Wall clock time and date at job start Tue Mar 31 2020 14:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46900 * 2 1 4 4 N 1.46502 * 109.47193 * 120.00033 * 2 1 3 5 5 C 1.46501 * 119.99709 * 310.98980 * 4 2 1 6 6 C 1.52999 * 109.47387 * 270.00074 * 5 4 2 7 7 C 1.47201 * 109.47180 * 180.02562 * 6 5 4 8 8 N 5.65198 * 88.21609 * 75.74964 * 2 1 3 9 9 C 1.34767 * 120.00096 * 130.99219 * 4 2 1 10 10 O 1.21670 * 120.00225 * 189.47273 * 9 4 2 11 11 C 1.46888 * 120.00124 * 9.47809 * 9 4 2 12 12 C 1.36128 * 125.43847 * 27.12810 * 11 9 4 13 13 C 1.41695 * 107.75167 * 180.24510 * 12 11 9 14 14 C 1.40022 * 133.35127 * 179.82035 * 13 12 11 15 15 C 1.36575 * 119.82971 * 179.97438 * 14 13 12 16 16 C 1.38858 * 120.60230 * 359.97438 * 15 14 13 17 17 C 1.37847 * 120.63087 * 359.97438 * 16 15 14 18 18 C 1.39089 * 119.81297 * 0.02562 * 17 16 15 19 19 N 1.37839 * 133.15859 * 180.02562 * 18 17 16 20 20 C 1.36885 * 125.62252 * 359.93609 * 19 18 17 21 21 H 1.07998 * 120.00250 * 146.50800 * 20 19 18 22 22 C 1.39016 * 119.99965 * 326.50577 * 20 19 18 23 23 N 1.31347 * 120.00419 * 333.76476 * 22 20 19 24 24 Si 1.86806 * 119.99762 * 153.48944 * 22 20 19 25 25 H 1.48506 * 109.46874 * 180.27690 * 24 22 20 26 26 H 1.48503 * 109.47170 * 300.27168 * 24 22 20 27 27 H 1.48500 * 109.47256 * 60.27493 * 24 22 20 28 28 H 1.09002 * 109.47428 * 299.99787 * 1 2 3 29 29 H 1.08999 * 109.47490 * 60.00079 * 1 2 3 30 30 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47389 * 239.99981 * 2 1 3 32 32 H 1.09000 * 109.46745 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46984 * 300.00231 * 3 2 1 34 34 H 1.08999 * 109.46703 * 60.00379 * 3 2 1 35 35 H 1.09003 * 109.47397 * 30.00646 * 5 4 2 36 36 H 1.09005 * 109.47117 * 150.00235 * 5 4 2 37 37 H 1.08996 * 109.47029 * 300.00019 * 6 5 4 38 38 H 1.09000 * 109.47070 * 60.00435 * 6 5 4 39 39 H 1.08002 * 126.12013 * 0.02562 * 12 11 9 40 40 H 1.07998 * 120.08387 * 359.93543 * 14 13 12 41 41 H 1.07997 * 119.70092 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.68431 * 179.97438 * 16 15 14 43 43 H 1.08000 * 120.09203 * 180.02562 * 17 16 15 44 44 H 0.97005 * 119.99357 * 355.85330 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.4779 -0.3452 2.5133 6 6 2.3162 0.7759 3.1306 7 6 1.7735 1.1225 4.4543 8 7 1.3540 1.3906 5.4754 9 6 2.9648 -1.6436 1.0849 10 8 3.2472 -2.3355 2.0450 11 6 3.6554 -1.8469 -0.1955 12 6 3.8473 -0.8942 -1.1487 13 6 4.5466 -1.4947 -2.2249 14 6 5.0080 -1.0165 -3.4574 15 6 5.6678 -1.8568 -4.3082 16 6 5.8869 -3.1837 -3.9625 17 6 5.4430 -3.6772 -2.7544 18 6 4.7686 -2.8406 -1.8714 19 7 4.2180 -3.0348 -0.6228 20 6 4.2214 -4.2120 0.0757 21 1 4.2871 -4.2001 1.1537 22 6 4.1402 -5.4228 -0.6024 23 7 3.5630 -5.4782 -1.7809 24 14 4.8591 -6.9697 0.1591 25 1 4.6501 -8.1171 -0.7602 26 1 6.3137 -6.7784 0.3891 27 1 4.1850 -7.2435 1.4537 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4460 -0.0106 2.4063 36 1 1.5103 -1.2217 3.1606 37 1 3.3480 0.4412 3.2377 38 1 2.2838 1.6524 2.4834 39 1 3.5215 0.1341 -1.0958 40 1 4.8420 0.0140 -3.7348 41 1 6.0232 -1.4857 -5.2581 42 1 6.4100 -3.8353 -4.6468 43 1 5.6185 -4.7106 -2.4942 44 1 3.1403 -4.6876 -2.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609170801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:47 Heat of formation + Delta-G solvation = 58.964766 kcal Electronic energy + Delta-G solvation = -27988.551057 eV Core-core repulsion = 24292.877809 eV Total energy + Delta-G solvation = -3695.673248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89307 -39.36743 -37.01425 -36.39367 -35.94008 -34.01380 -32.73030 -30.80572 -30.49905 -29.12261 -28.34347 -27.19746 -24.83747 -24.53704 -22.73199 -21.51481 -20.84963 -20.11036 -19.01493 -18.19004 -17.59986 -16.68544 -15.99328 -15.72386 -15.25750 -14.92291 -14.80468 -14.32340 -14.21266 -14.07072 -13.87838 -13.50026 -13.27531 -13.14187 -13.02503 -12.83674 -12.58813 -12.50574 -12.32287 -12.07036 -11.97354 -11.78978 -11.64694 -11.25069 -11.17216 -10.93009 -10.87802 -10.81247 -10.50080 -10.41154 -10.33787 -9.92589 -9.36632 -9.07189 -8.77597 -8.56707 -7.55632 -7.06176 -6.82336 -4.46912 1.69429 2.55441 2.61347 2.67177 2.93175 3.04430 3.13894 3.17014 3.34608 3.84013 3.95272 4.08731 4.43708 4.64217 4.75657 4.87989 4.90213 4.93654 5.13367 5.14619 5.24242 5.43751 5.54738 5.60942 5.65546 5.73313 5.79474 5.84137 5.85733 5.98935 6.02193 6.15526 6.18011 6.29965 6.40031 6.53895 6.68752 6.80280 6.88206 6.97482 7.29988 7.40938 7.43232 7.48811 7.57607 7.73675 7.79893 7.90647 8.16142 8.64339 8.79452 9.07592 10.03423 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.004748 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.226677 B = 5896.209456 C = 7503.217244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 C -0.172 4.172 4 N -0.605 5.605 5 C 0.122 3.878 6 C -0.051 4.051 7 C 0.216 3.784 8 N -0.442 5.442 9 C 0.595 3.405 10 O -0.532 6.532 11 C -0.034 4.034 12 C -0.222 4.222 13 C -0.118 4.118 14 C -0.091 4.091 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.070 4.070 18 C 0.039 3.961 19 N -0.229 5.229 20 C -0.415 4.415 21 H 0.120 0.880 22 C 0.023 3.977 23 N -0.814 5.814 24 Si 1.077 2.923 25 H -0.272 1.272 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 9.948 -1.346 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 C -0.230 4.230 4 N -0.340 5.340 5 C -0.003 4.003 6 C -0.093 4.093 7 C -0.103 4.103 8 N -0.119 5.119 9 C 0.387 3.613 10 O -0.408 6.408 11 C -0.152 4.152 12 C -0.248 4.248 13 C -0.122 4.122 14 C -0.110 4.110 15 C -0.172 4.172 16 C -0.169 4.169 17 C -0.090 4.090 18 C -0.075 4.075 19 N 0.112 4.888 20 C -0.543 4.543 21 H 0.138 0.862 22 C -0.193 4.193 23 N -0.439 5.439 24 Si 0.900 3.100 25 H -0.197 1.197 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.037 8.017 0.615 8.595 hybrid contribution -0.192 1.642 -0.202 1.666 sum -3.229 9.659 0.413 10.193 Atomic orbital electron populations 1.22170 0.95198 1.02620 1.02091 1.21710 0.94128 0.93474 0.89760 1.22430 1.02325 0.96065 1.02178 1.47557 1.40563 1.39401 1.06435 1.21176 0.96629 0.97474 0.85008 1.19981 1.01820 1.01661 0.85809 1.29060 0.93387 0.93109 0.94695 1.81215 1.09392 1.09274 1.12047 1.17286 0.78359 0.78631 0.87069 1.90756 1.64647 1.45173 1.40199 1.19511 1.08256 0.90041 0.97346 1.20687 1.11209 0.98788 0.94152 1.17909 1.05234 0.93266 0.95818 1.20053 0.99542 0.98239 0.93137 1.20326 1.03236 0.94291 0.99357 1.20560 1.04163 0.95619 0.96509 1.20354 0.97159 0.98820 0.92666 1.18280 1.04726 0.95021 0.89466 1.40158 1.30669 1.06979 1.11003 1.21132 1.55309 0.82613 0.95289 0.86219 1.26930 0.94577 1.02291 0.95510 1.70660 1.22501 1.34093 1.16678 0.83392 0.77037 0.73532 0.76041 1.19656 1.19960 1.20025 0.92469 0.91308 0.92058 0.85976 0.91299 0.91339 0.92290 0.89529 0.88880 0.86919 0.86855 0.84257 0.87721 0.87791 0.87403 0.86107 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.91 37.16 0.33 -1.28 16 2 C 0.11 1.33 2.46 -67.93 -0.17 1.16 16 3 C -0.17 -1.54 7.93 37.16 0.29 -1.25 16 4 N -0.61 -8.62 2.40 -167.56 -0.40 -9.02 16 5 C 0.12 1.41 5.11 -4.04 -0.02 1.39 16 6 C -0.05 -0.49 5.79 -29.52 -0.17 -0.66 16 7 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 8 N -0.44 -6.27 18.54 42.15 0.78 -5.49 16 9 C 0.59 11.79 7.43 -12.76 -0.09 11.69 16 10 O -0.53 -12.20 14.78 5.22 0.08 -12.12 16 11 C -0.03 -0.74 6.20 -82.25 -0.51 -1.25 16 12 C -0.22 -4.28 8.35 -39.02 -0.33 -4.60 16 13 C -0.12 -2.50 6.16 -106.90 -0.66 -3.16 16 14 C -0.09 -1.68 10.06 -39.51 -0.40 -2.08 16 15 C -0.15 -2.76 9.97 -39.95 -0.40 -3.15 16 16 C -0.15 -2.91 10.02 -39.49 -0.40 -3.30 16 17 C -0.07 -1.61 8.40 -39.41 -0.33 -1.95 16 18 C 0.04 0.93 5.54 -83.83 -0.46 0.47 16 19 N -0.23 -5.72 2.68 -56.08 -0.15 -5.87 16 20 C -0.41 -10.84 9.16 -15.01 -0.14 -10.98 16 21 H 0.12 3.26 6.66 -52.49 -0.35 2.91 16 22 C 0.02 0.57 4.12 -17.47 -0.07 0.50 16 23 N -0.81 -21.15 11.64 55.50 0.65 -20.51 16 24 Si 1.08 21.91 30.00 -169.99 -5.10 16.81 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.78 4.63 -51.93 -0.24 1.54 16 32 H 0.07 0.68 6.69 -51.93 -0.35 0.33 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.43 5.87 -51.93 -0.30 0.12 16 35 H 0.09 0.80 5.93 -51.93 -0.31 0.49 16 36 H 0.09 1.27 7.32 -51.93 -0.38 0.89 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.11 0.83 5.47 -51.93 -0.28 0.54 16 39 H 0.14 2.15 4.07 -52.49 -0.21 1.93 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.12 2.91 6.23 -52.49 -0.33 2.58 16 44 H 0.29 7.87 7.03 -40.82 -0.29 7.58 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -30.34 355.50 -7.76 -38.10 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.13 Total: 9.03 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -3.84 Total: -16.29 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.88 Total: -40.88 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.10 Total: 16.81 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.34 -7.76 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609170801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.066 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds