Wall clock time and date at job start Tue Mar 31 2020 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47015 * 2 1 4 4 C 1.53001 * 109.46760 * 119.99787 * 2 1 3 5 5 N 1.46504 * 109.47006 * 65.00327 * 4 2 1 6 6 C 1.46504 * 119.99905 * 265.31395 * 5 4 2 7 7 C 1.50698 * 109.47309 * 264.47272 * 6 5 4 8 8 H 1.08003 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00101 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00206 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00212 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46758 * 59.99621 * 11 9 7 13 13 H 1.48495 * 109.47311 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46916 * 300.00019 * 11 9 7 15 15 C 1.34774 * 119.99898 * 85.31534 * 5 4 2 16 16 O 1.21274 * 120.00497 * 4.04842 * 15 5 4 17 17 C 1.50702 * 119.99490 * 184.04415 * 15 5 4 18 18 H 1.08999 * 109.47461 * 310.63178 * 17 15 5 19 19 C 1.52995 * 109.47357 * 70.63731 * 17 15 5 20 20 C 1.50700 * 109.46844 * 190.63373 * 17 15 5 21 21 C 1.38418 * 120.02637 * 120.00246 * 20 17 15 22 22 F 1.35105 * 120.01173 * 0.04110 * 21 20 17 23 23 C 1.38480 * 119.97731 * 180.02562 * 21 20 17 24 24 C 1.38203 * 120.02038 * 0.02562 * 23 21 20 25 25 C 1.38204 * 120.05689 * 359.97438 * 24 23 21 26 26 C 1.38424 * 120.02674 * 300.02254 * 20 17 15 27 27 F 1.35098 * 120.00961 * 0.02562 * 26 20 17 28 28 H 1.08994 * 109.47207 * 300.00200 * 1 2 3 29 29 H 1.09000 * 109.46633 * 60.00077 * 1 2 3 30 30 H 1.08999 * 109.46617 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47207 * 239.99800 * 2 1 3 32 32 H 1.08996 * 109.46803 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46936 * 299.99778 * 3 2 1 34 34 H 1.09003 * 109.47117 * 60.00018 * 3 2 1 35 35 H 1.08995 * 109.47210 * 305.00334 * 4 2 1 36 36 H 1.09001 * 109.46793 * 185.00112 * 4 2 1 37 37 H 1.09004 * 109.46436 * 24.47188 * 6 5 4 38 38 H 1.08993 * 109.46812 * 144.46867 * 6 5 4 39 39 H 0.96995 * 120.00215 * 179.97438 * 10 9 7 40 40 H 1.08997 * 109.47306 * 171.80956 * 19 17 15 41 41 H 1.09001 * 109.46828 * 291.80707 * 19 17 15 42 42 H 1.08995 * 109.47432 * 51.80598 * 19 17 15 43 43 H 1.08002 * 119.98652 * 179.97438 * 23 21 20 44 44 H 1.08004 * 119.97414 * 179.72186 * 24 23 21 45 45 H 1.08003 * 119.99245 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4244 -2.5834 1.8504 7 6 0.7565 -3.1152 3.2208 8 1 1.7800 -3.1178 3.5656 9 6 -0.2460 -3.5994 4.0339 10 7 -1.4923 -3.5967 3.6139 11 14 0.1657 -4.2594 5.7323 12 1 0.7964 -3.1854 6.5411 13 1 -1.0790 -4.7159 6.4012 14 1 1.1070 -5.4008 5.6050 15 6 2.4256 -3.0170 0.5296 16 8 3.4787 -2.6591 0.0462 17 6 1.9815 -4.4504 0.3913 18 1 1.6832 -4.8342 1.3669 19 6 0.7947 -4.5261 -0.5712 20 6 3.1190 -5.2789 -0.1479 21 6 3.6137 -6.3401 0.5904 22 9 3.0764 -6.6342 1.7946 23 6 4.6594 -7.1004 0.0942 24 6 5.2093 -6.7995 -1.1375 25 6 4.7163 -5.7402 -1.8756 26 6 3.6703 -4.9790 -1.3817 27 9 3.1891 -3.9430 -2.1029 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.2663 -1.7453 1.9435 38 1 -0.0386 -3.3717 1.2571 39 1 -2.1976 -3.9377 4.1858 40 1 0.5661 -5.5702 -0.7848 41 1 -0.0736 -4.0500 -0.1155 42 1 1.0458 -4.0119 -1.4989 43 1 5.0458 -7.9282 0.6704 44 1 6.0278 -7.3902 -1.5217 45 1 5.1471 -5.5058 -2.8378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764010873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:17 Heat of formation + Delta-G solvation = -113.724417 kcal Electronic energy + Delta-G solvation = -29483.661027 eV Core-core repulsion = 25329.810228 eV Total energy + Delta-G solvation = -4153.850800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.72324 -48.61582 -39.66864 -38.40786 -36.09347 -34.37285 -33.40816 -32.26468 -30.12514 -29.37033 -27.58212 -26.77377 -25.74846 -24.26621 -22.94429 -22.63728 -21.55629 -19.96910 -18.33846 -17.79402 -17.27112 -16.65477 -16.05134 -15.88117 -15.48650 -15.30355 -15.26066 -14.92956 -14.50681 -14.46175 -14.26151 -14.09521 -13.66723 -13.41558 -12.82814 -12.62052 -12.53176 -12.37290 -12.12065 -11.94183 -11.90731 -11.81571 -11.71596 -11.48328 -11.29269 -11.04072 -11.00066 -10.85954 -10.70221 -10.55090 -10.33893 -10.23150 -10.02324 -9.67308 -9.04270 -8.62565 -8.55147 -8.50155 -7.65056 -6.17541 -4.24432 1.12521 1.17201 3.26268 3.30409 3.33225 3.42814 3.49985 3.96550 4.14543 4.35470 4.61079 4.66921 4.86253 4.90370 5.15344 5.22635 5.24530 5.32844 5.41614 5.50538 5.62319 5.71978 5.88083 5.93183 5.97758 6.03392 6.05069 6.08154 6.14118 6.18604 6.20914 6.24231 6.29004 6.35100 6.42386 6.46297 6.56357 6.64780 6.76301 6.86917 6.94344 7.26487 7.58389 7.78238 8.07971 8.35388 8.80425 9.04484 9.43476 10.88736 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.006355 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.831725 B = 4404.853114 C = 6678.677834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.126 3.874 5 N -0.590 5.590 6 C 0.226 3.774 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.068 3.932 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.528 3.472 16 O -0.566 6.566 17 C -0.073 4.073 18 H 0.128 0.872 19 C -0.146 4.146 20 C -0.133 4.133 21 C 0.136 3.864 22 F -0.124 7.124 23 C -0.175 4.175 24 C -0.068 4.068 25 C -0.177 4.177 26 C 0.167 3.833 27 F -0.120 7.120 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.266 0.734 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 -2.464 -9.881 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.003 3.997 5 N -0.319 5.319 6 C 0.107 3.893 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.135 4.135 10 N -0.529 5.529 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.315 3.685 16 O -0.447 6.447 17 C -0.094 4.094 18 H 0.145 0.855 19 C -0.203 4.203 20 C -0.135 4.135 21 C 0.116 3.884 22 F -0.103 7.103 23 C -0.194 4.194 24 C -0.086 4.086 25 C -0.196 4.196 26 C 0.148 3.852 27 F -0.098 7.098 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.670 -2.274 -10.027 12.827 hybrid contribution -0.120 -0.256 1.299 1.329 sum 7.550 -2.530 -8.728 11.814 Atomic orbital electron populations 1.21866 0.95040 1.02444 1.00806 1.21489 0.96285 0.95798 0.99483 1.21743 1.00772 0.95997 1.01343 1.21345 0.99941 0.81365 0.97067 1.48088 1.25858 1.06805 1.51174 1.19754 0.80843 0.96474 0.92269 1.21485 0.94253 1.41921 1.00168 0.92277 1.24896 0.94790 0.95408 0.98430 1.69898 0.99603 1.45981 1.37403 0.86626 0.77814 0.79603 0.83946 1.20163 1.21105 1.19907 1.20006 0.83677 0.86937 0.77836 1.90591 1.23722 1.80101 1.50271 1.20164 0.93250 0.92851 1.03136 0.85465 1.21925 0.97214 1.02561 0.98574 1.19658 1.00987 0.98060 0.94805 1.17260 0.94130 0.95189 0.81787 1.91564 1.84812 1.92342 1.41545 1.21086 0.97936 1.02198 0.98157 1.20719 0.98730 0.96030 0.93143 1.21123 0.98220 0.97844 1.02380 1.17083 0.93644 0.85262 0.89244 1.91509 1.86646 1.55425 1.76209 0.92744 0.93677 0.91862 0.91276 0.92883 0.93019 0.92760 0.90533 0.91370 0.94054 0.93552 0.92470 0.92011 0.89614 0.92167 0.84364 0.84418 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.33 37.16 0.31 -1.97 16 2 C -0.11 -1.81 3.10 -90.61 -0.28 -2.09 16 3 C -0.14 -1.89 9.19 37.16 0.34 -1.54 16 4 C 0.13 2.38 4.81 -4.04 -0.02 2.36 16 5 N -0.59 -12.49 2.22 -175.06 -0.39 -12.88 16 6 C 0.23 5.26 3.73 -5.19 -0.02 5.24 16 7 C -0.54 -14.05 8.65 -34.44 -0.30 -14.35 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 11 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.53 11.33 6.49 -10.99 -0.07 11.26 16 16 O -0.57 -12.94 13.66 5.56 0.08 -12.87 16 17 C -0.07 -1.44 1.97 -92.92 -0.18 -1.62 16 18 H 0.13 2.78 6.04 -51.93 -0.31 2.46 16 19 C -0.15 -2.54 8.60 37.16 0.32 -2.22 16 20 C -0.13 -2.37 4.50 -104.49 -0.47 -2.84 16 21 C 0.14 2.24 7.25 -39.43 -0.29 1.96 16 22 F -0.12 -2.26 16.19 2.25 0.04 -2.23 16 23 C -0.17 -2.23 10.03 -39.51 -0.40 -2.63 16 24 C -0.07 -0.76 10.04 -39.61 -0.40 -1.15 16 25 C -0.18 -2.28 10.02 -39.51 -0.40 -2.67 16 26 C 0.17 2.77 6.11 -39.43 -0.24 2.52 16 27 F -0.12 -2.14 13.56 2.25 0.03 -2.11 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.11 6.35 -51.93 -0.33 0.78 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 36 H 0.07 1.32 7.51 -51.93 -0.39 0.93 16 37 H 0.04 1.00 6.76 -51.93 -0.35 0.65 16 38 H 0.05 1.10 4.30 -51.93 -0.22 0.88 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.09 1.57 5.49 -51.93 -0.29 1.29 16 42 H 0.06 1.01 6.55 -51.93 -0.34 0.67 16 43 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 45 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -29.17 366.36 -7.62 -36.78 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.42 Total: 3.56 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.19 Total: -8.05 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.35 Total: -36.38 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.34 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.17 -7.62 -36.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764010873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.941 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds