Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.43001 * 2 1 4 4 C 1.53331 * 109.45386 * 119.77607 * 2 1 3 5 5 C 1.50883 * 108.22417 * 170.52041 * 4 2 1 6 6 C 1.34576 * 128.32665 * 163.41272 * 5 4 2 7 7 N 1.35195 * 107.61588 * 180.37913 * 6 5 4 8 8 H 0.97004 * 125.99453 * 179.97438 * 7 6 5 9 9 N 1.40308 * 107.99694 * 359.95329 * 7 6 5 10 10 C 1.30134 * 108.12155 * 359.95869 * 9 7 6 11 11 C 1.50945 * 128.28066 * 180.30071 * 10 9 7 12 12 H 1.08997 * 109.72048 * 43.58025 * 11 10 9 13 13 C 1.50701 * 109.71814 * 282.97989 * 11 10 9 14 14 O 1.21289 * 120.00146 * 240.00841 * 13 11 10 15 15 N 1.34781 * 120.00057 * 60.00028 * 13 11 10 16 16 C 1.39930 * 120.00068 * 174.87739 * 15 13 11 17 17 C 1.39289 * 119.94853 * 146.37163 * 16 15 13 18 18 C 1.38494 * 120.43167 * 179.97438 * 17 16 15 19 19 C 1.37681 * 120.31928 * 0.02562 * 18 17 16 20 20 C 1.40740 * 119.88398 * 0.02562 * 19 18 17 21 21 C 1.41413 * 120.20919 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00061 * 151.75125 * 21 20 19 23 23 C 1.39936 * 119.99742 * 331.75709 * 21 20 19 24 24 N 1.30827 * 120.00083 * 349.00325 * 23 21 20 25 25 Si 1.86800 * 119.99855 * 169.00764 * 23 21 20 26 26 H 1.48502 * 109.47016 * 59.99745 * 25 23 21 27 27 H 1.48500 * 109.46861 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47301 * 299.99628 * 25 23 21 29 29 C 1.38243 * 119.94881 * 326.09532 * 16 15 13 30 30 C 1.53031 * 109.42881 * 240.10295 * 2 1 3 31 31 H 1.09007 * 109.46705 * 179.90044 * 1 2 3 32 32 H 1.08998 * 109.46952 * 299.89309 * 1 2 3 33 33 H 1.08991 * 109.47247 * 59.89776 * 1 2 3 34 34 H 1.09001 * 109.67002 * 50.85454 * 4 2 1 35 35 H 1.08997 * 109.73325 * 290.22810 * 4 2 1 36 36 H 1.08003 * 126.18688 * 0.39161 * 6 5 4 37 37 H 0.96998 * 119.99338 * 354.87674 * 15 13 11 38 38 H 1.07999 * 119.78363 * 359.97404 * 17 16 15 39 39 H 1.08000 * 119.83956 * 180.02562 * 18 17 16 40 40 H 1.08002 * 120.05391 * 180.02562 * 19 18 17 41 41 H 0.96996 * 120.00141 * 180.02562 * 24 23 21 42 42 H 1.08001 * 120.16059 * 0.02562 * 29 16 15 43 43 H 1.08995 * 109.42957 * 48.08674 * 30 2 1 44 44 H 1.09007 * 109.42560 * 288.25366 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0407 -0.7180 1.2549 5 6 3.5307 -0.9100 1.1152 6 6 4.4275 -1.2064 2.0739 7 7 5.6446 -1.2729 1.4892 8 1 6.4823 -1.4697 1.9370 9 7 5.4833 -1.0078 0.1208 10 6 4.2196 -0.7923 -0.1034 11 6 3.5439 -0.4721 -1.4147 12 1 3.9394 -1.1170 -2.1993 13 6 3.7868 0.9714 -1.7727 14 8 2.8491 1.7285 -1.9092 15 7 5.0462 1.4213 -1.9411 16 6 5.2684 2.7320 -2.3777 17 6 6.3809 3.4368 -1.9241 18 6 6.6108 4.7344 -2.3501 19 6 5.7409 5.3425 -3.2271 20 6 4.6120 4.6430 -3.6932 21 6 3.7143 5.2607 -4.5945 22 1 3.1477 4.6591 -5.2897 23 6 3.5604 6.6516 -4.5857 24 7 4.0742 7.3604 -3.6136 25 14 2.6211 7.4960 -5.9620 26 1 1.2287 6.9810 -5.9995 27 1 2.6003 8.9611 -5.7206 28 1 3.2871 7.2170 -7.2596 29 6 4.3866 3.3234 -3.2630 30 6 2.0391 -0.7193 -1.2511 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3633 0.5122 0.8909 33 1 -0.3633 0.5154 -0.8890 34 1 1.5519 -1.6879 1.3472 35 1 1.8288 -0.1134 2.1367 36 1 4.2134 -1.3630 3.1209 37 1 5.7983 0.8363 -1.7597 38 1 7.0686 2.9684 -1.2357 39 1 7.4766 5.2719 -1.9926 40 1 5.9246 6.3544 -3.5569 41 1 3.9672 8.3245 -3.6073 42 1 3.5259 2.7764 -3.6185 43 1 1.5121 -0.3405 -2.1268 44 1 1.8560 -1.7895 -1.1537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598941162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = 24.600352 kcal Electronic energy + Delta-G solvation = -27316.985779 eV Core-core repulsion = 23619.822378 eV Total energy + Delta-G solvation = -3697.163401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.65725 -41.16618 -39.22145 -37.68135 -36.15373 -34.90404 -33.73857 -31.84551 -31.76434 -30.89857 -29.81769 -27.27879 -26.98520 -25.64301 -23.41246 -22.79344 -22.22742 -21.68147 -21.37901 -19.87989 -19.43566 -18.53960 -17.84596 -17.41168 -16.90253 -16.54905 -16.38827 -16.08768 -15.48181 -15.38608 -15.20341 -14.74768 -14.66273 -14.39523 -14.14075 -13.98244 -13.66103 -13.34605 -13.26233 -13.13418 -13.06878 -12.82537 -12.62743 -12.57582 -12.23950 -12.04644 -12.03605 -11.66401 -11.59047 -11.47721 -11.25836 -11.17675 -10.99924 -10.73110 -10.22487 -9.39104 -9.33910 -8.73778 -8.58094 -6.39512 0.81102 0.92170 0.97858 1.36394 1.47761 1.49410 1.57627 1.77365 2.04698 2.21485 2.31523 2.74953 3.42406 3.55826 3.71854 3.79287 3.92735 4.05143 4.27445 4.36599 4.42641 4.50580 4.56673 4.59425 4.72339 4.84945 4.88956 4.92369 5.01144 5.03425 5.07325 5.08760 5.11050 5.21715 5.25113 5.31763 5.37475 5.43900 5.62077 5.65563 5.74155 5.83406 6.04616 6.10080 6.33269 6.47089 6.60188 6.66996 6.67623 6.92994 6.99084 7.27896 8.37042 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.003459 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.050317 B = 8092.397936 C = 9246.837550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.039 0.961 4 C -0.029 4.029 5 C -0.252 4.252 6 C 0.078 3.922 7 N -0.470 5.470 8 H 0.454 0.546 9 N -0.311 5.311 10 C 0.069 3.931 11 C -0.018 4.018 12 H 0.129 0.871 13 C 0.512 3.488 14 O -0.547 6.547 15 N -0.659 5.659 16 C 0.157 3.843 17 C -0.254 4.254 18 C -0.092 4.092 19 C -0.192 4.192 20 C 0.090 3.910 21 C -0.500 4.500 22 H 0.068 0.932 23 C 0.033 3.967 24 N -0.832 5.832 25 Si 0.987 3.013 26 H -0.264 1.264 27 H -0.263 1.263 28 H -0.257 1.257 29 C -0.231 4.231 30 C -0.087 4.087 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.415 0.585 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.288 0.712 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -18.656 11.992 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.057 0.943 4 C -0.067 4.067 5 C -0.263 4.263 6 C -0.069 4.069 7 N -0.180 5.180 8 H 0.301 0.699 9 N -0.134 5.134 10 C -0.099 4.099 11 C -0.041 4.041 12 H 0.147 0.853 13 C 0.299 3.701 14 O -0.423 6.423 15 N -0.304 5.304 16 C 0.064 3.936 17 C -0.275 4.275 18 C -0.111 4.111 19 C -0.212 4.212 20 C 0.087 3.913 21 C -0.530 4.530 22 H 0.086 0.914 23 C -0.181 4.181 24 N -0.458 5.458 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.187 1.187 28 H -0.181 1.181 29 C -0.253 4.253 30 C -0.125 4.125 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.252 0.748 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.470 -18.010 11.496 21.371 hybrid contribution -0.151 0.544 -0.009 0.564 sum -0.621 -17.466 11.487 20.914 Atomic orbital electron populations 1.21727 0.93667 1.02652 1.01428 1.21148 0.96740 0.98764 0.94775 0.94250 1.20070 0.88431 1.01084 0.97104 1.20429 0.98668 1.15165 0.92052 1.22679 0.84176 0.99356 1.00652 1.46332 1.09790 1.56769 1.05129 0.69895 1.76869 1.17843 1.23529 0.95205 1.21764 0.91374 1.00837 0.95879 1.19907 0.98828 0.91230 0.94183 0.85293 1.21093 0.82242 0.90827 0.75937 1.90745 1.43033 1.58270 1.50259 1.43473 1.08971 1.12064 1.65861 1.17568 0.96322 0.84745 0.95010 1.20424 1.01620 0.96190 1.09244 1.20819 0.98671 0.94317 0.97252 1.21359 0.95519 1.00790 1.03561 1.17846 0.91523 0.91059 0.90822 1.19753 1.22339 0.92966 1.17987 0.91385 1.26756 0.95599 0.97627 0.98084 1.69853 1.37790 1.08556 1.29619 0.85199 0.78755 0.77255 0.78119 1.18886 1.18698 1.18097 1.20933 1.01798 0.98295 1.04261 1.21488 0.89904 1.02111 0.98999 0.90416 0.92260 0.94156 0.88786 0.90581 0.76313 0.74810 0.86205 0.86010 0.87404 0.90180 0.89234 0.91490 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.15 71.98 0.66 -2.22 16 2 C -0.10 -2.38 2.48 -10.67 -0.03 -2.41 16 3 H 0.04 1.36 6.32 -2.39 -0.02 1.35 16 4 C -0.03 -0.53 5.57 30.02 0.17 -0.37 16 5 C -0.25 -5.30 5.89 -20.10 -0.12 -5.42 16 6 C 0.08 1.15 11.95 83.34 1.00 2.15 16 7 N -0.47 -7.82 7.37 -57.88 -0.43 -8.25 16 8 H 0.45 4.35 8.96 -213.18 -1.91 2.44 16 9 N -0.31 -7.68 12.29 -47.14 -0.58 -8.26 16 10 C 0.07 1.77 6.14 43.44 0.27 2.04 16 11 C -0.02 -0.51 3.08 -12.08 -0.04 -0.55 16 12 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 13 C 0.51 19.84 6.50 87.66 0.57 20.41 16 14 O -0.55 -26.06 12.13 -3.06 -0.04 -26.10 16 15 N -0.66 -26.13 5.27 -303.64 -1.60 -27.73 16 16 C 0.16 7.63 6.26 38.10 0.24 7.86 16 17 C -0.25 -11.67 9.97 22.58 0.23 -11.45 16 18 C -0.09 -4.45 10.02 22.20 0.22 -4.23 16 19 C -0.19 -10.76 8.66 22.75 0.20 -10.56 16 20 C 0.09 5.35 5.55 -21.31 -0.12 5.23 16 21 C -0.50 -29.57 9.06 23.46 0.21 -29.36 16 22 H 0.07 3.94 7.87 -2.91 -0.02 3.92 16 23 C 0.03 1.78 5.25 85.25 0.45 2.23 16 24 N -0.83 -46.20 10.82 21.82 0.24 -45.96 16 25 Si 0.99 40.95 29.57 68.60 2.03 42.98 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 28 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 29 C -0.23 -12.97 8.39 22.85 0.19 -12.78 16 30 C -0.09 -2.12 4.27 30.73 0.13 -1.99 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.27 8.13 -2.39 -0.02 1.25 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.22 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.41 14.01 8.27 -92.71 -0.77 13.24 16 38 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 40 H 0.11 6.21 6.18 -2.91 -0.02 6.20 16 41 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 42 H 0.09 5.22 6.44 -2.91 -0.02 5.20 16 43 H 0.07 1.84 7.76 -2.39 -0.02 1.82 16 44 H 0.10 1.83 8.10 -2.38 -0.02 1.81 16 Total: -1.00 -76.79 358.18 2.22 -74.57 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -1.63 Total: 40.14 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 4.22 Total: -41.39 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -2.37 Total: -90.20 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.04 Total: -26.10 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -76.79 2.22 -74.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598941162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.173 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds