Wall clock time and date at job start Tue Mar 31 2020 14:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.57834 * 2 1 4 4 C 1.53266 * 109.57606 * 239.73323 * 2 1 3 5 5 C 1.53160 * 109.43669 * 189.96803 * 4 2 1 6 6 C 1.53377 * 109.22516 * 69.34864 * 5 4 2 7 7 C 1.51117 * 108.24270 * 311.14895 * 6 5 4 8 8 N 1.30566 * 127.08459 * 196.01138 * 7 6 5 9 9 C 1.33444 * 109.68845 * 179.97438 * 8 7 6 10 10 C 1.36881 * 107.83272 * 0.02562 * 9 8 7 11 11 C 1.46706 * 126.91688 * 180.02562 * 10 9 8 12 12 O 1.21698 * 119.99927 * 171.75732 * 11 10 9 13 13 N 1.34775 * 120.00011 * 351.75211 * 11 10 9 14 14 C 1.39103 * 119.99791 * 177.07203 * 13 11 10 15 15 C 1.39521 * 119.83235 * 140.33439 * 14 13 11 16 16 C 1.36359 * 120.16400 * 179.97438 * 15 14 13 17 17 C 1.40876 * 119.83208 * 359.97438 * 16 15 14 18 18 C 1.41136 * 120.16168 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99782 * 30.12406 * 18 17 16 20 20 C 1.39905 * 119.99908 * 210.13133 * 18 17 16 21 21 N 1.30877 * 119.99746 * 9.12527 * 20 18 17 22 22 Si 1.86798 * 119.99854 * 189.13269 * 20 18 17 23 23 H 1.48505 * 109.46976 * 59.99932 * 22 20 18 24 24 H 1.48505 * 109.46896 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47204 * 299.99902 * 22 20 18 26 26 C 1.40888 * 119.67917 * 359.97438 * 17 16 15 27 27 C 1.36350 * 119.82681 * 0.03057 * 26 17 16 28 28 N 1.34884 * 123.91914 * 16.31315 * 7 6 5 29 29 H 1.08998 * 109.47258 * 214.81556 * 1 2 3 30 30 H 1.09004 * 109.46857 * 334.81410 * 1 2 3 31 31 H 1.08998 * 109.47143 * 94.80866 * 1 2 3 32 32 H 1.09004 * 109.48034 * 69.98237 * 4 2 1 33 33 H 1.08997 * 109.48664 * 309.96164 * 4 2 1 34 34 H 1.08995 * 109.51152 * 309.42055 * 5 4 2 35 35 H 1.09006 * 109.55215 * 189.29299 * 5 4 2 36 36 H 1.08995 * 109.70909 * 191.46371 * 6 5 4 37 37 H 1.08995 * 109.70882 * 70.83304 * 6 5 4 38 38 H 1.08001 * 126.08938 * 179.97438 * 9 8 7 39 39 H 0.96999 * 119.99950 * 357.08085 * 13 11 10 40 40 H 1.08005 * 119.91932 * 359.72022 * 15 14 13 41 41 H 1.08005 * 120.08459 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99184 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.08156 * 180.02562 * 26 17 16 44 44 H 1.08006 * 119.91485 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2472 5 6 3.5546 -0.9456 -1.1243 6 6 3.8282 -1.9782 -0.0237 7 6 3.0395 -1.5823 1.2030 8 7 3.2110 -2.0151 2.4228 9 6 2.3237 -1.4363 3.2342 10 6 1.5527 -0.5939 2.4795 11 6 0.4499 0.2510 2.9509 12 8 -0.0559 1.0655 2.2014 13 7 -0.0032 0.1250 4.2140 14 6 -1.0073 0.9674 4.6799 15 6 -2.0158 0.4584 5.4987 16 6 -3.0031 1.2782 5.9597 17 6 -3.0027 2.6423 5.6077 18 6 -4.0209 3.4972 6.0814 19 1 -4.4913 3.3008 7.0336 20 6 -4.4209 4.5989 5.3175 21 7 -3.9840 4.7385 4.0917 22 14 -5.5784 5.8706 6.0471 23 1 -4.9534 6.4763 7.2503 24 1 -5.8461 6.9306 5.0421 25 1 -6.8555 5.2161 6.4290 26 6 -1.9804 3.1492 4.7815 27 6 -0.9998 2.3174 4.3280 28 7 2.0169 -0.7028 1.1890 29 1 -0.3634 -0.8437 0.5867 30 1 -0.3633 0.9300 0.4374 31 1 -0.3633 -0.0861 -1.0240 32 1 1.8339 -0.1259 -2.1315 33 1 1.5436 -1.6922 -1.3371 34 1 4.0385 -0.0032 -0.8679 35 1 3.9488 -1.3111 -2.0726 36 1 4.8923 -1.9911 0.2119 37 1 3.5135 -2.9660 -0.3600 38 1 2.2298 -1.6034 4.2971 39 1 0.3711 -0.5530 4.7981 40 1 -2.0169 -0.5884 5.7647 41 1 -3.7835 0.8828 6.5931 42 1 -4.2612 5.5026 3.5622 43 1 -1.9735 4.1940 4.5079 44 1 -0.2156 2.7044 3.6942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593015345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:59 Heat of formation + Delta-G solvation = 44.782655 kcal Electronic energy + Delta-G solvation = -27061.711373 eV Core-core repulsion = 23365.423142 eV Total energy + Delta-G solvation = -3696.288231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52369 -39.39123 -37.27601 -37.20054 -34.60375 -33.69255 -32.99002 -30.77924 -29.98899 -29.50803 -28.58227 -27.11485 -25.07204 -23.14918 -23.00127 -22.06275 -21.31726 -20.88992 -19.54911 -19.08451 -17.82905 -17.32338 -16.22528 -16.10298 -15.66718 -15.22820 -14.89861 -14.85471 -14.80713 -14.18469 -14.06090 -13.89548 -13.43329 -13.12212 -13.03690 -12.71385 -12.37205 -12.24047 -12.11163 -11.82201 -11.66387 -11.49915 -11.42955 -11.38422 -11.14302 -10.98492 -10.77663 -10.51840 -10.25551 -9.95672 -9.79754 -9.67112 -9.45810 -9.17746 -8.70894 -8.41408 -7.56664 -6.99968 -6.70839 -4.34982 1.40790 2.49796 2.65439 2.88540 3.04613 3.06990 3.09362 3.15131 3.65924 3.75808 3.93661 4.04741 4.25883 4.35896 4.41731 4.65521 4.88412 4.97519 5.04045 5.08197 5.20892 5.30020 5.38144 5.43989 5.47478 5.58736 5.65304 5.73615 5.76955 5.99692 6.12635 6.19715 6.33033 6.42771 6.54654 6.82923 6.97061 7.01612 7.05484 7.15457 7.25472 7.56659 7.64901 7.90757 7.93474 8.02724 8.15774 8.27680 8.59979 8.74424 8.86844 8.96957 10.22386 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.002771 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.666517 B =10101.604843 C =10934.539651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.135 3.865 3 H 0.095 0.905 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.033 4.033 7 C 0.218 3.782 8 N -0.493 5.493 9 C 0.023 3.977 10 C -0.065 4.065 11 C 0.573 3.427 12 O -0.525 6.525 13 N -0.636 5.636 14 C -0.002 4.002 15 C -0.101 4.101 16 C -0.211 4.211 17 C 0.108 3.892 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.798 5.798 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.149 4.149 27 C -0.082 4.082 28 N -0.415 5.415 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.177 0.823 39 H 0.396 0.604 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.281 0.719 43 H 0.122 0.878 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.185 -9.504 -9.291 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 H 0.113 0.887 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.072 4.072 7 C -0.044 4.044 8 N -0.212 5.212 9 C -0.131 4.131 10 C -0.183 4.183 11 C 0.360 3.640 12 O -0.404 6.404 13 N -0.279 5.279 14 C -0.094 4.094 15 C -0.122 4.122 16 C -0.231 4.231 17 C 0.105 3.895 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.424 5.424 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.169 4.169 27 C -0.102 4.102 28 N -0.096 5.096 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.194 0.806 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.306 -9.222 -9.964 18.323 hybrid contribution -1.032 0.742 0.350 1.318 sum 11.274 -8.480 -9.614 17.072 Atomic orbital electron populations 1.22567 0.91561 1.06595 1.01820 1.21693 0.97176 0.96084 0.81784 0.88726 1.22084 0.96111 1.01876 0.96927 1.21730 0.96021 0.99756 0.99096 1.20244 0.99334 0.99575 0.88048 1.23392 0.91689 0.93589 0.95753 1.69882 1.25163 1.26379 0.99757 1.22653 0.94394 0.96442 0.99624 1.20784 1.04175 1.08010 0.85357 1.16798 0.81551 0.83357 0.82282 1.90697 1.58944 1.37215 1.53503 1.42582 1.37792 1.36062 1.11427 1.17085 0.94042 0.89844 1.08395 1.20107 0.94260 0.97451 1.00338 1.20629 1.00259 0.93919 1.08292 1.17689 0.91098 0.90799 0.89881 1.19509 1.16975 1.07509 1.04982 0.90472 1.25920 0.96417 0.97988 0.94233 1.69816 1.37632 1.27553 1.07361 0.86304 0.80603 0.79793 0.79603 1.18895 1.20364 1.19052 1.21024 0.93834 0.99644 1.02357 1.20372 0.99080 0.91490 0.99263 1.45386 1.25077 1.31939 1.07227 0.92506 0.86837 0.92105 0.89116 0.90574 0.91018 0.89832 0.88527 0.89126 0.80586 0.77022 0.89047 0.88500 0.90840 0.86022 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 7.95 37.16 0.30 -2.04 16 2 C 0.13 1.62 3.33 -67.82 -0.23 1.40 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -1.07 5.04 -26.51 -0.13 -1.21 16 5 C -0.13 -0.88 5.96 -26.45 -0.16 -1.03 16 6 C -0.03 -0.28 6.33 -27.48 -0.17 -0.45 16 7 C 0.22 2.82 7.64 -155.30 -1.19 1.63 16 8 N -0.49 -7.21 11.20 -10.34 -0.12 -7.33 16 9 C 0.02 0.32 11.37 -17.34 -0.20 0.13 16 10 C -0.07 -1.03 6.46 -82.36 -0.53 -1.56 16 11 C 0.57 10.46 7.03 -12.84 -0.09 10.37 16 12 O -0.53 -11.01 10.26 5.19 0.05 -10.96 16 13 N -0.64 -11.33 5.27 -10.91 -0.06 -11.38 16 14 C 0.00 -0.04 6.17 -83.61 -0.52 -0.55 16 15 C -0.10 -2.19 9.90 -39.78 -0.39 -2.59 16 16 C -0.21 -5.03 9.74 -39.26 -0.38 -5.42 16 17 C 0.11 2.85 5.54 -106.80 -0.59 2.25 16 18 C -0.46 -12.06 9.04 -37.86 -0.34 -12.40 16 19 H 0.08 1.92 7.86 -52.49 -0.41 1.51 16 20 C 0.07 1.79 5.27 -17.33 -0.09 1.70 16 21 N -0.80 -20.87 10.84 55.55 0.60 -20.27 16 22 Si 0.91 18.68 29.57 -169.99 -5.03 13.66 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 C -0.15 -3.90 8.59 -39.26 -0.34 -4.24 16 27 C -0.08 -1.99 8.57 -39.79 -0.34 -2.33 16 28 N -0.42 -5.80 2.93 -102.72 -0.30 -6.10 16 29 H 0.06 0.89 7.42 -51.93 -0.39 0.50 16 30 H 0.11 1.95 5.38 -51.99 -0.28 1.67 16 31 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.18 1.99 7.54 -52.49 -0.40 1.59 16 39 H 0.40 5.62 7.84 -40.82 -0.32 5.30 16 40 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 41 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 43 H 0.12 3.33 6.26 -52.49 -0.33 3.00 16 44 H 0.10 2.34 6.79 -52.48 -0.36 1.98 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -30.84 353.53 -10.73 -41.58 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.82 Total: 11.81 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -5.40 Total: -16.33 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.13 Total: -45.08 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.05 Total: -10.96 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.84 -10.73 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593015345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.358 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds