Wall clock time and date at job start Tue Mar 31 2020 15:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46971 * 2 1 4 4 C 1.50694 * 109.46875 * 119.99933 * 2 1 3 5 5 C 1.38266 * 119.94797 * 73.44737 * 4 2 1 6 6 C 1.38147 * 120.05884 * 179.72622 * 5 4 2 7 7 C 1.38729 * 119.94182 * 0.56337 * 6 5 4 8 8 O 1.35896 * 120.05451 * 179.68300 * 7 6 5 9 9 C 1.42892 * 117.00121 * 0.02713 * 8 7 6 10 10 F 1.39899 * 109.47225 * 299.99525 * 9 8 7 11 11 F 1.39898 * 109.47353 * 59.99804 * 9 8 7 12 12 C 1.38735 * 119.89044 * 359.71275 * 7 6 5 13 13 C 1.38144 * 119.94077 * 359.97438 * 12 7 6 14 14 N 1.46902 * 109.46672 * 239.99708 * 2 1 3 15 15 C 1.46841 * 110.99318 * 53.09230 * 14 2 1 16 16 C 1.53036 * 109.51663 * 185.84516 * 15 14 2 17 17 C 1.53127 * 109.27726 * 300.81650 * 16 15 14 18 18 C 1.53121 * 109.15849 * 57.65368 * 17 16 15 19 19 H 1.08994 * 109.50422 * 62.28290 * 18 17 16 20 20 C 1.50699 * 109.53263 * 182.38607 * 18 17 16 21 21 H 1.07997 * 120.00173 * 119.82096 * 20 18 17 22 22 C 1.37874 * 119.99977 * 299.82133 * 20 18 17 23 23 N 1.31524 * 120.00134 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00526 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46828 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47611 * 119.99419 * 24 22 20 27 27 H 1.48497 * 109.47601 * 240.00355 * 24 22 20 28 28 C 1.46850 * 110.99260 * 177.29333 * 14 2 1 29 29 H 1.09001 * 109.46877 * 59.99761 * 1 2 3 30 30 H 1.08992 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47016 * 300.00683 * 1 2 3 32 32 H 1.08005 * 119.96620 * 359.97438 * 5 4 2 33 33 H 1.08002 * 120.02978 * 180.25001 * 6 5 4 34 34 H 1.09000 * 109.47300 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.03068 * 179.97438 * 12 7 6 36 36 H 1.08010 * 119.96992 * 180.02562 * 13 12 7 37 37 H 1.09002 * 109.47049 * 65.82992 * 15 14 2 38 38 H 1.09001 * 109.46548 * 305.85658 * 15 14 2 39 39 H 1.09003 * 109.50453 * 180.87246 * 16 15 14 40 40 H 1.09004 * 109.50024 * 60.75345 * 16 15 14 41 41 H 1.09000 * 109.52333 * 297.74718 * 17 16 15 42 42 H 1.09002 * 109.51627 * 177.55817 * 17 16 15 43 43 H 0.96999 * 120.00319 * 180.02562 * 23 22 20 44 44 H 1.08994 * 109.46180 * 54.14926 * 28 14 2 45 45 H 1.08994 * 109.46196 * 294.16219 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.9405 -2.0872 1.3184 6 6 2.4054 -2.7413 2.4429 7 6 2.9540 -2.0144 3.4895 8 8 3.4061 -2.6550 4.5995 9 6 3.2859 -4.0787 4.6211 10 9 1.9380 -4.4347 4.5046 11 9 4.0062 -4.6238 3.5529 12 6 3.0398 -0.6326 3.4013 13 6 2.5794 0.0162 2.2719 14 7 2.0196 -0.6926 -1.1994 15 6 1.4187 -0.1285 -2.4147 16 6 1.8363 -0.9642 -3.6269 17 6 3.3633 -0.9611 -3.7412 18 6 3.9654 -1.5079 -2.4439 19 1 3.6454 -2.5399 -2.3009 20 6 5.4693 -1.4540 -2.5246 21 1 6.0280 -0.8708 -1.8076 22 6 6.1320 -2.1493 -3.5138 23 7 5.4516 -2.8592 -4.3873 24 14 7.9961 -2.0832 -3.6135 25 1 8.5198 -1.2212 -2.5234 26 1 8.5485 -3.4540 -3.4697 27 1 8.4021 -1.5210 -4.9266 28 6 3.4861 -0.6563 -1.2661 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.5087 -2.6521 0.5054 33 1 2.3372 -3.8171 2.5093 34 1 3.6835 -4.4627 5.5606 35 1 3.4660 -0.0645 4.2149 36 1 2.6463 1.0920 2.2026 37 1 1.7606 0.8981 -2.5463 38 1 0.3327 -0.1404 -2.3222 39 1 1.4027 -0.5362 -4.5308 40 1 1.4827 -1.9878 -3.5023 41 1 3.7142 0.0578 -3.9046 42 1 3.6671 -1.5906 -4.5776 43 1 5.9178 -3.3486 -5.0830 44 1 3.9017 -1.0517 -0.3393 45 1 3.8181 0.3727 -1.4032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:31 Heat of formation + Delta-G solvation = -139.717223 kcal Electronic energy + Delta-G solvation = -28528.235759 eV Core-core repulsion = 24373.257827 eV Total energy + Delta-G solvation = -4154.977932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.30013 -48.30946 -41.20918 -40.05890 -38.39895 -36.00539 -34.16474 -32.01307 -31.83550 -31.40858 -29.70601 -27.21207 -26.67499 -25.15971 -24.13446 -23.61675 -22.72738 -21.23008 -20.31950 -19.98165 -19.09063 -18.86799 -18.44794 -17.15501 -17.10508 -16.61230 -16.46507 -15.82425 -15.60440 -15.50331 -15.10700 -14.94029 -14.90904 -14.64234 -14.60002 -14.39823 -14.23848 -14.12984 -14.05586 -13.69907 -13.45509 -13.22688 -13.04450 -12.88526 -12.67656 -12.56515 -12.45804 -12.32225 -11.93038 -11.84440 -11.68775 -11.57267 -11.35288 -10.81784 -10.64039 -10.37258 -9.96556 -9.24376 -9.09794 -8.08759 -6.22449 0.30321 0.40187 1.37562 1.39222 1.50516 1.65298 2.41350 2.58989 2.68859 3.12186 3.18136 3.52338 3.70231 3.77200 3.87613 3.88047 4.22022 4.22567 4.28569 4.36735 4.38654 4.45290 4.54926 4.64362 4.66269 4.74069 4.88264 4.90962 5.00119 5.00970 5.08286 5.11747 5.20027 5.23126 5.33478 5.37019 5.43520 5.53548 5.57894 5.63141 5.68657 5.98912 6.09757 6.15760 6.23397 6.42762 6.48192 6.90393 7.45217 8.95987 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004219 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.119289 B = 6635.519437 C = 8357.848952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.120 3.880 3 H 0.049 0.951 4 C -0.101 4.101 5 C -0.063 4.063 6 C -0.205 4.205 7 C 0.087 3.913 8 O -0.327 6.327 9 C 0.403 3.597 10 F -0.210 7.210 11 F -0.216 7.216 12 C -0.139 4.139 13 C -0.084 4.084 14 N -0.538 5.538 15 C 0.062 3.938 16 C -0.110 4.110 17 C -0.103 4.103 18 C 0.056 3.944 19 H -0.008 1.008 20 C -0.534 4.534 21 H 0.046 0.954 22 C 0.016 3.984 23 N -0.915 5.915 24 Si 0.950 3.050 25 H -0.269 1.269 26 H -0.281 1.281 27 H -0.277 1.277 28 C 0.090 3.910 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.238 0.762 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.027 0.973 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 3.628 17.678 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 H 0.067 0.933 4 C -0.102 4.102 5 C -0.081 4.081 6 C -0.224 4.224 7 C 0.044 3.956 8 O -0.244 6.244 9 C 0.314 3.686 10 F -0.192 7.192 11 F -0.198 7.198 12 C -0.157 4.157 13 C -0.103 4.103 14 N -0.263 5.263 15 C -0.065 4.065 16 C -0.148 4.148 17 C -0.142 4.142 18 C 0.037 3.963 19 H 0.011 0.989 20 C -0.573 4.573 21 H 0.064 0.936 22 C -0.183 4.183 23 N -0.554 5.554 24 Si 0.776 3.224 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.203 1.203 28 C -0.037 4.037 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.045 0.955 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -9.820 3.089 17.690 20.468 hybrid contribution 1.458 0.033 -0.801 1.664 sum -8.361 3.122 16.889 19.102 Atomic orbital electron populations 1.21890 0.91797 1.02725 1.02897 1.20578 0.96709 0.94401 0.87124 0.93273 1.19885 1.00529 0.93726 0.96015 1.20829 0.96820 0.94560 0.95919 1.21574 1.04858 1.00434 0.95497 1.19025 0.97339 0.93080 0.86132 1.86562 1.78615 1.20571 1.38692 1.24317 0.74663 0.77735 0.91871 1.93067 1.37613 1.91575 1.96976 1.93095 1.78220 1.85965 1.62470 1.20628 1.04153 0.90469 1.00478 1.21141 0.96251 1.00977 0.91883 1.61985 1.06740 1.55426 1.02164 1.22142 0.99923 0.95341 0.89067 1.21587 0.96160 0.99747 0.97300 1.21456 0.93747 0.98141 1.00827 1.18549 0.93220 0.93313 0.91239 0.98949 1.21529 0.93178 1.29408 1.13141 0.93559 1.25679 1.02392 0.94867 0.95361 1.70043 1.36455 1.31737 1.17196 0.85625 0.80892 0.77835 0.78040 1.19355 1.20664 1.20304 1.21848 0.86350 0.96904 0.98642 0.90920 0.92371 0.90618 0.86083 0.85642 0.74663 0.82750 0.82955 0.95480 0.88326 0.91136 0.93239 0.95946 0.92571 0.93093 0.93479 0.97099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.66 71.98 0.62 -2.36 16 2 C 0.12 3.37 2.28 44.17 0.10 3.47 16 3 H 0.05 1.33 7.94 -2.39 -0.02 1.31 16 4 C -0.10 -2.94 3.55 -19.85 -0.07 -3.01 16 5 C -0.06 -2.02 8.95 22.25 0.20 -1.82 16 6 C -0.21 -6.32 8.26 22.37 0.18 -6.13 16 7 C 0.09 2.42 6.48 22.51 0.15 2.56 16 8 O -0.33 -7.50 10.43 -92.38 -0.96 -8.46 16 9 C 0.40 7.17 5.98 113.37 0.68 7.85 16 10 F -0.21 -4.48 15.58 44.97 0.70 -3.77 16 11 F -0.22 -5.36 15.58 44.97 0.70 -4.66 16 12 C -0.14 -3.43 9.99 22.37 0.22 -3.20 16 13 C -0.08 -2.11 9.66 22.25 0.21 -1.90 16 14 N -0.54 -19.09 4.02 -875.53 -3.52 -22.62 16 15 C 0.06 2.03 5.07 86.33 0.44 2.47 16 16 C -0.11 -4.22 6.09 30.65 0.19 -4.03 16 17 C -0.10 -5.05 5.03 30.68 0.15 -4.90 16 18 C 0.06 2.92 2.26 -11.49 -0.03 2.90 16 19 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 20 C -0.53 -30.71 8.56 25.60 0.22 -30.49 16 21 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 22 C 0.02 0.90 5.31 84.65 0.45 1.35 16 23 N -0.91 -54.39 11.36 21.45 0.24 -54.15 16 24 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 28 C 0.09 3.95 4.49 86.33 0.39 4.34 16 29 H 0.07 1.42 6.19 -2.39 -0.01 1.41 16 30 H 0.06 1.37 8.06 -2.39 -0.02 1.35 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.12 4.16 7.92 -2.91 -0.02 4.13 16 33 H 0.13 3.84 5.10 -2.91 -0.01 3.83 16 34 H 0.24 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.15 2.97 7.99 -2.91 -0.02 2.94 16 37 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 2.58 5.85 -2.39 -0.01 2.57 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 3.11 6.16 -2.39 -0.01 3.09 16 43 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.05 2.16 6.82 -2.39 -0.02 2.14 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -68.98 359.73 4.28 -64.70 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.99 Total: 14.83 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 4.11 Total: -32.91 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -3.28 Total: -76.76 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.96 Total: -8.46 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 1.40 Total: -8.43 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.98 4.28 -64.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.021 kcal (2) G-P(sol) polarization free energy of solvation -68.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds