Wall clock time and date at job start Tue Mar 31 2020 14:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99908 * 2 1 4 4 N 1.46901 * 109.46895 * 122.48230 * 3 2 1 5 5 C 1.46893 * 111.00339 * 287.34524 * 4 3 2 6 6 C 1.50703 * 109.47709 * 170.00123 * 5 4 3 7 7 N 1.29831 * 118.34297 * 0.02562 * 6 5 4 8 8 C 1.35631 * 121.62360 * 179.97438 * 7 6 5 9 9 C 1.39635 * 121.62404 * 180.02562 * 8 7 6 10 10 C 1.37714 * 119.69349 * 179.97438 * 9 8 7 11 11 C 1.38876 * 120.82740 * 0.02562 * 10 9 8 12 12 C 1.37792 * 120.57066 * 359.97438 * 11 10 9 13 13 C 1.39372 * 119.51659 * 0.02562 * 12 11 10 14 14 C 1.46965 * 121.90492 * 180.27669 * 13 12 11 15 15 O 1.21725 * 121.28478 * 359.97438 * 14 13 12 16 16 N 1.35344 * 117.42570 * 180.21155 * 14 13 12 17 17 C 1.37102 * 119.71516 * 179.76707 * 16 14 13 18 18 H 1.08000 * 119.99565 * 139.64034 * 17 16 14 19 19 C 1.39075 * 120.00401 * 319.64056 * 17 16 14 20 20 N 1.31250 * 120.00335 * 145.64106 * 19 17 16 21 21 Si 1.86802 * 119.99590 * 325.63463 * 19 17 16 22 22 H 1.48499 * 109.47440 * 275.47635 * 21 19 17 23 23 H 1.48499 * 109.47357 * 35.47672 * 21 19 17 24 24 H 1.48504 * 109.46927 * 155.48048 * 21 19 17 25 25 C 1.46900 * 111.00177 * 163.38644 * 4 3 2 26 26 C 1.53007 * 117.49566 * 7.39841 * 25 4 3 27 27 C 1.53002 * 117.49854 * 298.77751 * 25 4 3 28 28 H 1.07999 * 120.00000 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00016 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00293 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46969 * 2.48510 * 3 2 1 32 32 H 1.08995 * 109.47452 * 242.48337 * 3 2 1 33 33 H 1.08997 * 109.47569 * 49.99659 * 5 4 3 34 34 H 1.09011 * 109.46825 * 289.99962 * 5 4 3 35 35 H 1.07997 * 120.15138 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.58720 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.71552 * 180.02562 * 11 10 9 38 38 H 1.08003 * 120.24087 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00142 * 179.97438 * 20 19 17 40 40 H 1.08994 * 115.55460 * 153.11052 * 25 4 3 41 41 H 1.08998 * 117.49688 * 0.02562 * 26 25 4 42 42 H 1.08998 * 117.49532 * 145.02211 * 26 25 4 43 43 H 1.08998 * 117.50228 * 214.97684 * 27 25 4 44 44 H 1.09004 * 117.49769 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9525 1.3573 1.1683 5 6 2.1855 1.5576 2.4050 6 6 3.0898 1.3617 3.5945 7 7 4.3352 1.0643 3.3796 8 6 5.2073 0.8740 4.4007 9 6 6.5468 0.5546 4.1696 10 6 7.3981 0.3704 5.2364 11 6 6.9413 0.4979 6.5416 12 6 5.6240 0.8124 6.7956 13 6 4.7459 1.0029 5.7302 14 6 3.3323 1.3456 5.9405 15 8 2.8734 1.4761 7.0603 16 7 2.5594 1.5056 4.8410 17 6 1.2328 1.8211 4.9829 18 1 0.7742 2.5382 4.3182 19 6 0.4775 1.2177 5.9828 20 7 -0.4773 1.8909 6.5808 21 14 0.8221 -0.5513 6.4744 22 1 0.0996 -1.4695 5.5579 23 1 2.2812 -0.8136 6.3891 24 1 0.3591 -0.7770 7.8673 25 6 3.9733 2.4012 1.0070 26 6 3.8443 3.3352 -0.1981 27 6 4.9402 2.2678 -0.1713 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3560 2.1331 0.0446 32 1 2.6563 1.3825 -0.9113 33 1 1.3688 0.8370 2.4469 34 1 1.7787 2.5689 2.4204 35 1 6.9136 0.4524 3.1590 36 1 8.4337 0.1230 5.0556 37 1 7.6246 0.3500 7.3648 38 1 5.2744 0.9098 7.8128 39 1 -1.0042 1.4699 7.2779 40 1 4.3634 2.8244 1.9326 41 1 3.0017 3.1752 -0.8708 42 1 4.1494 4.3731 -0.0652 43 1 5.9662 2.6035 -0.0210 44 1 4.8185 1.4056 -0.8270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772379948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:46 Heat of formation + Delta-G solvation = 81.636128 kcal Electronic energy + Delta-G solvation = -28203.028586 eV Core-core repulsion = 24508.338442 eV Total energy + Delta-G solvation = -3694.690144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50199 -40.04933 -39.35996 -38.20465 -35.75173 -35.66895 -34.13333 -33.67794 -32.08151 -30.84563 -28.35008 -27.70892 -26.08583 -24.62106 -23.61639 -23.12156 -22.65090 -21.30100 -20.66439 -20.31915 -19.58584 -18.80440 -17.89384 -17.38049 -16.88480 -16.75147 -16.30871 -16.00317 -15.71960 -15.50878 -15.22983 -15.11108 -14.94626 -14.70210 -14.46786 -14.11983 -13.94247 -13.90014 -13.36237 -13.10140 -13.02489 -12.79583 -12.65676 -12.50772 -12.38569 -12.30845 -12.17603 -11.89753 -11.47232 -11.33170 -11.14314 -10.97008 -10.63109 -10.48911 -10.21120 -9.99202 -9.00428 -8.93324 -8.80012 -6.52723 -0.22600 -0.05117 1.05256 1.14688 1.21012 1.39637 1.40998 1.90837 2.00073 2.20214 2.62551 2.89819 3.14698 3.22618 3.26433 3.63160 3.82002 3.98955 4.10197 4.12319 4.18335 4.20401 4.27407 4.34698 4.42523 4.48377 4.53009 4.60330 4.65892 4.82165 4.86434 4.87340 5.05931 5.11062 5.13534 5.19216 5.21785 5.32343 5.37161 5.50388 5.51757 5.60737 5.79377 5.82421 5.93086 6.12008 6.16005 6.26607 6.39987 6.70161 7.24251 7.34232 8.16664 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.006635 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.383673 B = 4218.825540 C = 6404.875686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C 0.078 3.922 4 N -0.487 5.487 5 C 0.135 3.865 6 C 0.352 3.648 7 N -0.512 5.512 8 C 0.137 3.863 9 C -0.118 4.118 10 C -0.068 4.068 11 C -0.144 4.144 12 C -0.069 4.069 13 C -0.241 4.241 14 C 0.485 3.515 15 O -0.570 6.570 16 N -0.378 5.378 17 C -0.409 4.409 18 H 0.110 0.890 19 C 0.096 3.904 20 N -0.829 5.829 21 Si 0.924 3.076 22 H -0.254 1.254 23 H -0.292 1.292 24 H -0.277 1.277 25 C 0.025 3.975 26 C -0.219 4.219 27 C -0.152 4.152 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.114 0.886 39 H 0.289 0.711 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -2.590 -13.615 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.172 4.172 3 C -0.048 4.048 4 N -0.209 5.209 5 C 0.006 3.994 6 C 0.089 3.911 7 N -0.236 5.236 8 C 0.023 3.977 9 C -0.138 4.138 10 C -0.087 4.087 11 C -0.163 4.163 12 C -0.089 4.089 13 C -0.247 4.247 14 C 0.284 3.716 15 O -0.452 6.452 16 N -0.084 5.084 17 C -0.534 4.534 18 H 0.128 0.872 19 C -0.120 4.120 20 N -0.458 5.458 21 Si 0.750 3.250 22 H -0.179 1.179 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.084 4.084 26 C -0.258 4.258 27 C -0.189 4.189 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.172 0.828 36 H 0.192 0.808 37 H 0.178 0.822 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.648 -3.018 -13.433 17.405 hybrid contribution -1.306 0.319 1.868 2.302 sum 9.341 -2.699 -11.564 15.109 Atomic orbital electron populations 1.24020 0.95865 1.02552 1.00256 1.22916 0.95751 0.98543 1.00019 1.21439 0.94754 0.95044 0.93599 1.61492 1.13432 1.45525 1.00420 1.20685 0.92627 1.01401 0.84728 1.23406 0.91624 0.90163 0.85914 1.68658 1.00337 1.23954 1.30656 1.19371 0.95713 0.95774 0.86891 1.21050 0.89518 1.01877 1.01326 1.21640 1.01083 0.95015 0.91005 1.21404 0.93948 1.02065 0.98839 1.21069 0.94220 0.96304 0.97300 1.20932 0.93445 1.13115 0.97234 1.19100 0.87164 0.80413 0.84953 1.90596 1.75997 1.54575 1.24017 1.42489 1.10406 1.50100 1.05407 1.19025 0.83488 1.29163 1.21724 0.87226 1.25562 0.93658 1.00330 0.92471 1.69858 1.20538 1.36763 1.18645 0.86096 0.78228 0.82172 0.78533 1.17943 1.21782 1.20209 1.22425 0.97963 0.94572 0.93425 1.23699 1.02567 0.96669 1.02861 1.22987 0.95439 1.00256 1.00264 0.87591 0.88250 0.87134 0.93599 0.87842 0.87866 0.92251 0.82795 0.80834 0.82232 0.86816 0.90059 0.88674 0.87438 0.88756 0.88075 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.15 14.32 67.78 0.97 -3.17 16 2 C -0.15 -3.59 8.85 25.65 0.23 -3.37 16 3 C 0.08 1.81 4.07 85.56 0.35 2.16 16 4 N -0.49 -14.30 4.32 -880.05 -3.80 -18.09 16 5 C 0.13 4.87 3.91 85.56 0.33 5.20 16 6 C 0.35 15.32 7.01 137.94 0.97 16.29 16 7 N -0.51 -20.67 7.59 -179.54 -1.36 -22.03 16 8 C 0.14 5.49 6.63 39.65 0.26 5.75 16 9 C -0.12 -3.54 10.03 22.48 0.23 -3.31 16 10 C -0.07 -1.64 10.00 22.30 0.22 -1.41 16 11 C -0.14 -3.98 10.02 22.32 0.22 -3.76 16 12 C -0.07 -2.68 9.68 22.44 0.22 -2.46 16 13 C -0.24 -11.01 5.89 -19.96 -0.12 -11.12 16 14 C 0.49 26.31 5.56 86.44 0.48 26.79 16 15 O -0.57 -34.34 13.53 -4.43 -0.06 -34.40 16 16 N -0.38 -19.44 2.31 -460.24 -1.06 -20.50 16 17 C -0.41 -22.25 8.57 84.07 0.72 -21.53 16 18 H 0.11 5.92 7.18 -2.91 -0.02 5.90 16 19 C 0.10 5.40 4.38 84.98 0.37 5.78 16 20 N -0.83 -47.40 13.95 21.68 0.30 -47.10 16 21 Si 0.92 47.40 26.38 68.60 1.81 49.21 16 22 H -0.25 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -16.16 5.93 99.48 0.59 -15.57 16 24 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 25 C 0.03 0.70 5.09 44.92 0.23 0.93 16 26 C -0.22 -4.59 9.54 30.60 0.29 -4.30 16 27 C -0.15 -3.21 9.95 30.60 0.30 -2.91 16 28 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.10 2.07 7.84 -2.91 -0.02 2.05 16 30 H 0.11 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.05 1.04 7.52 -2.39 -0.02 1.02 16 32 H 0.10 2.02 5.76 -2.39 -0.01 2.01 16 33 H 0.10 3.83 7.20 -2.39 -0.02 3.81 16 34 H 0.06 2.16 7.55 -2.38 -0.02 2.14 16 35 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.11 4.55 7.83 -2.91 -0.02 4.53 16 39 H 0.29 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.10 3.15 6.57 -2.39 -0.02 3.14 16 41 H 0.11 2.00 5.95 -2.39 -0.01 1.98 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.10 1.99 7.65 -2.38 -0.02 1.97 16 Total: -1.00 -69.43 357.64 3.00 -66.42 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.90 Total: 20.96 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 6.28 Total: 5.54 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -5.92 Total: -107.72 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.06 Total: -34.40 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.81 Total: 49.21 kcal Total: -69.43 3.00 -66.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772379948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.058 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds