Wall clock time and date at job start Tue Mar 31 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46900 * 2 1 4 4 N 1.46502 * 109.47193 * 120.00033 * 2 1 3 5 5 C 1.46501 * 119.99709 * 310.98980 * 4 2 1 6 6 C 1.52999 * 109.47387 * 270.00074 * 5 4 2 7 7 C 1.47201 * 109.47180 * 180.02562 * 6 5 4 8 8 N 5.65198 * 88.21609 * 75.74964 * 2 1 3 9 9 C 1.34767 * 120.00096 * 130.99219 * 4 2 1 10 10 O 1.21670 * 120.00225 * 189.47273 * 9 4 2 11 11 C 1.46888 * 120.00124 * 9.47809 * 9 4 2 12 12 C 1.36128 * 125.43847 * 27.12810 * 11 9 4 13 13 C 1.41695 * 107.75167 * 180.24510 * 12 11 9 14 14 C 1.40022 * 133.35127 * 179.82035 * 13 12 11 15 15 C 1.36575 * 119.82971 * 179.97438 * 14 13 12 16 16 C 1.38858 * 120.60230 * 359.97438 * 15 14 13 17 17 C 1.37847 * 120.63087 * 359.97438 * 16 15 14 18 18 C 1.39089 * 119.81297 * 0.02562 * 17 16 15 19 19 N 1.37839 * 133.15859 * 180.02562 * 18 17 16 20 20 C 1.36885 * 125.62252 * 359.93609 * 19 18 17 21 21 H 1.07998 * 120.00250 * 146.50800 * 20 19 18 22 22 C 1.39016 * 119.99965 * 326.50577 * 20 19 18 23 23 N 1.31347 * 120.00419 * 333.76476 * 22 20 19 24 24 Si 1.86806 * 119.99762 * 153.48944 * 22 20 19 25 25 H 1.48506 * 109.46874 * 180.27690 * 24 22 20 26 26 H 1.48503 * 109.47170 * 300.27168 * 24 22 20 27 27 H 1.48500 * 109.47256 * 60.27493 * 24 22 20 28 28 H 1.09002 * 109.47428 * 299.99787 * 1 2 3 29 29 H 1.08999 * 109.47490 * 60.00079 * 1 2 3 30 30 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47389 * 239.99981 * 2 1 3 32 32 H 1.09000 * 109.46745 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46984 * 300.00231 * 3 2 1 34 34 H 1.08999 * 109.46703 * 60.00379 * 3 2 1 35 35 H 1.09003 * 109.47397 * 30.00646 * 5 4 2 36 36 H 1.09005 * 109.47117 * 150.00235 * 5 4 2 37 37 H 1.08996 * 109.47029 * 300.00019 * 6 5 4 38 38 H 1.09000 * 109.47070 * 60.00435 * 6 5 4 39 39 H 1.08002 * 126.12013 * 0.02562 * 12 11 9 40 40 H 1.07998 * 120.08387 * 359.93543 * 14 13 12 41 41 H 1.07997 * 119.70092 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.68431 * 179.97438 * 16 15 14 43 43 H 1.08000 * 120.09203 * 180.02562 * 17 16 15 44 44 H 0.97005 * 119.99357 * 355.85330 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.4779 -0.3452 2.5133 6 6 2.3162 0.7759 3.1306 7 6 1.7735 1.1225 4.4543 8 7 1.3540 1.3906 5.4754 9 6 2.9648 -1.6436 1.0849 10 8 3.2472 -2.3355 2.0450 11 6 3.6554 -1.8469 -0.1955 12 6 3.8473 -0.8942 -1.1487 13 6 4.5466 -1.4947 -2.2249 14 6 5.0080 -1.0165 -3.4574 15 6 5.6678 -1.8568 -4.3082 16 6 5.8869 -3.1837 -3.9625 17 6 5.4430 -3.6772 -2.7544 18 6 4.7686 -2.8406 -1.8714 19 7 4.2180 -3.0348 -0.6228 20 6 4.2214 -4.2120 0.0757 21 1 4.2871 -4.2001 1.1537 22 6 4.1402 -5.4228 -0.6024 23 7 3.5630 -5.4782 -1.7809 24 14 4.8591 -6.9697 0.1591 25 1 4.6501 -8.1171 -0.7602 26 1 6.3137 -6.7784 0.3891 27 1 4.1850 -7.2435 1.4537 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4460 -0.0106 2.4063 36 1 1.5103 -1.2217 3.1606 37 1 3.3480 0.4412 3.2377 38 1 2.2838 1.6524 2.4834 39 1 3.5215 0.1341 -1.0958 40 1 4.8420 0.0140 -3.7348 41 1 6.0232 -1.4857 -5.2581 42 1 6.4100 -3.8353 -4.6468 43 1 5.6185 -4.7106 -2.4942 44 1 3.1403 -4.6876 -2.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609170801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:46 Heat of formation + Delta-G solvation = 42.767857 kcal Electronic energy + Delta-G solvation = -27989.253408 eV Core-core repulsion = 24292.877809 eV Total energy + Delta-G solvation = -3696.375599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47087 -40.73702 -38.24721 -37.59407 -37.45075 -35.72166 -33.73148 -32.31644 -31.80333 -30.72997 -29.75963 -28.06782 -26.49808 -25.87933 -24.02245 -22.88006 -22.35680 -21.66497 -20.44690 -19.63497 -18.60922 -18.02824 -17.43205 -17.40700 -16.56713 -16.29535 -15.97691 -15.87512 -15.45698 -15.44673 -15.22968 -14.75519 -14.72350 -14.54719 -14.29873 -13.98520 -13.83756 -13.69012 -13.55887 -13.34499 -13.01092 -12.90443 -12.80845 -12.72192 -12.44242 -12.19890 -12.14912 -12.06682 -11.96376 -11.77852 -11.62496 -11.48772 -10.94938 -10.81298 -10.41135 -9.78506 -9.37297 -8.78406 -8.46002 -6.38224 0.11707 1.02834 1.33817 1.42421 1.51014 1.55822 1.72190 1.73762 1.86406 2.23373 2.39713 2.80397 2.93236 3.11507 3.27611 3.66466 3.92669 3.98730 4.08559 4.19962 4.29017 4.38048 4.38992 4.43512 4.53557 4.67545 4.72077 4.76701 4.78858 4.91188 4.92367 4.98846 5.09758 5.15717 5.19503 5.24474 5.34685 5.37855 5.50831 5.55130 5.69193 5.79619 5.81827 5.91178 6.13601 6.18279 6.39264 6.50557 6.50789 6.96973 7.19999 7.32719 8.11671 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.004748 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.226677 B = 5896.209456 C = 7503.217244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 C -0.169 4.169 4 N -0.588 5.588 5 C 0.118 3.882 6 C -0.038 4.038 7 C 0.242 3.758 8 N -0.487 5.487 9 C 0.588 3.412 10 O -0.577 6.577 11 C -0.055 4.055 12 C -0.185 4.185 13 C -0.143 4.143 14 C -0.078 4.078 15 C -0.156 4.156 16 C -0.130 4.130 17 C -0.118 4.118 18 C 0.022 3.978 19 N -0.270 5.270 20 C -0.446 4.446 21 H 0.092 0.908 22 C -0.008 4.008 23 N -0.837 5.837 24 Si 1.119 2.881 25 H -0.265 1.265 26 H -0.266 1.266 27 H -0.268 1.268 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.184 0.816 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 13.919 -3.245 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 C -0.226 4.226 4 N -0.320 5.320 5 C -0.006 4.006 6 C -0.078 4.078 7 C -0.075 4.075 8 N -0.165 5.165 9 C 0.379 3.621 10 O -0.457 6.457 11 C -0.171 4.171 12 C -0.212 4.212 13 C -0.148 4.148 14 C -0.097 4.097 15 C -0.174 4.174 16 C -0.150 4.150 17 C -0.138 4.138 18 C -0.092 4.092 19 N 0.068 4.932 20 C -0.574 4.574 21 H 0.110 0.890 22 C -0.218 4.218 23 N -0.463 5.463 24 Si 0.936 3.064 25 H -0.189 1.189 26 H -0.191 1.191 27 H -0.193 1.193 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.168 0.832 39 H 0.201 0.799 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.150 0.850 43 H 0.112 0.888 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.416 12.034 -1.279 12.575 hybrid contribution -0.108 0.694 0.247 0.744 sum -3.524 12.728 -1.032 13.247 Atomic orbital electron populations 1.22157 0.93294 1.01803 1.04385 1.21921 0.95669 0.94863 0.87317 1.22414 1.01880 0.93565 1.04733 1.47585 1.38290 1.37642 1.08492 1.21355 0.98584 0.97347 0.83308 1.19951 1.00650 1.02039 0.85203 1.29209 0.92159 0.91719 0.94443 1.81252 1.10864 1.11009 1.13376 1.17359 0.79291 0.79503 0.85942 1.90727 1.66472 1.47201 1.41272 1.20236 1.08492 0.89708 0.98667 1.21219 1.07897 0.99889 0.92169 1.18432 1.06283 0.92354 0.97710 1.20562 0.97409 1.00339 0.91341 1.20803 1.02512 0.93127 1.00994 1.21001 1.01837 0.97101 0.95088 1.20381 1.00475 0.98097 0.94835 1.18825 1.04429 0.96694 0.89268 1.40274 1.33433 1.07414 1.12050 1.20870 1.58091 0.84159 0.94272 0.89047 1.28050 0.93922 1.04354 0.95440 1.70764 1.24922 1.32697 1.17958 0.82911 0.76884 0.70912 0.75667 1.18941 1.19129 1.19279 0.90138 0.89047 0.94489 0.88888 0.91913 0.88898 0.89768 0.86317 0.91536 0.87556 0.83242 0.79936 0.83306 0.83334 0.84993 0.88781 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.91 71.98 0.64 -1.97 16 2 C 0.10 2.17 2.46 44.99 0.11 2.28 16 3 C -0.17 -2.13 7.93 71.98 0.57 -1.56 16 4 N -0.59 -16.10 2.40 -802.27 -1.92 -18.02 16 5 C 0.12 2.53 5.11 86.38 0.44 2.97 16 6 C -0.04 -0.62 5.79 28.79 0.17 -0.46 16 7 C 0.24 5.11 15.43 89.44 1.38 6.49 16 8 N -0.49 -13.26 18.54 20.01 0.37 -12.89 16 9 C 0.59 24.11 7.43 86.51 0.64 24.75 16 10 O -0.58 -28.27 14.78 -4.25 -0.06 -28.33 16 11 C -0.06 -2.49 6.20 39.91 0.25 -2.25 16 12 C -0.19 -6.90 8.35 22.63 0.19 -6.72 16 13 C -0.14 -5.90 6.16 -21.34 -0.13 -6.03 16 14 C -0.08 -2.58 10.06 22.31 0.22 -2.36 16 15 C -0.16 -5.00 9.97 22.03 0.22 -4.78 16 16 C -0.13 -4.95 10.02 22.33 0.22 -4.73 16 17 C -0.12 -5.61 8.40 22.38 0.19 -5.42 16 18 C 0.02 1.07 5.54 39.06 0.22 1.29 16 19 N -0.27 -14.34 2.68 -331.34 -0.89 -15.22 16 20 C -0.45 -25.37 9.16 84.09 0.77 -24.60 16 21 H 0.09 5.51 6.66 -2.91 -0.02 5.49 16 22 C -0.01 -0.42 4.12 84.95 0.35 -0.07 16 23 N -0.84 -46.73 11.64 21.67 0.25 -46.48 16 24 Si 1.12 47.37 30.00 68.60 2.06 49.43 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 28 H 0.08 0.96 6.43 -2.39 -0.02 0.94 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 2.52 4.63 -2.39 -0.01 2.51 16 32 H 0.06 0.91 6.69 -2.39 -0.02 0.90 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.68 5.87 -2.39 -0.01 0.66 16 35 H 0.12 1.81 5.93 -2.39 -0.01 1.79 16 36 H 0.07 1.84 7.32 -2.38 -0.02 1.82 16 37 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.15 1.43 5.47 -2.39 -0.01 1.42 16 39 H 0.18 4.95 4.07 -2.91 -0.01 4.94 16 40 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.09 4.89 6.23 -2.91 -0.02 4.87 16 44 H 0.27 15.83 7.03 -92.70 -0.65 15.18 16 Total: -1.00 -75.80 355.50 7.43 -68.37 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 1.17 Total: 26.31 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 6.45 Total: -23.16 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -2.19 Total: -92.62 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.06 Total: 49.43 kcal Total: -75.80 7.43 -68.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609170801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.136 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds