Wall clock time and date at job start Tue Mar 31 2020 15:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47015 * 2 1 4 4 C 1.53001 * 109.46760 * 119.99787 * 2 1 3 5 5 N 1.46504 * 109.47006 * 65.00327 * 4 2 1 6 6 C 1.46504 * 119.99905 * 265.31395 * 5 4 2 7 7 C 1.50698 * 109.47309 * 264.47272 * 6 5 4 8 8 H 1.08003 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00101 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00206 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00212 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46758 * 59.99621 * 11 9 7 13 13 H 1.48495 * 109.47311 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46916 * 300.00019 * 11 9 7 15 15 C 1.34774 * 119.99898 * 85.31534 * 5 4 2 16 16 O 1.21274 * 120.00497 * 4.04842 * 15 5 4 17 17 C 1.50702 * 119.99490 * 184.04415 * 15 5 4 18 18 H 1.08999 * 109.47461 * 310.63178 * 17 15 5 19 19 C 1.52995 * 109.47357 * 70.63731 * 17 15 5 20 20 C 1.50700 * 109.46844 * 190.63373 * 17 15 5 21 21 C 1.38418 * 120.02637 * 120.00246 * 20 17 15 22 22 F 1.35105 * 120.01173 * 0.04110 * 21 20 17 23 23 C 1.38480 * 119.97731 * 180.02562 * 21 20 17 24 24 C 1.38203 * 120.02038 * 0.02562 * 23 21 20 25 25 C 1.38204 * 120.05689 * 359.97438 * 24 23 21 26 26 C 1.38424 * 120.02674 * 300.02254 * 20 17 15 27 27 F 1.35098 * 120.00961 * 0.02562 * 26 20 17 28 28 H 1.08994 * 109.47207 * 300.00200 * 1 2 3 29 29 H 1.09000 * 109.46633 * 60.00077 * 1 2 3 30 30 H 1.08999 * 109.46617 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47207 * 239.99800 * 2 1 3 32 32 H 1.08996 * 109.46803 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46936 * 299.99778 * 3 2 1 34 34 H 1.09003 * 109.47117 * 60.00018 * 3 2 1 35 35 H 1.08995 * 109.47210 * 305.00334 * 4 2 1 36 36 H 1.09001 * 109.46793 * 185.00112 * 4 2 1 37 37 H 1.09004 * 109.46436 * 24.47188 * 6 5 4 38 38 H 1.08993 * 109.46812 * 144.46867 * 6 5 4 39 39 H 0.96995 * 120.00215 * 179.97438 * 10 9 7 40 40 H 1.08997 * 109.47306 * 171.80956 * 19 17 15 41 41 H 1.09001 * 109.46828 * 291.80707 * 19 17 15 42 42 H 1.08995 * 109.47432 * 51.80598 * 19 17 15 43 43 H 1.08002 * 119.98652 * 179.97438 * 23 21 20 44 44 H 1.08004 * 119.97414 * 179.72186 * 24 23 21 45 45 H 1.08003 * 119.99245 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4244 -2.5834 1.8504 7 6 0.7565 -3.1152 3.2208 8 1 1.7800 -3.1178 3.5656 9 6 -0.2460 -3.5994 4.0339 10 7 -1.4923 -3.5967 3.6139 11 14 0.1657 -4.2594 5.7323 12 1 0.7964 -3.1854 6.5411 13 1 -1.0790 -4.7159 6.4012 14 1 1.1070 -5.4008 5.6050 15 6 2.4256 -3.0170 0.5296 16 8 3.4787 -2.6591 0.0462 17 6 1.9815 -4.4504 0.3913 18 1 1.6832 -4.8342 1.3669 19 6 0.7947 -4.5261 -0.5712 20 6 3.1190 -5.2789 -0.1479 21 6 3.6137 -6.3401 0.5904 22 9 3.0764 -6.6342 1.7946 23 6 4.6594 -7.1004 0.0942 24 6 5.2093 -6.7995 -1.1375 25 6 4.7163 -5.7402 -1.8756 26 6 3.6703 -4.9790 -1.3817 27 9 3.1891 -3.9430 -2.1029 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.2663 -1.7453 1.9435 38 1 -0.0386 -3.3717 1.2571 39 1 -2.1976 -3.9377 4.1858 40 1 0.5661 -5.5702 -0.7848 41 1 -0.0736 -4.0500 -0.1155 42 1 1.0458 -4.0119 -1.4989 43 1 5.0458 -7.9282 0.6704 44 1 6.0278 -7.3902 -1.5217 45 1 5.1471 -5.5058 -2.8378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764010873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:16 Heat of formation + Delta-G solvation = -127.477264 kcal Electronic energy + Delta-G solvation = -29484.257396 eV Core-core repulsion = 25329.810228 eV Total energy + Delta-G solvation = -4154.447168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02208 -49.88167 -41.25961 -39.61285 -37.61294 -36.02873 -34.93657 -34.10315 -31.21216 -30.60959 -29.45568 -28.02007 -27.32322 -25.76394 -24.67435 -23.78437 -22.92259 -21.33991 -19.88927 -19.03163 -18.84169 -18.44871 -17.55772 -17.38620 -16.87008 -16.54867 -16.53001 -16.31208 -16.23103 -16.07356 -15.67537 -15.32132 -15.06758 -14.81240 -14.47895 -14.19526 -13.84517 -13.71825 -13.68578 -13.37120 -13.14072 -13.12637 -13.01245 -12.96295 -12.83540 -12.67856 -12.53291 -12.42931 -12.14452 -12.09430 -11.92516 -11.77836 -11.58562 -11.54403 -10.75148 -10.51058 -9.83497 -9.66794 -9.42010 -8.22104 -6.35709 0.00551 0.06636 1.37912 1.39305 1.46481 1.73326 2.22882 2.38505 2.52154 3.00066 3.07308 3.39138 3.48734 3.58913 3.84963 3.91960 3.99132 4.02868 4.16112 4.18423 4.27968 4.32054 4.56077 4.63557 4.67330 4.77547 4.78616 4.84698 4.87585 4.91872 4.96893 4.99558 5.01232 5.05617 5.09476 5.16451 5.20098 5.22276 5.35276 5.41068 5.43809 5.65204 5.84271 5.88349 6.07093 6.52914 6.79412 7.27439 7.39128 8.82616 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.006355 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.831725 B = 4404.853114 C = 6678.677834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.134 4.134 4 C 0.122 3.878 5 N -0.593 5.593 6 C 0.243 3.757 7 C -0.550 4.550 8 H 0.043 0.957 9 C 0.029 3.971 10 N -0.914 5.914 11 Si 0.946 3.054 12 H -0.272 1.272 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.523 3.477 16 O -0.582 6.582 17 C -0.069 4.069 18 H 0.097 0.903 19 C -0.135 4.135 20 C -0.161 4.161 21 C 0.105 3.895 22 F -0.145 7.145 23 C -0.162 4.162 24 C -0.048 4.048 25 C -0.166 4.166 26 C 0.140 3.860 27 F -0.136 7.136 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.269 0.731 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.169 0.831 44 H 0.190 0.810 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 -3.280 -10.873 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.192 4.192 4 C -0.001 4.001 5 N -0.322 5.322 6 C 0.123 3.877 7 C -0.589 4.589 8 H 0.061 0.939 9 C -0.172 4.172 10 N -0.553 5.553 11 Si 0.772 3.228 12 H -0.198 1.198 13 H -0.201 1.201 14 H -0.201 1.201 15 C 0.311 3.689 16 O -0.464 6.464 17 C -0.091 4.091 18 H 0.115 0.885 19 C -0.192 4.192 20 C -0.163 4.163 21 C 0.085 3.915 22 F -0.123 7.123 23 C -0.180 4.180 24 C -0.065 4.065 25 C -0.184 4.184 26 C 0.120 3.880 27 F -0.114 7.114 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.186 0.814 44 H 0.208 0.792 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.380 -3.077 -11.021 14.796 hybrid contribution -0.567 -0.038 1.563 1.663 sum 8.813 -3.115 -9.458 13.297 Atomic orbital electron populations 1.21805 0.94583 1.01220 1.02009 1.21399 0.96551 0.97262 0.97033 1.21695 1.00866 0.93794 1.02799 1.21507 0.99490 0.80525 0.98566 1.48109 1.25250 1.07910 1.50927 1.19418 0.81355 0.95688 0.91251 1.21637 0.93512 1.42259 1.01490 0.93898 1.25522 0.94698 0.95564 1.01463 1.69971 1.00196 1.46569 1.38525 0.85783 0.77805 0.78910 0.80317 1.19771 1.20080 1.20124 1.20379 0.83388 0.87740 0.77397 1.90554 1.24249 1.80600 1.50963 1.20025 0.95030 0.91841 1.02166 0.88483 1.21826 0.95845 1.03495 0.98035 1.19644 1.01480 0.99043 0.96169 1.17684 0.95910 0.96336 0.81535 1.91505 1.85449 1.92559 1.42804 1.21521 0.95912 1.01779 0.98828 1.21327 0.98640 0.94940 0.91601 1.21570 0.96303 0.97068 1.03496 1.17443 0.95325 0.86021 0.89195 1.91460 1.87138 1.56400 1.76426 0.92628 0.91294 0.94305 0.93022 0.92730 0.91051 0.91787 0.90708 0.92174 0.95082 0.94056 0.92214 0.90330 0.91145 0.91774 0.81357 0.79237 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.33 71.99 0.60 -3.80 16 2 C -0.10 -3.37 3.10 -10.79 -0.03 -3.40 16 3 C -0.13 -3.41 9.19 71.98 0.66 -2.75 16 4 C 0.12 4.75 4.81 86.38 0.42 5.17 16 5 N -0.59 -26.35 2.22 -826.15 -1.83 -28.19 16 6 C 0.24 11.88 3.73 85.63 0.32 12.20 16 7 C -0.55 -29.76 8.65 25.60 0.22 -29.54 16 8 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 9 C 0.03 1.53 5.46 84.65 0.46 2.00 16 10 N -0.91 -50.67 13.29 21.44 0.28 -50.38 16 11 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 15 C 0.52 23.50 6.49 87.66 0.57 24.07 16 16 O -0.58 -27.52 13.66 -3.01 -0.04 -27.56 16 17 C -0.07 -2.88 1.97 -12.29 -0.02 -2.90 16 18 H 0.10 4.56 6.04 -2.39 -0.01 4.54 16 19 C -0.13 -4.95 8.60 71.98 0.62 -4.33 16 20 C -0.16 -5.87 4.50 -19.78 -0.09 -5.96 16 21 C 0.10 3.45 7.25 22.37 0.16 3.61 16 22 F -0.14 -5.45 16.19 44.97 0.73 -4.72 16 23 C -0.16 -3.67 10.03 22.32 0.22 -3.44 16 24 C -0.05 -0.84 10.04 22.25 0.22 -0.62 16 25 C -0.17 -3.76 10.02 22.32 0.22 -3.54 16 26 C 0.14 4.54 6.11 22.37 0.14 4.68 16 27 F -0.14 -4.91 13.56 44.97 0.61 -4.30 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.40 6.35 -2.39 -0.02 1.39 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 36 H 0.06 2.41 7.51 -2.39 -0.02 2.40 16 37 H 0.03 1.57 6.76 -2.38 -0.02 1.56 16 38 H 0.04 2.08 4.30 -2.39 -0.01 2.07 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 41 H 0.07 2.75 5.49 -2.39 -0.01 2.74 16 42 H 0.06 2.26 6.55 -2.39 -0.02 2.25 16 43 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 44 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -65.98 366.36 7.46 -58.52 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.00 Total: 19.94 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.69 Total: -8.55 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -1.55 Total: -78.57 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.04 Total: -27.56 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 1.34 Total: -9.02 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.98 7.46 -58.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764010873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.959 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds