Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.43145 * 2 1 4 4 C 1.53379 * 109.39066 * 119.87313 * 2 1 3 5 5 C 1.50880 * 108.19586 * 170.57314 * 4 2 1 6 6 C 1.34567 * 128.32915 * 163.36026 * 5 4 2 7 7 N 1.35198 * 107.61946 * 180.53202 * 6 5 4 8 8 H 0.97008 * 126.00047 * 179.70343 * 7 6 5 9 9 N 1.40313 * 107.99240 * 359.54467 * 7 6 5 10 10 C 1.30127 * 108.12167 * 0.38318 * 9 7 6 11 11 C 1.50949 * 128.28310 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.71853 * 282.93236 * 11 10 9 13 13 C 1.50696 * 109.71656 * 43.57985 * 11 10 9 14 14 O 1.21292 * 120.00231 * 119.99863 * 13 11 10 15 15 N 1.34779 * 120.00055 * 299.99702 * 13 11 10 16 16 C 1.39940 * 120.00368 * 174.88541 * 15 13 11 17 17 C 1.39290 * 119.94634 * 325.56566 * 16 15 13 18 18 C 1.38482 * 120.42914 * 179.75928 * 17 16 15 19 19 C 1.37678 * 120.32140 * 0.51518 * 18 17 16 20 20 C 1.40742 * 119.88795 * 359.74247 * 19 18 17 21 21 C 1.41406 * 120.21557 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99887 * 25.15744 * 21 20 19 23 23 C 1.39931 * 119.99934 * 205.16432 * 21 20 19 24 24 N 1.30830 * 120.00333 * 16.77907 * 23 21 20 25 25 Si 1.86802 * 119.99732 * 196.78415 * 23 21 20 26 26 H 1.48491 * 109.47281 * 89.99577 * 25 23 21 27 27 H 1.48501 * 109.46917 * 209.99719 * 25 23 21 28 28 H 1.48502 * 109.47118 * 329.99375 * 25 23 21 29 29 C 1.38232 * 119.94606 * 145.83511 * 16 15 13 30 30 C 1.53027 * 109.42801 * 240.10118 * 2 1 3 31 31 H 1.09000 * 109.47061 * 179.89989 * 1 2 3 32 32 H 1.09004 * 109.46942 * 299.90329 * 1 2 3 33 33 H 1.08995 * 109.47020 * 59.89916 * 1 2 3 34 34 H 1.09004 * 109.71682 * 50.89834 * 4 2 1 35 35 H 1.08997 * 109.72480 * 290.24944 * 4 2 1 36 36 H 1.08002 * 126.19181 * 0.26773 * 6 5 4 37 37 H 0.96999 * 119.99806 * 354.88541 * 15 13 11 38 38 H 1.08004 * 119.78232 * 0.02562 * 17 16 15 39 39 H 1.08004 * 119.83853 * 180.22923 * 18 17 16 40 40 H 1.08008 * 120.06027 * 179.76430 * 19 18 17 41 41 H 0.96997 * 119.99578 * 180.02562 * 24 23 21 42 42 H 1.07998 * 120.16866 * 359.96103 * 29 16 15 43 43 H 1.09002 * 109.42571 * 48.14345 * 30 2 1 44 44 H 1.09007 * 109.37826 * 288.28169 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0393 -0.7206 1.2546 5 6 3.5295 -0.9117 1.1159 6 6 4.4256 -1.2088 2.0749 7 7 5.6437 -1.2706 1.4917 8 1 6.4818 -1.4631 1.9408 9 7 5.4823 -1.0111 0.1223 10 6 4.2191 -0.7944 -0.1025 11 6 3.5441 -0.4732 -1.4139 12 1 3.7202 0.5710 -1.6720 13 6 4.0906 -1.3650 -2.4988 14 8 3.3480 -2.1093 -3.1035 15 7 5.4046 -1.3355 -2.7972 16 6 5.9312 -2.2378 -3.7283 17 6 5.4125 -3.5274 -3.8170 18 6 5.9227 -4.4268 -4.7381 19 6 6.9563 -4.0589 -5.5698 20 6 7.4943 -2.7609 -5.4880 21 6 8.5563 -2.3759 -6.3384 22 1 8.6953 -2.8722 -7.2875 23 6 9.4274 -1.3518 -5.9503 24 7 9.4784 -0.9759 -4.6982 25 14 10.5172 -0.5214 -7.2200 26 1 9.8026 0.6441 -7.7994 27 1 11.7709 -0.0607 -6.5708 28 1 10.8448 -1.4876 -8.2991 29 6 6.9691 -1.8495 -4.5547 30 6 2.0390 -0.7194 -1.2511 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3633 0.5124 0.8909 33 1 -0.3633 0.5154 -0.8890 34 1 1.5509 -1.6909 1.3450 35 1 1.8264 -0.1175 2.1371 36 1 4.2111 -1.3649 3.1218 37 1 5.9854 -0.6888 -2.3666 38 1 4.6042 -3.8265 -3.1660 39 1 5.5108 -5.4232 -4.8012 40 1 7.3536 -4.7650 -6.2840 41 1 10.0820 -0.2658 -4.4293 42 1 7.3745 -0.8510 -4.4842 43 1 1.5127 -0.3398 -2.1269 44 1 1.8551 -1.7893 -1.1531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598941159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = 42.074981 kcal Electronic energy + Delta-G solvation = -27115.718342 eV Core-core repulsion = 23419.312698 eV Total energy + Delta-G solvation = -3696.405644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.66366 -39.54747 -37.51779 -36.69471 -34.15349 -33.33390 -32.65017 -31.03124 -29.88253 -29.44946 -28.25646 -26.25477 -25.19058 -24.51901 -22.02257 -21.18908 -20.91501 -20.54071 -19.53040 -18.81324 -17.74754 -17.28749 -16.67137 -15.80120 -15.58804 -14.92816 -14.71532 -14.59298 -14.50701 -14.16211 -13.93630 -13.46181 -13.28714 -13.03673 -12.71436 -12.58585 -12.51200 -12.24051 -12.11791 -11.64141 -11.53138 -11.31490 -11.14051 -11.09802 -10.80668 -10.70143 -10.65668 -10.58886 -10.41731 -9.99718 -9.65820 -9.60946 -9.26413 -9.09195 -8.80860 -8.49603 -7.30764 -6.91869 -6.61341 -4.30848 1.83096 2.49110 2.70847 2.79316 2.92065 3.10245 3.13939 3.26928 3.46813 3.79824 3.97747 4.32707 4.53068 4.71246 4.74612 4.78458 4.97507 5.07391 5.29626 5.33588 5.41153 5.50603 5.56742 5.61329 5.73618 5.76544 5.81099 5.90205 5.99961 6.11559 6.17233 6.34357 6.38806 6.51794 6.71919 6.79151 7.00872 7.12536 7.15979 7.21820 7.33089 7.59605 7.70465 7.79415 8.00672 8.10288 8.24604 8.42904 8.65091 8.86184 8.95599 9.04235 10.25319 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.003193 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.122403 B = 8767.105446 C = 9281.830245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.035 4.035 5 C -0.230 4.230 6 C 0.058 3.942 7 N -0.479 5.479 8 H 0.440 0.560 9 N -0.268 5.268 10 C 0.085 3.915 11 C -0.026 4.026 12 H 0.112 0.888 13 C 0.515 3.485 14 O -0.525 6.525 15 N -0.652 5.652 16 C 0.150 3.850 17 C -0.225 4.225 18 C -0.087 4.087 19 C -0.230 4.230 20 C 0.120 3.880 21 C -0.464 4.464 22 H 0.078 0.922 23 C 0.076 3.924 24 N -0.798 5.798 25 Si 0.907 3.093 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.263 1.263 29 C -0.181 4.181 30 C -0.091 4.091 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.175 0.825 37 H 0.406 0.594 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.278 0.722 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 5.471 15.365 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.073 4.073 5 C -0.242 4.242 6 C -0.088 4.088 7 N -0.188 5.188 8 H 0.284 0.716 9 N -0.090 5.090 10 C -0.085 4.085 11 C -0.050 4.050 12 H 0.130 0.870 13 C 0.301 3.699 14 O -0.401 6.401 15 N -0.295 5.295 16 C 0.058 3.942 17 C -0.246 4.246 18 C -0.106 4.106 19 C -0.250 4.250 20 C 0.117 3.883 21 C -0.494 4.494 22 H 0.096 0.904 23 C -0.140 4.140 24 N -0.424 5.424 25 Si 0.732 3.268 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.187 1.187 29 C -0.202 4.202 30 C -0.129 4.129 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.192 0.808 37 H 0.241 0.759 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.436 5.029 14.628 18.660 hybrid contribution 0.758 0.646 0.513 1.121 sum -9.678 5.676 15.141 18.845 Atomic orbital electron populations 1.21815 0.94711 1.02081 1.01696 1.21181 0.95620 0.99718 0.94362 0.90903 1.20059 0.89230 1.00351 0.97667 1.20047 0.97287 1.14747 0.92117 1.22022 0.85478 1.02062 0.99264 1.46342 1.08594 1.57757 1.06101 0.71565 1.77133 1.17869 1.21398 0.92618 1.21861 0.90983 1.00210 0.95400 1.19950 0.96065 1.00777 0.88166 0.87011 1.20171 0.82498 0.83664 0.83604 1.90698 1.57603 1.40159 1.51614 1.43444 1.08383 1.35918 1.41778 1.17607 0.96165 0.88708 0.91712 1.20280 1.05654 0.93189 1.05490 1.20400 0.96683 0.97157 0.96345 1.21019 1.02571 0.96672 1.04702 1.17359 0.90648 0.89659 0.90592 1.19526 1.09781 1.15828 1.04303 0.90425 1.25870 0.97031 0.95727 0.95412 1.69830 1.32299 1.24177 1.16140 0.86335 0.79023 0.80086 0.81366 1.19381 1.20455 1.18686 1.21068 0.98775 1.00650 0.99735 1.21465 0.91100 1.02442 0.97890 0.92444 0.92687 0.92416 0.91148 0.91286 0.80765 0.75887 0.88305 0.89176 0.88950 0.91120 0.86035 0.90277 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.15 37.16 0.34 -0.76 16 2 C -0.09 -0.83 2.66 -90.41 -0.24 -1.07 16 3 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 4 C -0.03 -0.31 5.57 -27.60 -0.15 -0.46 16 5 C -0.23 -2.63 5.89 -104.98 -0.62 -3.25 16 6 C 0.06 0.55 11.95 -17.37 -0.21 0.34 16 7 N -0.48 -5.39 7.37 30.35 0.22 -5.17 16 8 H 0.44 3.63 8.96 -182.43 -1.64 1.99 16 9 N -0.27 -4.10 11.60 33.75 0.39 -3.71 16 10 C 0.08 1.21 6.39 -82.34 -0.53 0.68 16 11 C -0.03 -0.37 2.90 -92.61 -0.27 -0.64 16 12 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.52 9.93 6.87 -10.99 -0.08 9.85 16 14 O -0.52 -11.72 13.60 5.55 0.08 -11.64 16 15 N -0.65 -13.61 4.92 -9.91 -0.05 -13.66 16 16 C 0.15 3.73 6.25 -83.77 -0.52 3.21 16 17 C -0.23 -5.67 8.66 -39.10 -0.34 -6.01 16 18 C -0.09 -2.14 10.01 -39.70 -0.40 -2.53 16 19 C -0.23 -5.94 9.79 -38.84 -0.38 -6.32 16 20 C 0.12 3.32 5.57 -106.85 -0.60 2.72 16 21 C -0.46 -12.58 9.06 -37.74 -0.34 -12.92 16 22 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 23 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 24 N -0.80 -20.72 10.94 55.55 0.61 -20.11 16 25 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 29 C -0.18 -4.82 8.60 -38.68 -0.33 -5.15 16 30 C -0.09 -1.11 3.92 -26.52 -0.10 -1.21 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.41 7.83 8.14 -40.82 -0.33 7.50 16 38 H 0.10 2.48 6.47 -52.48 -0.34 2.14 16 39 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 40 H 0.09 2.23 8.06 -52.48 -0.42 1.81 16 41 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 42 H 0.12 3.29 6.17 -52.49 -0.32 2.96 16 43 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.08 1.10 7.77 -51.93 -0.40 0.69 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -32.78 360.66 -10.43 -43.21 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.23 Total: 13.38 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -4.85 Total: -21.68 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 1.17 Total: -42.64 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.78 -10.43 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.280 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds