2.0392 2.4644 38 1 1.1425 -2.6225 1.0626 39 1 2.2932 -2.5422 3.2018 40 1 1.1699 -1.2422 3.6669 41 1 -1.1694 -1.7059 4.0765 42 1 -2.8479 -3.3705 4.7439 43 1 -0.6169 -8.4267 5.5570 44 1 -0.1274 -6.5162 3.6174 45 1 1.5232 -4.8238 2.9506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592391653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:04 Heat of formation + Delta-G solvation = -22.026898 kcal Electronic energy + Delta-G solvation = -26483.497551 eV Core-core repulsion = 22764.392279 eV Total energy + Delta-G solvation = -3719.105272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.154 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.95574 -41.42008 -39.50875 -37.67990 -36.01051 -34.73100 -32.42054 -31.55469 -31.30480 -31.06985 -28.45543 -26.98343 -26.51097 -24.56007 -23.22434 -22.87413 -22.13580 -21.62982 -20.63556 -19.20754 -18.36577 -17.68548 -17.20073 -16.74239 -16.54852 -16.50156 -16.22871 -15.93733 -15.63413 -15.19744 -14.87125 -14.68763 -14.54821 -14.31198 -14.10198 -13.89846 -13.79889 -13.47386 -13.35414 -13.06550 -12.84462 -12.76249 -12.69676 -12.52101 -12.35616 -12.13597 -11.96997 -11.89217 -11.61239 -11.49136 -11.29331 -11.20402 -11.00633 -10.10524 -9.58083 -9.35602 -9.22198 -9.11809 -8.63719 -6.32748 0.10957 0.18395 0.95292 1.17471 1.37145 1.50447 1.51341 2.20381 2.51436 2.70799 3.06179 3.36838 3.47942 3.64767 3.84622 3.91140 4.02239 4.11333 4.19765 4.23474 4.35714 4.39015 4.59260 4.63402 4.65103 4.70756 4.77461 4.84415 4.86921 4.95046 5.05888 5.08125 5.11848 5.12698 5.16936 5.24677 5.32433 5.38641 5.42853 5.48873 5.56123 5.72322 5.76804 5.89329 5.96183 6.11604 6.17027 6.25138 6.41098 6.46208 6.71920 6.95520 7.05677 8.33194 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.002950 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.533122 B = 9490.429360 C =10597.691053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.074 4.074 3 H 0.095 0.905 4 C -0.074 4.074 5 C -0.097 4.097 6 C -0.081 4.081 7 C -0.149 4.149 8 C 0.069 3.931 9 F -0.152 7.152 10 C -0.148 4.148 11 C -0.113 4.113 12 C 0.124 3.876 13 H 0.086 0.914 14 N -0.656 5.656 15 C 0.130 3.870 16 C -0.197 4.197 17 C -0.068 4.068 18 C -0.243 4.243 19 C 0.081 3.919 20 C -0.503 4.503 21 H 0.074 0.926 22 C 0.035 3.965 23 N -0.828 5.828 24 Si 0.981 3.019 25 H -0.262 1.262 26 H -0.268 1.268 27 H -0.258 1.258 28 C -0.190 4.190 29 C -0.099 4.099 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.337 0.663 39 H 0.020 0.980 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.287 0.713 44 H 0.096 0.904 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 12.550 -13.893 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 H 0.114 0.886 4 C -0.111 4.111 5 C -0.098 4.098 6 C -0.099 4.099 7 C -0.167 4.167 8 C 0.050 3.950 9 F -0.131 7.131 10 C -0.168 4.168 11 C -0.115 4.115 12 C 0.015 3.985 13 H 0.104 0.896 14 N -0.284 5.284 15 C 0.002 3.998 16 C -0.198 4.198 17 C -0.087 4.087 18 C -0.263 4.263 19 C 0.078 3.922 20 C -0.533 4.533 21 H 0.092 0.908 22 C -0.179 4.179 23 N -0.454 5.454 24 Si 0.802 3.198 25 H -0.187 1.187 26 H -0.193 1.193 27 H -0.181 1.181 28 C -0.210 4.210 29 C -0.117 4.117 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.052 12.836 -13.613 20.785 hybrid contribution 0.813 -1.825 0.817 2.159 sum 9.865 11.011 -12.796 19.552 Atomic orbital electron populations 1.21445 0.93208 1.02082 1.00944 1.21870 0.96942 0.98467 0.92049 0.88645 1.21279 0.92365 0.98811 0.98618 1.21092 0.96833 0.98198 0.93687 1.20825 0.91470 0.96025 1.01548 1.21325 1.01517 1.02482 0.91417 1.17813 0.86382 0.99645 0.91176 1.91464 1.57274 1.83545 1.80789 1.20712 0.93976 1.01413 1.00664 1.21330 0.95779 0.98878 0.95491 1.21269 0.85322 0.93436 0.98520 0.89590 1.60927 1.48931 1.15652 1.02884 1.20519 0.94028 0.96073 0.89176 1.19270 0.97080 0.92754 1.10722 1.20625 0.92978 0.97859 0.97223 1.21179 1.00441 0.93240 1.11409 1.17943 0.92884 0.92561 0.88765 1.19853 0.94892 0.96552 1.41983 0.90785 1.26755 0.97704 1.02134 0.91347 1.69892 1.19091 1.24275 1.32114 0.85217 0.78788 0.76714 0.79069 1.18717 1.19276 1.18126 1.21220 0.96208 0.98255 1.05313 1.20713 0.97504 0.93456 1.00071 0.93336 0.92866 0.92115 0.89709 0.88192 0.82135 0.82639 0.85960 0.84511 0.96144 0.90604 0.86631 0.88704 0.90280 0.88616 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.59 71.98 0.62 -1.63 16 2 C -0.07 -1.27 3.62 -9.88 -0.04 -1.31 16 3 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.07 -1.13 6.35 30.62 0.19 -0.94 16 5 C -0.10 -1.85 6.14 -19.48 -0.12 -1.97 16 6 C -0.08 -1.36 10.04 22.29 0.22 -1.13 16 7 C -0.15 -2.87 10.03 22.29 0.22 -2.64 16 8 C 0.07 1.70 7.30 22.35 0.16 1.87 16 9 F -0.15 -4.13 17.27 44.97 0.78 -3.35 16 10 C -0.15 -3.76 9.73 22.34 0.22 -3.55 16 11 C -0.11 -2.57 5.45 -19.60 -0.11 -2.68 16 12 C 0.12 2.74 3.05 44.84 0.14 2.88 16 13 H 0.09 1.88 7.82 -2.39 -0.02 1.86 16 14 N -0.66 -18.04 4.58 -495.95 -2.27 -20.31 16 15 C 0.13 4.19 5.64 85.56 0.48 4.67 16 16 C -0.20 -8.17 5.41 -19.67 -0.11 -8.27 16 17 C -0.07 -2.96 9.67 22.22 0.21 -2.75 16 18 C -0.24 -12.11 9.80 22.73 0.22 -11.88 16 19 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 20 C -0.50 -27.85 9.05 23.46 0.21 -27.64 16 21 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 22 C 0.04 1.81 5.14 85.26 0.44 2.25 16 23 N -0.83 -44.51 10.95 21.83 0.24 -44.27 16 24 Si 0.98 39.07 29.60 68.60 2.03 41.10 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 27 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 28 C -0.19 -10.26 8.70 22.73 0.20 -10.07 16 29 C -0.10 -4.61 9.67 22.22 0.21 -4.39 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.05 1.22 7.25 -2.39 -0.02 1.20 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.12 3.19 7.65 -2.91 -0.02 3.16 16 38 H 0.34 10.09 8.43 -89.69 -0.76 9.33 16 39 H 0.02 0.66 7.37 -2.39 -0.02 0.65 16 40 H 0.08 2.28 8.01 -2.39 -0.02 2.26 16 41 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 44 H 0.10 5.46 6.15 -2.91 -0.02 5.44 16 45 H 0.09 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -60.75 372.30 4.29 -56.46 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.25 Total: 35.21 kcal Atomic # 6 Polarization: -68.11 SS G_CDS: 3.27 Total: -64.84 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -2.03 Total: -64.58 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.75 4.29 -56.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592391653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.429 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds