Wall clock time and date at job start Tue Mar 31 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.08998 * 109.47102 * 54.99666 * 3 2 1 5 5 C 1.53000 * 109.47001 * 174.99815 * 3 2 1 6 6 N 1.46893 * 109.47016 * 184.99528 * 5 3 2 7 7 C 1.46907 * 111.00010 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47025 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47482 * 55.00099 * 8 7 6 10 10 C 1.53000 * 109.47224 * 294.99844 * 8 7 6 11 11 C 1.53002 * 109.46959 * 175.00237 * 8 7 6 12 12 C 1.50701 * 109.46985 * 185.00008 * 11 8 7 13 13 H 1.08000 * 120.00135 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99774 * 179.97438 * 12 11 8 15 15 N 1.31508 * 120.00227 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99782 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47191 * 59.99871 * 16 14 12 18 18 H 1.48498 * 109.47008 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47150 * 299.99853 * 16 14 12 20 20 O 1.42898 * 109.46623 * 294.99581 * 3 2 1 21 21 C 1.35927 * 117.00007 * 94.12363 * 20 3 2 22 22 C 1.38705 * 120.05734 * 2.31790 * 21 20 3 23 23 C 1.38155 * 119.95295 * 179.74798 * 22 21 20 24 24 C 1.38272 * 120.07701 * 0.52795 * 23 22 21 25 25 C 1.38242 * 120.11986 * 359.72461 * 24 23 22 26 26 C 1.38257 * 120.04517 * 0.02562 * 25 24 23 27 27 Cl 1.73600 * 120.03867 * 179.97438 * 26 25 24 28 28 H 1.09005 * 109.46755 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47435 * 300.00457 * 1 2 3 30 30 H 1.09000 * 109.47215 * 60.00789 * 1 2 3 31 31 H 1.09000 * 109.47435 * 239.99543 * 2 1 3 32 32 H 1.09004 * 109.46812 * 119.99484 * 2 1 3 33 33 H 1.08996 * 109.47456 * 305.00081 * 5 3 2 34 34 H 1.09005 * 109.47062 * 64.99744 * 5 3 2 35 35 H 1.00901 * 111.00534 * 303.95481 * 6 5 3 36 36 H 1.09000 * 109.47257 * 300.00260 * 7 6 5 37 37 H 1.08997 * 109.46958 * 60.00193 * 7 6 5 38 38 H 1.08996 * 109.47099 * 300.00489 * 10 8 7 39 39 H 1.09007 * 109.46831 * 59.99844 * 10 8 7 40 40 H 1.08993 * 109.47235 * 180.02562 * 10 8 7 41 41 H 1.09000 * 109.46865 * 304.99424 * 11 8 7 42 42 H 1.08998 * 109.47572 * 64.99762 * 11 8 7 43 43 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 44 44 H 1.08003 * 120.02410 * 0.02562 * 22 21 20 45 45 H 1.08000 * 119.96003 * 180.25531 * 23 22 21 46 46 H 1.08008 * 119.93733 * 179.74877 * 24 23 22 47 47 H 1.07999 * 119.97536 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0444 2.8276 0.2461 7 6 5.5077 2.8684 0.3696 8 6 5.9687 4.3221 0.4931 9 1 5.4489 4.7988 1.3242 10 6 5.6510 5.0698 -0.8034 11 6 7.4771 4.3591 0.7465 12 6 7.9109 5.7816 0.9901 13 1 7.1835 6.5796 0.9661 14 6 9.2364 6.0643 1.2436 15 7 10.1220 5.0926 1.2733 16 14 9.7741 7.8277 1.5448 17 1 9.0592 8.3678 2.7290 18 1 11.2380 7.8634 1.7921 19 1 9.4527 8.6536 0.3533 20 8 1.6619 2.0813 -1.2211 21 6 0.5054 2.7953 -1.2117 22 6 -0.2250 2.9194 -0.0391 23 6 -1.3975 3.6500 -0.0307 24 6 -1.8493 4.2486 -1.1924 25 6 -1.1266 4.1226 -2.3641 26 6 0.0502 3.3969 -2.3770 27 17 0.9573 3.2383 -3.8486 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8570 0.8801 1.0113 34 1 4.0029 0.9836 -0.7596 35 1 3.7312 3.3880 -0.5324 36 1 5.8130 2.3142 1.2572 37 1 5.9597 2.4174 -0.5137 38 1 6.1708 4.5931 -1.6344 39 1 4.5763 5.0435 -0.9840 40 1 5.9797 6.1053 -0.7156 41 1 7.7136 3.7524 1.6207 42 1 8.0015 3.9631 -0.1231 43 1 11.0545 5.2915 1.4513 44 1 0.1249 2.4488 0.8679 45 1 -1.9642 3.7501 0.8832 46 1 -2.7684 4.8158 -1.1842 47 1 -1.4818 4.5907 -3.2702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602569027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:35 Heat of formation + Delta-G solvation = -41.036431 kcal Electronic energy + Delta-G solvation = -25368.732113 eV Core-core repulsion = 21769.829981 eV Total energy + Delta-G solvation = -3598.902132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75403 -38.27280 -36.75356 -36.47544 -34.53163 -33.36842 -31.88305 -31.02833 -30.24954 -28.33964 -26.73807 -25.24110 -23.75076 -23.12011 -22.71283 -21.83913 -20.71798 -18.93055 -18.87681 -16.59517 -16.52692 -16.24227 -16.00134 -15.64957 -14.99500 -14.68096 -14.38794 -14.24731 -14.04651 -13.93911 -13.50815 -13.41520 -12.87930 -12.74173 -12.48371 -12.22594 -12.13010 -12.00648 -11.83434 -11.66867 -11.61329 -11.46568 -11.30285 -11.00242 -10.91551 -10.84991 -10.72824 -10.58042 -10.30477 -10.15739 -9.68645 -9.13197 -9.11273 -8.94658 -8.36778 -8.30262 -8.16368 -5.95122 -3.96165 0.88259 1.07647 2.04659 2.91112 3.36473 3.36737 3.40539 3.43323 4.14009 4.44095 4.50295 4.54837 4.62684 4.77886 4.81994 4.86265 4.98026 5.06928 5.19841 5.24579 5.38774 5.40596 5.44402 5.56188 5.63498 5.67950 5.75046 5.80431 5.84692 5.86497 5.93579 5.99113 6.10365 6.14386 6.29772 6.37536 6.50647 6.60299 6.96047 7.12295 7.14822 7.20262 7.35175 7.65095 7.72324 7.88889 8.05218 8.49269 9.09960 9.67037 11.16429 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002637 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.671653 B =10615.822653 C =11320.782747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.143 4.143 3 C 0.080 3.920 4 H 0.089 0.911 5 C 0.060 3.940 6 N -0.691 5.691 7 C 0.065 3.935 8 C -0.084 4.084 9 H 0.065 0.935 10 C -0.134 4.134 11 C 0.029 3.971 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 O -0.295 6.295 21 C 0.152 3.848 22 C -0.198 4.198 23 C -0.076 4.076 24 C -0.152 4.152 25 C -0.075 4.075 26 C -0.075 4.075 27 Cl -0.059 7.059 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.344 0.656 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.041 0.959 39 H 0.031 0.969 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.142 0.858 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.172 -9.084 -4.924 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C 0.024 3.976 4 H 0.107 0.893 5 C -0.070 4.070 6 N -0.323 5.323 7 C -0.064 4.064 8 C -0.103 4.103 9 H 0.083 0.917 10 C -0.191 4.191 11 C -0.009 4.009 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 O -0.208 6.208 21 C 0.105 3.895 22 C -0.216 4.216 23 C -0.094 4.094 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.102 4.102 27 Cl -0.030 7.030 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.164 0.836 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.159 0.841 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.843 -9.152 -4.511 27.784 hybrid contribution 0.752 0.684 -0.661 1.212 sum -25.091 -8.468 -5.171 26.981 Atomic orbital electron populations 1.21937 0.95297 1.02073 1.02085 1.22016 0.96681 0.95880 1.03570 1.22812 0.96007 0.92783 0.86029 0.89311 1.22071 0.91329 0.92281 1.01282 1.60617 1.12787 1.09308 1.49632 1.22140 0.85100 0.99323 0.99817 1.21218 0.99807 0.91850 0.97386 0.91705 1.21733 0.98082 1.01787 0.97497 1.19101 0.88052 0.97007 0.96717 1.21208 0.93030 0.93260 1.47633 0.92619 1.25016 0.96909 0.96926 0.95675 1.69953 1.02255 1.31491 1.50038 0.86692 0.77379 0.85383 0.78749 1.20274 1.21387 1.20296 1.86207 1.35972 1.62135 1.36441 1.18649 0.86710 0.91625 0.92475 1.21372 0.97641 1.05077 0.97533 1.21040 0.95099 0.94865 0.98390 1.20992 1.01116 1.02649 0.92292 1.20908 0.92299 0.96781 0.99367 1.20227 0.96677 1.06188 0.87133 1.98376 1.74234 1.96953 1.33443 0.92383 0.92429 0.92371 0.90711 0.90048 0.89242 0.94326 0.83646 0.91463 0.95705 0.94024 0.94965 0.91896 0.96692 0.96759 0.93059 0.84056 0.85300 0.85185 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.45 37.16 0.31 -0.87 16 2 C -0.14 -1.18 5.64 -26.73 -0.15 -1.33 16 3 C 0.08 0.82 2.40 -26.73 -0.06 0.75 16 4 H 0.09 0.88 5.38 -51.93 -0.28 0.60 16 5 C 0.06 0.72 5.39 -3.83 -0.02 0.70 16 6 N -0.69 -10.38 6.50 -113.78 -0.74 -11.12 16 7 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 8 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 9 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 10 C -0.13 -2.62 8.78 37.16 0.33 -2.30 16 11 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 12 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 13 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 O -0.29 -3.52 8.64 -19.51 -0.17 -3.69 16 21 C 0.15 1.70 5.32 -39.20 -0.21 1.50 16 22 C -0.20 -1.84 7.16 -39.44 -0.28 -2.13 16 23 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 24 C -0.15 -1.18 10.04 -39.57 -0.40 -1.58 16 25 C -0.07 -0.68 9.83 -39.57 -0.39 -1.06 16 26 C -0.07 -0.83 6.33 -39.36 -0.25 -1.08 16 27 Cl -0.06 -0.69 28.51 -51.86 -1.48 -2.17 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 6.80 -51.93 -0.35 0.03 16 30 H 0.06 0.52 6.27 -51.93 -0.33 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.34 5.36 6.54 -39.29 -0.26 5.10 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 40 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.14 1.17 4.54 -52.48 -0.24 0.93 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 47 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -30.75 385.43 -10.73 -41.48 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.59 Total: 1.26 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.28 Total: -21.97 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.00 Total: -37.64 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.17 Total: -3.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.75 -10.73 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602569027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.444 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds