Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.43145 * 2 1 4 4 C 1.53379 * 109.39066 * 119.87313 * 2 1 3 5 5 C 1.50880 * 108.19586 * 170.57314 * 4 2 1 6 6 C 1.34567 * 128.32915 * 163.36026 * 5 4 2 7 7 N 1.35198 * 107.61946 * 180.53202 * 6 5 4 8 8 H 0.97008 * 126.00047 * 179.70343 * 7 6 5 9 9 N 1.40313 * 107.99240 * 359.54467 * 7 6 5 10 10 C 1.30127 * 108.12167 * 0.38318 * 9 7 6 11 11 C 1.50949 * 128.28310 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.71853 * 282.93236 * 11 10 9 13 13 C 1.50696 * 109.71656 * 43.57985 * 11 10 9 14 14 O 1.21292 * 120.00231 * 119.99863 * 13 11 10 15 15 N 1.34779 * 120.00055 * 299.99702 * 13 11 10 16 16 C 1.39940 * 120.00368 * 174.88541 * 15 13 11 17 17 C 1.39290 * 119.94634 * 325.56566 * 16 15 13 18 18 C 1.38482 * 120.42914 * 179.75928 * 17 16 15 19 19 C 1.37678 * 120.32140 * 0.51518 * 18 17 16 20 20 C 1.40742 * 119.88795 * 359.74247 * 19 18 17 21 21 C 1.41406 * 120.21557 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99887 * 25.15744 * 21 20 19 23 23 C 1.39931 * 119.99934 * 205.16432 * 21 20 19 24 24 N 1.30830 * 120.00333 * 16.77907 * 23 21 20 25 25 Si 1.86802 * 119.99732 * 196.78415 * 23 21 20 26 26 H 1.48491 * 109.47281 * 89.99577 * 25 23 21 27 27 H 1.48501 * 109.46917 * 209.99719 * 25 23 21 28 28 H 1.48502 * 109.47118 * 329.99375 * 25 23 21 29 29 C 1.38232 * 119.94606 * 145.83511 * 16 15 13 30 30 C 1.53027 * 109.42801 * 240.10118 * 2 1 3 31 31 H 1.09000 * 109.47061 * 179.89989 * 1 2 3 32 32 H 1.09004 * 109.46942 * 299.90329 * 1 2 3 33 33 H 1.08995 * 109.47020 * 59.89916 * 1 2 3 34 34 H 1.09004 * 109.71682 * 50.89834 * 4 2 1 35 35 H 1.08997 * 109.72480 * 290.24944 * 4 2 1 36 36 H 1.08002 * 126.19181 * 0.26773 * 6 5 4 37 37 H 0.96999 * 119.99806 * 354.88541 * 15 13 11 38 38 H 1.08004 * 119.78232 * 0.02562 * 17 16 15 39 39 H 1.08004 * 119.83853 * 180.22923 * 18 17 16 40 40 H 1.08008 * 120.06027 * 179.76430 * 19 18 17 41 41 H 0.96997 * 119.99578 * 180.02562 * 24 23 21 42 42 H 1.07998 * 120.16866 * 359.96103 * 29 16 15 43 43 H 1.09002 * 109.42571 * 48.14345 * 30 2 1 44 44 H 1.09007 * 109.37826 * 288.28169 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0393 -0.7206 1.2546 5 6 3.5295 -0.9117 1.1159 6 6 4.4256 -1.2088 2.0749 7 7 5.6437 -1.2706 1.4917 8 1 6.4818 -1.4631 1.9408 9 7 5.4823 -1.0111 0.1223 10 6 4.2191 -0.7944 -0.1025 11 6 3.5441 -0.4732 -1.4139 12 1 3.7202 0.5710 -1.6720 13 6 4.0906 -1.3650 -2.4988 14 8 3.3480 -2.1093 -3.1035 15 7 5.4046 -1.3355 -2.7972 16 6 5.9312 -2.2378 -3.7283 17 6 5.4125 -3.5274 -3.8170 18 6 5.9227 -4.4268 -4.7381 19 6 6.9563 -4.0589 -5.5698 20 6 7.4943 -2.7609 -5.4880 21 6 8.5563 -2.3759 -6.3384 22 1 8.6953 -2.8722 -7.2875 23 6 9.4274 -1.3518 -5.9503 24 7 9.4784 -0.9759 -4.6982 25 14 10.5172 -0.5214 -7.2200 26 1 9.8026 0.6441 -7.7994 27 1 11.7709 -0.0607 -6.5708 28 1 10.8448 -1.4876 -8.2991 29 6 6.9691 -1.8495 -4.5547 30 6 2.0390 -0.7194 -1.2511 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3633 0.5124 0.8909 33 1 -0.3633 0.5154 -0.8890 34 1 1.5509 -1.6909 1.3450 35 1 1.8264 -0.1175 2.1371 36 1 4.2111 -1.3649 3.1218 37 1 5.9854 -0.6888 -2.3666 38 1 4.6042 -3.8265 -3.1660 39 1 5.5108 -5.4232 -4.8012 40 1 7.3536 -4.7650 -6.2840 41 1 10.0820 -0.2658 -4.4293 42 1 7.3745 -0.8510 -4.4842 43 1 1.5127 -0.3398 -2.1269 44 1 1.8551 -1.7893 -1.1531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598941159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = 22.446133 kcal Electronic energy + Delta-G solvation = -27116.569513 eV Core-core repulsion = 23419.312698 eV Total energy + Delta-G solvation = -3697.256815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61498 -41.12934 -39.16515 -37.84464 -35.98644 -35.14191 -33.77286 -31.85452 -31.49075 -30.87201 -30.03677 -27.20215 -26.94957 -25.66720 -23.32989 -23.09042 -22.15122 -21.59384 -21.06605 -19.85395 -19.24044 -18.61295 -18.14038 -17.51166 -16.87001 -16.62908 -16.47408 -15.78954 -15.64241 -15.32082 -15.01227 -14.87182 -14.69733 -14.37063 -14.19874 -13.96442 -13.73996 -13.47054 -13.19155 -13.07696 -12.95910 -12.84650 -12.60399 -12.47511 -12.33440 -12.08922 -11.86836 -11.62230 -11.57676 -11.48283 -11.39573 -11.15426 -10.95921 -10.70438 -10.33999 -9.35850 -9.33172 -8.86172 -8.55047 -6.37183 0.76457 0.96934 1.02237 1.38722 1.47726 1.51867 1.61466 1.78129 2.02639 2.21390 2.29496 2.74540 3.38147 3.56206 3.69777 3.77538 3.95355 4.09863 4.29227 4.31759 4.39828 4.47011 4.60422 4.68525 4.73260 4.83233 4.84861 4.91781 4.99345 5.05453 5.08945 5.12593 5.16526 5.21017 5.28709 5.31622 5.34491 5.46591 5.61619 5.66255 5.77903 5.84940 6.00100 6.06883 6.30967 6.48545 6.54735 6.67523 6.73988 6.92260 6.96335 7.24376 8.33604 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.003193 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.122403 B = 8767.105446 C = 9281.830245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.031 4.031 5 C -0.247 4.247 6 C 0.076 3.924 7 N -0.476 5.476 8 H 0.451 0.549 9 N -0.321 5.321 10 C 0.065 3.935 11 C -0.018 4.018 12 H 0.130 0.870 13 C 0.513 3.487 14 O -0.559 6.559 15 N -0.652 5.652 16 C 0.154 3.846 17 C -0.241 4.241 18 C -0.083 4.083 19 C -0.249 4.249 20 C 0.094 3.906 21 C -0.497 4.497 22 H 0.078 0.922 23 C 0.036 3.964 24 N -0.822 5.822 25 Si 0.984 3.016 26 H -0.263 1.263 27 H -0.267 1.267 28 H -0.259 1.259 29 C -0.203 4.203 30 C -0.086 4.086 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.223 0.777 37 H 0.412 0.588 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.288 0.712 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 6.634 17.196 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.069 4.069 5 C -0.259 4.259 6 C -0.070 4.070 7 N -0.186 5.186 8 H 0.297 0.703 9 N -0.144 5.144 10 C -0.103 4.103 11 C -0.041 4.041 12 H 0.148 0.852 13 C 0.301 3.699 14 O -0.437 6.437 15 N -0.295 5.295 16 C 0.060 3.940 17 C -0.262 4.262 18 C -0.102 4.102 19 C -0.269 4.269 20 C 0.091 3.909 21 C -0.527 4.527 22 H 0.096 0.904 23 C -0.179 4.179 24 N -0.448 5.448 25 Si 0.805 3.195 26 H -0.188 1.188 27 H -0.191 1.191 28 H -0.182 1.182 29 C -0.225 4.225 30 C -0.124 4.124 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.248 0.752 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.950 6.198 16.489 20.741 hybrid contribution 0.917 0.247 0.037 0.950 sum -10.033 6.445 16.526 20.379 Atomic orbital electron populations 1.21790 0.93274 1.02210 1.02683 1.21154 0.96674 0.99570 0.92805 0.90147 1.20121 0.87451 1.00904 0.98395 1.20422 0.98825 1.15359 0.91254 1.22766 0.84013 0.99275 1.00932 1.46402 1.09985 1.57126 1.05040 0.70308 1.77034 1.18840 1.23456 0.95102 1.21919 0.91326 1.01016 0.96005 1.19968 0.97137 1.00266 0.86720 0.85212 1.21110 0.81429 0.83542 0.83833 1.90665 1.58176 1.41815 1.53012 1.43486 1.09326 1.35514 1.41155 1.17722 0.95339 0.89326 0.91581 1.20407 1.06020 0.93646 1.06149 1.20711 0.95878 0.98333 0.95278 1.21205 1.03406 0.96590 1.05692 1.17770 0.91342 0.90587 0.91195 1.19798 1.10704 1.17586 1.04581 0.90407 1.26758 0.98122 0.95543 0.97459 1.69879 1.32779 1.24315 1.17835 0.85174 0.77167 0.78772 0.78392 1.18786 1.19127 1.18249 1.21002 1.00087 1.00286 1.01117 1.21474 0.89608 1.01537 0.99807 0.92761 0.90702 0.92460 0.91024 0.88461 0.76061 0.75159 0.88558 0.86256 0.87836 0.90147 0.87118 0.90466 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.15 71.98 0.66 -1.15 16 2 C -0.08 -1.36 2.66 -10.66 -0.03 -1.38 16 3 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 4 C -0.03 -0.46 5.57 30.03 0.17 -0.29 16 5 C -0.25 -5.11 5.89 -20.10 -0.12 -5.22 16 6 C 0.08 1.22 11.95 83.33 1.00 2.22 16 7 N -0.48 -10.00 7.37 -57.89 -0.43 -10.43 16 8 H 0.45 6.83 8.96 -213.17 -1.91 4.92 16 9 N -0.32 -9.79 11.60 -47.13 -0.55 -10.34 16 10 C 0.07 1.82 6.39 43.44 0.28 2.10 16 11 C -0.02 -0.51 2.90 -12.08 -0.04 -0.55 16 12 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 13 C 0.51 20.42 6.87 87.66 0.60 21.03 16 14 O -0.56 -25.87 13.60 -3.07 -0.04 -25.91 16 15 N -0.65 -28.29 4.92 -303.65 -1.49 -29.79 16 16 C 0.15 7.95 6.25 38.10 0.24 8.19 16 17 C -0.24 -12.51 8.66 22.58 0.20 -12.32 16 18 C -0.08 -4.16 10.01 22.20 0.22 -3.94 16 19 C -0.25 -13.21 9.79 22.75 0.22 -12.99 16 20 C 0.09 5.36 5.57 -21.30 -0.12 5.24 16 21 C -0.50 -27.63 9.06 23.46 0.21 -27.42 16 22 H 0.08 4.17 7.90 -2.91 -0.02 4.14 16 23 C 0.04 1.85 5.16 85.25 0.44 2.29 16 24 N -0.82 -43.34 10.94 21.82 0.24 -43.10 16 25 Si 0.98 38.78 29.59 68.60 2.03 40.81 16 26 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 27 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 28 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 29 C -0.20 -11.30 8.60 22.85 0.20 -11.10 16 30 C -0.09 -2.07 3.92 30.73 0.12 -1.95 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.41 16.65 8.14 -92.71 -0.75 15.90 16 38 H 0.10 4.99 6.47 -2.91 -0.02 4.98 16 39 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 41 H 0.29 13.65 8.30 -92.71 -0.77 12.89 16 42 H 0.11 6.27 6.17 -2.91 -0.02 6.26 16 43 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 44 H 0.06 1.61 7.77 -2.38 -0.02 1.59 16 Total: -1.00 -73.93 360.66 2.39 -71.54 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -1.62 Total: 44.44 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.25 Total: -37.24 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -2.23 Total: -93.65 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.04 Total: -25.91 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -73.93 2.39 -71.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.991 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds