Wall clock time and date at job start Tue Mar 31 2020 15:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47672 * 2 1 4 4 C 1.50704 * 109.46828 * 239.99986 * 2 1 3 5 5 C 1.38260 * 119.94465 * 107.42676 * 4 2 1 6 6 C 1.38145 * 120.05741 * 180.02562 * 5 4 2 7 7 C 1.38730 * 119.94404 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.05572 * 180.02562 * 7 6 5 9 9 C 1.42900 * 116.99840 * 180.02562 * 8 7 6 10 10 F 1.39896 * 109.47095 * 60.00105 * 9 8 7 11 11 F 1.39903 * 109.47187 * 299.99895 * 9 8 7 12 12 C 1.38732 * 119.88475 * 0.27793 * 7 6 5 13 13 C 1.38147 * 119.94546 * 359.46693 * 12 7 6 14 14 N 1.46898 * 109.47377 * 120.00358 * 2 1 3 15 15 C 1.46848 * 110.99857 * 298.90096 * 14 2 1 16 16 C 1.53036 * 109.52772 * 174.15901 * 15 14 2 17 17 C 1.53121 * 109.27609 * 59.17875 * 16 15 14 18 18 C 1.53117 * 109.16043 * 302.34853 * 17 16 15 19 19 H 1.08993 * 109.50788 * 297.67176 * 18 17 16 20 20 C 1.50707 * 109.50309 * 177.59446 * 18 17 16 21 21 H 1.07997 * 119.99902 * 240.00216 * 20 18 17 22 22 C 1.37878 * 119.99746 * 59.99820 * 20 18 17 23 23 N 1.31506 * 120.00389 * 0.02562 * 22 20 18 24 24 Si 1.86807 * 119.99625 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47331 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46824 * 120.00075 * 24 22 20 27 27 H 1.48504 * 109.46761 * 240.00251 * 24 22 20 28 28 C 1.46848 * 111.00143 * 174.69457 * 14 2 1 29 29 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46583 * 299.99832 * 1 2 3 31 31 H 1.08996 * 109.47217 * 59.99794 * 1 2 3 32 32 H 1.08005 * 119.97379 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.02882 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47129 * 180.02562 * 9 8 7 35 35 H 1.08005 * 120.02512 * 179.72406 * 12 7 6 36 36 H 1.08003 * 119.96936 * 180.23321 * 13 12 7 37 37 H 1.09000 * 109.46882 * 294.17699 * 15 14 2 38 38 H 1.09005 * 109.46165 * 54.15645 * 15 14 2 39 39 H 1.08999 * 109.50929 * 179.12307 * 16 15 14 40 40 H 1.09003 * 109.50402 * 299.24343 * 16 15 14 41 41 H 1.09002 * 109.51858 * 62.25414 * 17 16 15 42 42 H 1.09000 * 109.52250 * 182.37751 * 17 16 15 43 43 H 0.97004 * 120.00488 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.45965 * 305.85041 * 28 14 2 45 45 H 1.08993 * 109.46228 * 65.82575 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.6006 0.0139 -2.2620 6 6 3.0613 -0.6349 -3.3912 7 6 2.9538 -2.0145 -3.4896 8 8 3.4068 -2.6552 -4.5992 9 6 3.2629 -4.0765 -4.6318 10 9 1.9081 -4.4106 -4.5316 11 9 3.9629 -4.6408 -3.5599 12 6 2.3784 -2.7385 -2.4554 13 6 1.9240 -2.0855 -1.3260 14 7 2.0197 -0.6925 1.1994 15 6 1.5705 -0.0117 2.4204 16 6 1.9737 -0.8373 3.6443 17 6 3.4956 -1.0053 3.6617 18 6 3.9424 -1.6728 2.3581 19 1 3.5003 -2.6665 2.2879 20 6 5.4450 -1.7883 2.3414 21 1 6.0149 -1.3067 1.5606 22 6 6.0919 -2.5088 3.3229 23 7 5.3979 -3.0956 4.2734 24 14 7.9544 -2.6514 3.3025 25 1 8.4953 -1.9056 2.1378 26 1 8.5083 -2.0799 4.5562 27 1 8.3402 -4.0816 3.1975 28 6 3.4822 -0.8229 1.1716 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 2.6837 1.0880 -2.1852 33 1 3.5055 -0.0686 -4.1965 34 1 3.6639 -4.4609 -5.5697 35 1 2.2896 -3.8122 -2.5315 36 1 1.4794 -2.6491 -0.5191 37 1 2.0334 0.9734 2.4784 38 1 0.4862 0.0974 2.3974 39 1 1.6538 -0.3241 4.5511 40 1 1.5000 -1.8177 3.5940 41 1 3.9689 -0.0275 3.7511 42 1 3.7836 -1.6282 4.5085 43 1 5.8530 -3.6028 4.9637 44 1 3.7863 -1.3028 0.2414 45 1 3.9361 0.1659 1.2354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:23 Heat of formation + Delta-G solvation = -140.301402 kcal Electronic energy + Delta-G solvation = -28606.618453 eV Core-core repulsion = 24451.615189 eV Total energy + Delta-G solvation = -4155.003264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.30223 -48.31187 -41.24133 -40.05204 -38.38822 -35.99238 -34.17916 -32.04238 -31.80301 -31.39483 -29.73955 -27.20287 -26.67979 -25.13096 -24.11896 -23.65434 -22.72640 -21.24701 -20.32338 -19.98715 -19.09750 -18.86986 -18.45138 -17.16368 -17.09806 -16.63099 -16.43866 -15.81365 -15.59903 -15.47980 -15.10765 -14.95057 -14.91778 -14.64468 -14.61367 -14.39876 -14.23543 -14.15069 -14.03188 -13.70637 -13.48841 -13.25500 -13.03432 -12.88791 -12.68314 -12.54105 -12.45494 -12.32360 -11.92649 -11.85436 -11.70391 -11.58495 -11.35457 -10.81515 -10.63897 -10.37522 -9.96989 -9.24581 -9.09497 -8.08832 -6.22464 0.29547 0.39089 1.37166 1.38814 1.50152 1.64851 2.41116 2.58742 2.68090 3.12244 3.17978 3.51972 3.69952 3.74624 3.86764 3.87356 4.22478 4.22855 4.29497 4.35734 4.38597 4.44452 4.56765 4.63994 4.65822 4.74266 4.89213 4.91593 5.00335 5.01135 5.07851 5.11810 5.19317 5.22962 5.32412 5.38606 5.43810 5.53512 5.57163 5.62908 5.67658 5.98744 6.08942 6.15587 6.23448 6.42811 6.48268 6.90270 7.45141 8.95829 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.004433 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.346192 B = 6314.597223 C = 8188.441467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.120 3.880 3 H 0.051 0.949 4 C -0.102 4.102 5 C -0.084 4.084 6 C -0.139 4.139 7 C 0.088 3.912 8 O -0.326 6.326 9 C 0.403 3.597 10 F -0.210 7.210 11 F -0.216 7.216 12 C -0.205 4.205 13 C -0.064 4.064 14 N -0.538 5.538 15 C 0.064 3.936 16 C -0.110 4.110 17 C -0.104 4.104 18 C 0.056 3.944 19 H -0.007 1.007 20 C -0.534 4.534 21 H 0.045 0.955 22 C 0.016 3.984 23 N -0.914 5.914 24 Si 0.949 3.051 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.280 1.280 28 C 0.089 3.911 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.238 0.762 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.027 0.973 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.050 0.950 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 4.512 -17.349 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.068 0.932 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.157 4.157 7 C 0.045 3.955 8 O -0.244 6.244 9 C 0.314 3.686 10 F -0.192 7.192 11 F -0.198 7.198 12 C -0.223 4.223 13 C -0.082 4.082 14 N -0.263 5.263 15 C -0.063 4.063 16 C -0.148 4.148 17 C -0.142 4.142 18 C 0.037 3.963 19 H 0.011 0.989 20 C -0.572 4.572 21 H 0.063 0.937 22 C -0.183 4.183 23 N -0.554 5.554 24 Si 0.775 3.225 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.206 1.206 28 C -0.038 4.038 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.254 0.746 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.045 0.955 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -9.485 3.997 -17.323 20.151 hybrid contribution 1.508 -0.125 0.687 1.662 sum -7.977 3.872 -16.637 18.852 Atomic orbital electron populations 1.21834 0.91824 1.02599 1.02756 1.20600 0.96802 0.94488 0.86900 0.93153 1.19878 1.00494 0.93720 0.96172 1.21141 0.96152 1.00997 0.91924 1.20634 1.04120 0.90494 1.00457 1.19025 0.97184 0.93103 0.86207 1.86565 1.78102 1.20779 1.38982 1.24323 0.74743 0.77726 0.91806 1.93066 1.37035 1.92083 1.97038 1.93099 1.79184 1.85261 1.62212 1.21571 1.04722 1.00482 0.95570 1.20827 0.96983 0.94559 0.95847 1.62007 1.11077 1.51342 1.01895 1.22106 1.00678 0.94485 0.89062 1.21580 0.96255 0.99703 0.97224 1.21457 0.93825 0.97960 1.00948 1.18549 0.93364 0.93134 0.91270 0.98913 1.21523 0.93329 1.32001 1.10374 0.93651 1.25669 1.02308 0.95094 0.95189 1.70034 1.36456 1.34380 1.14518 0.85640 0.80963 0.77810 0.78074 1.19404 1.20273 1.20631 1.21870 0.86073 0.97005 0.98894 0.92560 0.91080 0.90650 0.82887 0.82707 0.74643 0.85653 0.86157 0.95517 0.88505 0.91137 0.93189 0.96011 0.92527 0.93082 0.93166 0.97312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.92 71.98 0.64 -2.32 16 2 C 0.12 3.38 2.28 44.17 0.10 3.48 16 3 H 0.05 1.35 7.93 -2.39 -0.02 1.33 16 4 C -0.10 -2.99 3.44 -19.85 -0.07 -3.06 16 5 C -0.08 -2.11 9.66 22.25 0.21 -1.89 16 6 C -0.14 -3.44 9.99 22.37 0.22 -3.22 16 7 C 0.09 2.45 6.48 22.51 0.15 2.60 16 8 O -0.33 -7.58 10.43 -92.42 -0.96 -8.54 16 9 C 0.40 7.29 5.98 113.37 0.68 7.97 16 10 F -0.21 -4.53 15.57 44.97 0.70 -3.83 16 11 F -0.22 -5.45 15.60 44.97 0.70 -4.75 16 12 C -0.20 -6.37 8.26 22.37 0.18 -6.19 16 13 C -0.06 -2.07 8.35 22.25 0.19 -1.88 16 14 N -0.54 -19.12 4.09 -875.51 -3.58 -22.70 16 15 C 0.06 2.08 5.24 86.33 0.45 2.54 16 16 C -0.11 -4.21 6.09 30.65 0.19 -4.03 16 17 C -0.10 -5.07 5.02 30.67 0.15 -4.91 16 18 C 0.06 2.93 2.26 -11.49 -0.03 2.90 16 19 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 20 C -0.53 -30.76 8.56 25.60 0.22 -30.54 16 21 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 22 C 0.02 0.92 5.30 84.66 0.45 1.37 16 23 N -0.91 -54.37 11.35 21.45 0.24 -54.13 16 24 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 C 0.09 3.91 4.34 86.33 0.37 4.29 16 29 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 30 H 0.07 1.41 6.30 -2.38 -0.02 1.39 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.15 2.97 7.98 -2.91 -0.02 2.95 16 33 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.24 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.13 3.89 5.10 -2.91 -0.01 3.87 16 36 H 0.12 4.19 7.94 -2.91 -0.02 4.16 16 37 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 2.54 6.04 -2.38 -0.01 2.53 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 43 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.05 2.30 6.18 -2.39 -0.01 2.29 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -69.04 358.99 4.23 -64.81 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.99 Total: 14.91 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.12 Total: -32.89 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -3.34 Total: -76.83 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.96 Total: -8.54 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 1.40 Total: -8.58 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.04 4.23 -64.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.493 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds