Wall clock time and date at job start Tue Mar 31 2020 14:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.57834 * 2 1 4 4 C 1.53266 * 109.57606 * 239.73323 * 2 1 3 5 5 C 1.53160 * 109.43669 * 189.96803 * 4 2 1 6 6 C 1.53377 * 109.22516 * 69.34864 * 5 4 2 7 7 C 1.51117 * 108.24270 * 311.14895 * 6 5 4 8 8 N 1.30566 * 127.08459 * 196.01138 * 7 6 5 9 9 C 1.33444 * 109.68845 * 179.97438 * 8 7 6 10 10 C 1.36881 * 107.83272 * 0.02562 * 9 8 7 11 11 C 1.46706 * 126.91688 * 180.02562 * 10 9 8 12 12 O 1.21698 * 119.99927 * 171.75732 * 11 10 9 13 13 N 1.34775 * 120.00011 * 351.75211 * 11 10 9 14 14 C 1.39103 * 119.99791 * 177.07203 * 13 11 10 15 15 C 1.39521 * 119.83235 * 140.33439 * 14 13 11 16 16 C 1.36359 * 120.16400 * 179.97438 * 15 14 13 17 17 C 1.40876 * 119.83208 * 359.97438 * 16 15 14 18 18 C 1.41136 * 120.16168 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99782 * 30.12406 * 18 17 16 20 20 C 1.39905 * 119.99908 * 210.13133 * 18 17 16 21 21 N 1.30877 * 119.99746 * 9.12527 * 20 18 17 22 22 Si 1.86798 * 119.99854 * 189.13269 * 20 18 17 23 23 H 1.48505 * 109.46976 * 59.99932 * 22 20 18 24 24 H 1.48505 * 109.46896 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47204 * 299.99902 * 22 20 18 26 26 C 1.40888 * 119.67917 * 359.97438 * 17 16 15 27 27 C 1.36350 * 119.82681 * 0.03057 * 26 17 16 28 28 N 1.34884 * 123.91914 * 16.31315 * 7 6 5 29 29 H 1.08998 * 109.47258 * 214.81556 * 1 2 3 30 30 H 1.09004 * 109.46857 * 334.81410 * 1 2 3 31 31 H 1.08998 * 109.47143 * 94.80866 * 1 2 3 32 32 H 1.09004 * 109.48034 * 69.98237 * 4 2 1 33 33 H 1.08997 * 109.48664 * 309.96164 * 4 2 1 34 34 H 1.08995 * 109.51152 * 309.42055 * 5 4 2 35 35 H 1.09006 * 109.55215 * 189.29299 * 5 4 2 36 36 H 1.08995 * 109.70909 * 191.46371 * 6 5 4 37 37 H 1.08995 * 109.70882 * 70.83304 * 6 5 4 38 38 H 1.08001 * 126.08938 * 179.97438 * 9 8 7 39 39 H 0.96999 * 119.99950 * 357.08085 * 13 11 10 40 40 H 1.08005 * 119.91932 * 359.72022 * 15 14 13 41 41 H 1.08005 * 120.08459 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99184 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.08156 * 180.02562 * 26 17 16 44 44 H 1.08006 * 119.91485 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2472 5 6 3.5546 -0.9456 -1.1243 6 6 3.8282 -1.9782 -0.0237 7 6 3.0395 -1.5823 1.2030 8 7 3.2110 -2.0151 2.4228 9 6 2.3237 -1.4363 3.2342 10 6 1.5527 -0.5939 2.4795 11 6 0.4499 0.2510 2.9509 12 8 -0.0559 1.0655 2.2014 13 7 -0.0032 0.1250 4.2140 14 6 -1.0073 0.9674 4.6799 15 6 -2.0158 0.4584 5.4987 16 6 -3.0031 1.2782 5.9597 17 6 -3.0027 2.6423 5.6077 18 6 -4.0209 3.4972 6.0814 19 1 -4.4913 3.3008 7.0336 20 6 -4.4209 4.5989 5.3175 21 7 -3.9840 4.7385 4.0917 22 14 -5.5784 5.8706 6.0471 23 1 -4.9534 6.4763 7.2503 24 1 -5.8461 6.9306 5.0421 25 1 -6.8555 5.2161 6.4290 26 6 -1.9804 3.1492 4.7815 27 6 -0.9998 2.3174 4.3280 28 7 2.0169 -0.7028 1.1890 29 1 -0.3634 -0.8437 0.5867 30 1 -0.3633 0.9300 0.4374 31 1 -0.3633 -0.0861 -1.0240 32 1 1.8339 -0.1259 -2.1315 33 1 1.5436 -1.6922 -1.3371 34 1 4.0385 -0.0032 -0.8679 35 1 3.9488 -1.3111 -2.0726 36 1 4.8923 -1.9911 0.2119 37 1 3.5135 -2.9660 -0.3600 38 1 2.2298 -1.6034 4.2971 39 1 0.3711 -0.5530 4.7981 40 1 -2.0169 -0.5884 5.7647 41 1 -3.7835 0.8828 6.5931 42 1 -4.2612 5.5026 3.5622 43 1 -1.9735 4.1940 4.5079 44 1 -0.2156 2.7044 3.6942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593015345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:58 Heat of formation + Delta-G solvation = 27.725461 kcal Electronic energy + Delta-G solvation = -27062.451028 eV Core-core repulsion = 23365.423142 eV Total energy + Delta-G solvation = -3697.027886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.58448 -40.96735 -39.01091 -38.10480 -36.25501 -34.78754 -34.59305 -31.79692 -31.58772 -31.29307 -30.02402 -28.09360 -26.76920 -24.46832 -23.95481 -23.18343 -22.95610 -22.48588 -20.95019 -20.08528 -19.26839 -19.08507 -17.81937 -17.29226 -17.05971 -16.68324 -16.19596 -15.95061 -15.75534 -15.60516 -15.33360 -15.03139 -14.76903 -14.49717 -14.32107 -13.97456 -13.97056 -13.68162 -13.49628 -13.27792 -13.16726 -12.80982 -12.70912 -12.60568 -12.31850 -12.07242 -12.01571 -11.80404 -11.73009 -11.56425 -11.39352 -11.16426 -10.80217 -10.74216 -10.41574 -9.53187 -9.47830 -8.84078 -8.57791 -6.31791 0.19487 0.89121 1.12561 1.38283 1.44438 1.50404 1.51124 1.78434 2.21179 2.29570 2.36843 2.79097 3.22752 3.47208 3.58446 3.64006 3.70399 3.81852 4.02205 4.14152 4.27950 4.32070 4.40908 4.42935 4.43764 4.56670 4.69650 4.85354 4.88698 4.92290 4.93899 5.04142 5.08923 5.10612 5.20431 5.23775 5.26967 5.34128 5.45656 5.47505 5.66703 5.86563 6.06166 6.07300 6.10378 6.32520 6.60556 6.67077 6.86228 6.92593 6.98593 7.34267 8.37390 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.002771 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.666517 B =10101.604843 C =10934.539651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.085 0.915 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.035 4.035 7 C 0.228 3.772 8 N -0.518 5.518 9 C 0.037 3.963 10 C -0.100 4.100 11 C 0.573 3.427 12 O -0.558 6.558 13 N -0.630 5.630 14 C 0.015 3.985 15 C -0.097 4.097 16 C -0.218 4.218 17 C 0.075 3.925 18 C -0.494 4.494 19 H 0.082 0.918 20 C 0.027 3.973 21 N -0.837 5.837 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.170 4.170 27 C -0.093 4.093 28 N -0.422 5.422 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.202 0.798 39 H 0.416 0.584 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.285 0.715 43 H 0.099 0.901 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.500 -11.616 -10.188 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.103 0.897 4 C -0.162 4.162 5 C -0.159 4.159 6 C -0.074 4.074 7 C -0.034 4.034 8 N -0.236 5.236 9 C -0.118 4.118 10 C -0.217 4.217 11 C 0.363 3.637 12 O -0.439 6.439 13 N -0.275 5.275 14 C -0.078 4.078 15 C -0.117 4.117 16 C -0.238 4.238 17 C 0.073 3.927 18 C -0.524 4.524 19 H 0.100 0.900 20 C -0.186 4.186 21 N -0.464 5.464 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.191 4.191 27 C -0.113 4.113 28 N -0.103 5.103 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.218 0.782 39 H 0.254 0.746 40 H 0.151 0.849 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.647 -11.369 -10.852 20.814 hybrid contribution -1.274 1.237 0.544 1.857 sum 12.373 -10.132 -10.307 19.026 Atomic orbital electron populations 1.22377 0.93295 1.03358 1.02538 1.21844 0.95793 0.96423 0.83165 0.89747 1.22109 0.97103 1.01835 0.95193 1.21745 0.94792 0.99244 1.00106 1.20571 0.99478 1.00887 0.86457 1.24404 0.90616 0.91643 0.96748 1.69969 1.25735 1.27321 1.00610 1.23116 0.93123 0.94829 1.00715 1.20467 1.04785 1.09534 0.86895 1.17176 0.81648 0.83000 0.81908 1.90732 1.60098 1.38658 1.54363 1.42427 1.37132 1.36009 1.11925 1.17125 0.94510 0.89313 1.06861 1.20446 0.92943 0.99164 0.99158 1.20894 1.01284 0.93246 1.08333 1.18022 0.91508 0.92349 0.90819 1.19798 1.17879 1.09054 1.05680 0.90006 1.26838 0.97881 0.99647 0.94259 1.69916 1.39256 1.28455 1.08765 0.85175 0.78342 0.76908 0.78792 1.18269 1.19667 1.18174 1.20905 0.95187 0.99023 1.03948 1.20383 0.98622 0.92831 0.99489 1.45583 1.25380 1.32267 1.07039 0.94722 0.90730 0.89476 0.86901 0.90141 0.91506 0.86356 0.87015 0.87193 0.78167 0.74626 0.84930 0.86997 0.90469 0.88335 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 7.95 71.98 0.57 -3.91 16 2 C 0.13 3.04 3.33 45.09 0.15 3.19 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -1.66 5.04 30.74 0.15 -1.50 16 5 C -0.12 -1.18 5.96 30.77 0.18 -1.00 16 6 C -0.04 -0.46 6.33 30.11 0.19 -0.27 16 7 C 0.23 5.40 7.64 138.29 1.06 6.46 16 8 N -0.52 -14.06 11.20 -186.62 -2.09 -16.15 16 9 C 0.04 0.99 11.37 84.13 0.96 1.94 16 10 C -0.10 -3.10 6.46 40.14 0.26 -2.84 16 11 C 0.57 21.30 7.03 86.46 0.61 21.90 16 12 O -0.56 -24.57 10.26 -4.34 -0.04 -24.61 16 13 N -0.63 -22.18 5.27 -306.66 -1.62 -23.80 16 14 C 0.01 0.66 6.17 38.60 0.24 0.90 16 15 C -0.10 -4.11 9.90 22.14 0.22 -3.89 16 16 C -0.22 -10.44 9.74 22.48 0.22 -10.22 16 17 C 0.08 4.14 5.54 -21.27 -0.12 4.02 16 18 C -0.49 -26.84 9.04 23.39 0.21 -26.63 16 19 H 0.08 4.19 7.86 -2.91 -0.02 4.16 16 20 C 0.03 1.39 5.27 85.24 0.45 1.84 16 21 N -0.84 -45.97 10.84 21.82 0.24 -45.73 16 22 Si 0.99 39.09 29.57 68.60 2.03 41.12 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 26 C -0.17 -9.48 8.59 22.48 0.19 -9.29 16 27 C -0.09 -4.73 8.57 22.14 0.19 -4.54 16 28 N -0.42 -11.41 2.93 -478.91 -1.40 -12.81 16 29 H 0.03 1.10 7.42 -2.39 -0.02 1.08 16 30 H 0.07 2.74 5.38 -3.35 -0.02 2.72 16 31 H 0.09 1.90 7.78 -2.39 -0.02 1.88 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.20 4.06 7.54 -2.91 -0.02 4.04 16 39 H 0.42 11.12 7.84 -92.71 -0.73 10.39 16 40 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 42 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 43 H 0.10 5.83 6.26 -2.91 -0.02 5.81 16 44 H 0.09 4.53 6.79 -2.91 -0.02 4.51 16 Total: -1.00 -71.81 353.53 3.15 -68.66 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.30 Total: 37.18 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 5.73 Total: -23.85 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -4.87 Total: -98.49 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -71.81 3.15 -68.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593015345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.386 kcal (2) G-P(sol) polarization free energy of solvation -71.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds