Wall clock time and date at job start Tue Mar 31 2020 14:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99908 * 2 1 4 4 N 1.46901 * 109.46895 * 122.48230 * 3 2 1 5 5 C 1.46893 * 111.00339 * 287.34524 * 4 3 2 6 6 C 1.50703 * 109.47709 * 170.00123 * 5 4 3 7 7 N 1.29831 * 118.34297 * 0.02562 * 6 5 4 8 8 C 1.35631 * 121.62360 * 179.97438 * 7 6 5 9 9 C 1.39635 * 121.62404 * 180.02562 * 8 7 6 10 10 C 1.37714 * 119.69349 * 179.97438 * 9 8 7 11 11 C 1.38876 * 120.82740 * 0.02562 * 10 9 8 12 12 C 1.37792 * 120.57066 * 359.97438 * 11 10 9 13 13 C 1.39372 * 119.51659 * 0.02562 * 12 11 10 14 14 C 1.46965 * 121.90492 * 180.27669 * 13 12 11 15 15 O 1.21725 * 121.28478 * 359.97438 * 14 13 12 16 16 N 1.35344 * 117.42570 * 180.21155 * 14 13 12 17 17 C 1.37102 * 119.71516 * 179.76707 * 16 14 13 18 18 H 1.08000 * 119.99565 * 139.64034 * 17 16 14 19 19 C 1.39075 * 120.00401 * 319.64056 * 17 16 14 20 20 N 1.31250 * 120.00335 * 145.64106 * 19 17 16 21 21 Si 1.86802 * 119.99590 * 325.63463 * 19 17 16 22 22 H 1.48499 * 109.47440 * 275.47635 * 21 19 17 23 23 H 1.48499 * 109.47357 * 35.47672 * 21 19 17 24 24 H 1.48504 * 109.46927 * 155.48048 * 21 19 17 25 25 C 1.46900 * 111.00177 * 163.38644 * 4 3 2 26 26 C 1.53007 * 117.49566 * 7.39841 * 25 4 3 27 27 C 1.53002 * 117.49854 * 298.77751 * 25 4 3 28 28 H 1.07999 * 120.00000 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00016 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00293 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46969 * 2.48510 * 3 2 1 32 32 H 1.08995 * 109.47452 * 242.48337 * 3 2 1 33 33 H 1.08997 * 109.47569 * 49.99659 * 5 4 3 34 34 H 1.09011 * 109.46825 * 289.99962 * 5 4 3 35 35 H 1.07997 * 120.15138 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.58720 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.71552 * 180.02562 * 11 10 9 38 38 H 1.08003 * 120.24087 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00142 * 179.97438 * 20 19 17 40 40 H 1.08994 * 115.55460 * 153.11052 * 25 4 3 41 41 H 1.08998 * 117.49688 * 0.02562 * 26 25 4 42 42 H 1.08998 * 117.49532 * 145.02211 * 26 25 4 43 43 H 1.08998 * 117.50228 * 214.97684 * 27 25 4 44 44 H 1.09004 * 117.49769 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9525 1.3573 1.1683 5 6 2.1855 1.5576 2.4050 6 6 3.0898 1.3617 3.5945 7 7 4.3352 1.0643 3.3796 8 6 5.2073 0.8740 4.4007 9 6 6.5468 0.5546 4.1696 10 6 7.3981 0.3704 5.2364 11 6 6.9413 0.4979 6.5416 12 6 5.6240 0.8124 6.7956 13 6 4.7459 1.0029 5.7302 14 6 3.3323 1.3456 5.9405 15 8 2.8734 1.4761 7.0603 16 7 2.5594 1.5056 4.8410 17 6 1.2328 1.8211 4.9829 18 1 0.7742 2.5382 4.3182 19 6 0.4775 1.2177 5.9828 20 7 -0.4773 1.8909 6.5808 21 14 0.8221 -0.5513 6.4744 22 1 0.0996 -1.4695 5.5579 23 1 2.2812 -0.8136 6.3891 24 1 0.3591 -0.7770 7.8673 25 6 3.9733 2.4012 1.0070 26 6 3.8443 3.3352 -0.1981 27 6 4.9402 2.2678 -0.1713 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3560 2.1331 0.0446 32 1 2.6563 1.3825 -0.9113 33 1 1.3688 0.8370 2.4469 34 1 1.7787 2.5689 2.4204 35 1 6.9136 0.4524 3.1590 36 1 8.4337 0.1230 5.0556 37 1 7.6246 0.3500 7.3648 38 1 5.2744 0.9098 7.8128 39 1 -1.0042 1.4699 7.2779 40 1 4.3634 2.8244 1.9326 41 1 3.0017 3.1752 -0.8708 42 1 4.1494 4.3731 -0.0652 43 1 5.9662 2.6035 -0.0210 44 1 4.8185 1.4056 -0.8270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772379948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:47 Heat of formation + Delta-G solvation = 98.050339 kcal Electronic energy + Delta-G solvation = -28202.316813 eV Core-core repulsion = 24508.338442 eV Total energy + Delta-G solvation = -3693.978371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80278 -38.88554 -37.77831 -36.50286 -34.74624 -33.88417 -32.51253 -32.27022 -30.57530 -29.41561 -27.03106 -25.88317 -24.89712 -22.96523 -22.24229 -22.10462 -21.07810 -20.23276 -19.26749 -18.85832 -17.94336 -17.26452 -16.30885 -15.96839 -15.51973 -15.19983 -14.71678 -14.57153 -14.38300 -14.15386 -13.83811 -13.49820 -13.30560 -12.99120 -12.93961 -12.86435 -12.65160 -12.42860 -11.95495 -11.72196 -11.42012 -11.40143 -11.30327 -11.23656 -10.98406 -10.90318 -10.81341 -10.36878 -10.24156 -10.13222 -9.51002 -9.28713 -9.12089 -8.91879 -8.62913 -8.49545 -7.85593 -7.22905 -6.91893 -4.53136 1.32687 1.47906 2.35887 2.96927 3.07970 3.16168 3.23922 3.62397 3.64485 4.04711 4.08775 4.27783 4.50968 4.73258 4.94420 5.01935 5.07172 5.14988 5.22558 5.24910 5.29852 5.39206 5.43970 5.49945 5.63275 5.72792 5.77671 5.82463 5.87759 5.97977 6.04020 6.07876 6.09516 6.18013 6.28331 6.37742 6.55677 6.67908 6.73362 6.79824 6.91352 6.93616 7.16596 7.30835 7.33899 7.39643 7.44541 7.93673 8.29395 8.61253 8.99221 9.17239 10.10761 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.006635 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.383673 B = 4218.825540 C = 6404.875686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 C 0.076 3.924 4 N -0.484 5.484 5 C 0.126 3.874 6 C 0.354 3.646 7 N -0.532 5.532 8 C 0.167 3.833 9 C -0.126 4.126 10 C -0.088 4.088 11 C -0.173 4.173 12 C -0.039 4.039 13 C -0.216 4.216 14 C 0.507 3.493 15 O -0.523 6.523 16 N -0.361 5.361 17 C -0.399 4.399 18 H 0.119 0.881 19 C 0.123 3.877 20 N -0.791 5.791 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.265 1.265 24 H -0.275 1.275 25 C 0.055 3.945 26 C -0.236 4.236 27 C -0.167 4.167 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.286 0.714 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 -1.537 -11.252 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.160 4.160 3 C -0.051 4.051 4 N -0.205 5.205 5 C -0.003 4.003 6 C 0.092 3.908 7 N -0.258 5.258 8 C 0.050 3.950 9 C -0.146 4.146 10 C -0.108 4.108 11 C -0.192 4.192 12 C -0.059 4.059 13 C -0.223 4.223 14 C 0.304 3.696 15 O -0.400 6.400 16 N -0.065 5.065 17 C -0.524 4.524 18 H 0.136 0.864 19 C -0.098 4.098 20 N -0.418 5.418 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.189 1.189 24 H -0.200 1.200 25 C -0.055 4.055 26 C -0.276 4.276 27 C -0.205 4.205 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.005 -1.946 -11.010 13.194 hybrid contribution -0.607 0.020 1.224 1.367 sum 6.398 -1.926 -9.786 11.850 Atomic orbital electron populations 1.23860 0.95933 1.01842 1.01420 1.22902 0.95462 0.98652 0.98971 1.21372 0.94753 0.94833 0.94173 1.61451 1.13209 1.45039 1.00780 1.20797 0.93222 1.01867 0.84425 1.22750 0.90966 0.91067 0.86019 1.68556 1.00832 1.25653 1.30757 1.18863 0.93942 0.94463 0.87718 1.20627 0.91253 1.03605 0.99076 1.21018 0.98980 0.98289 0.92497 1.20860 0.95449 1.06284 0.96652 1.20903 0.92521 0.94151 0.98282 1.20760 0.94664 1.11657 0.95242 1.18447 0.85641 0.80423 0.85121 1.90663 1.74925 1.51897 1.22524 1.42490 1.10934 1.48504 1.04572 1.19122 0.82763 1.28851 1.21665 0.86406 1.25183 0.93584 0.98827 0.92193 1.69825 1.18773 1.36014 1.17153 0.86552 0.80082 0.83188 0.78396 1.20335 1.18948 1.19998 1.22543 0.96588 0.93000 0.93340 1.23673 1.02338 0.96611 1.04947 1.22926 0.95219 1.00037 1.02360 0.88472 0.88693 0.86906 0.93980 0.89643 0.87257 0.91936 0.85445 0.86331 0.86449 0.85781 0.90345 0.85899 0.88705 0.89340 0.88980 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.14 -1.74 8.85 -36.02 -0.32 -2.06 16 3 C 0.08 0.94 4.07 -4.97 -0.02 0.92 16 4 N -0.48 -7.31 4.32 -229.52 -0.99 -8.31 16 5 C 0.13 2.22 3.91 -4.98 -0.02 2.20 16 6 C 0.35 7.49 7.01 -154.88 -1.09 6.40 16 7 N -0.53 -10.81 7.59 -8.10 -0.06 -10.88 16 8 C 0.17 3.43 6.63 -84.50 -0.56 2.87 16 9 C -0.13 -2.14 10.03 -39.25 -0.39 -2.53 16 10 C -0.09 -1.32 10.00 -39.54 -0.40 -1.71 16 11 C -0.17 -2.77 10.02 -39.51 -0.40 -3.17 16 12 C -0.04 -0.77 9.68 -39.32 -0.38 -1.15 16 13 C -0.22 -4.86 5.89 -104.77 -0.62 -5.48 16 14 C 0.51 13.06 5.56 -12.47 -0.07 12.99 16 15 O -0.52 -14.76 13.53 5.17 0.07 -14.70 16 16 N -0.36 -8.84 2.31 -59.56 -0.14 -8.98 16 17 C -0.40 -10.24 8.57 -14.88 -0.13 -10.37 16 18 H 0.12 2.97 7.18 -52.49 -0.38 2.60 16 19 C 0.12 3.26 4.38 -17.49 -0.08 3.19 16 20 N -0.79 -21.44 13.95 55.50 0.77 -20.66 16 21 Si 0.89 22.14 26.38 -169.99 -4.48 17.65 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.99 5.93 56.52 0.34 -6.66 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.05 0.79 5.09 -67.71 -0.34 0.44 16 26 C -0.24 -2.77 9.54 -26.73 -0.25 -3.03 16 27 C -0.17 -2.02 9.95 -26.73 -0.27 -2.29 16 28 H 0.10 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.09 1.04 7.84 -52.48 -0.41 0.63 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.04 0.51 7.52 -51.93 -0.39 0.12 16 32 H 0.09 0.95 5.76 -51.93 -0.30 0.66 16 33 H 0.11 1.97 7.20 -51.93 -0.37 1.59 16 34 H 0.06 1.09 7.55 -51.92 -0.39 0.69 16 35 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.12 2.41 7.83 -52.48 -0.41 2.00 16 39 H 0.29 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 2.05 6.57 -51.93 -0.34 1.71 16 41 H 0.09 1.03 5.95 -51.93 -0.31 0.72 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -29.38 357.64 -10.21 -39.60 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.86 Total: 5.45 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.91 Total: -4.57 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.42 Total: -48.82 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.70 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.48 Total: 17.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.38 -10.21 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772379948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.647 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds