Wall clock time and date at job start Tue Mar 31 2020 14:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00338 * 2 1 4 4 N 1.46901 * 109.47390 * 124.06656 * 3 2 1 5 5 C 1.46897 * 111.00068 * 300.66418 * 4 3 2 6 6 C 1.50701 * 109.47142 * 288.43800 * 5 4 3 7 7 H 1.07993 * 119.99686 * 356.30355 * 6 5 4 8 8 C 1.37878 * 119.99842 * 176.30291 * 6 5 4 9 9 N 1.31509 * 119.99986 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00029 * 0.02562 * 8 6 5 11 11 H 1.48488 * 109.47391 * 90.00113 * 10 8 6 12 12 H 1.48500 * 109.46631 * 210.00110 * 10 8 6 13 13 H 1.48498 * 109.46999 * 329.99562 * 10 8 6 14 14 C 1.46897 * 110.99549 * 64.61766 * 4 3 2 15 15 N 1.46503 * 109.47248 * 81.04768 * 14 4 3 16 16 N 1.28383 * 119.10889 * 285.25313 * 15 14 4 17 17 C 1.31212 * 122.29796 * 180.27680 * 16 15 14 18 18 C 1.48358 * 119.87466 * 179.74491 * 17 16 15 19 19 C 1.39362 * 120.12484 * 179.44615 * 18 17 16 20 20 C 1.38007 * 119.87538 * 179.77188 * 19 18 17 21 21 C 1.38321 * 120.12387 * 0.50541 * 20 19 18 22 22 C 1.38327 * 120.25011 * 359.75122 * 21 20 19 23 23 C 1.38017 * 120.12146 * 359.97438 * 22 21 20 24 24 C 1.41447 * 120.25181 * 359.47104 * 17 16 15 25 25 C 1.36360 * 118.24205 * 0.25190 * 24 17 16 26 26 C 1.34615 * 119.10839 * 105.00032 * 15 14 4 27 27 O 1.22048 * 120.24785 * 359.97438 * 26 15 14 28 28 H 1.07998 * 120.00383 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99878 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.46842 * 4.07077 * 3 2 1 32 32 H 1.08999 * 109.47372 * 244.06771 * 3 2 1 33 33 H 1.09003 * 109.47234 * 48.44279 * 5 4 3 34 34 H 1.09006 * 109.46992 * 168.43770 * 5 4 3 35 35 H 0.97003 * 120.00123 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47452 * 321.04285 * 14 4 3 37 37 H 1.09004 * 109.47213 * 201.04523 * 14 4 3 38 38 H 1.07998 * 120.05623 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.94187 * 180.27917 * 20 19 18 40 40 H 1.08001 * 119.87870 * 179.76901 * 21 20 19 41 41 H 1.07996 * 119.94220 * 180.02562 * 22 21 20 42 42 H 1.07991 * 120.06066 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.87809 * 180.27757 * 24 17 16 44 44 H 1.08007 * 121.03920 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9802 1.3412 1.1473 5 6 2.2459 1.2064 2.4124 6 6 1.4741 2.4723 2.6825 7 1 1.5708 3.3163 2.0157 8 6 0.6446 2.5529 3.7809 9 7 -0.0293 3.6573 4.0164 10 14 0.4780 1.0931 4.9345 11 1 1.4984 1.1921 6.0087 12 1 -0.8785 1.0923 5.5389 13 1 0.6812 -0.1654 4.1729 14 6 4.0155 0.3060 1.0266 15 7 5.0755 0.7773 0.1319 16 7 4.8580 0.8066 -1.1330 17 6 5.7642 1.2119 -1.9911 18 6 5.4570 1.2183 -3.4425 19 6 6.4115 1.6586 -4.3575 20 6 6.1220 1.6579 -5.7068 21 6 4.8835 1.2312 -6.1509 22 6 3.9303 0.7981 -5.2468 23 6 4.2109 0.7892 -3.8955 24 6 7.0307 1.6482 -1.5370 25 6 7.2773 1.6288 -0.1961 26 6 6.2494 1.1729 0.6588 27 8 6.4242 1.1382 1.8662 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3574 2.1323 0.0730 32 1 2.6344 1.3950 -0.9242 33 1 1.5542 0.3668 2.3434 34 1 2.9510 1.0304 3.2248 35 1 -0.6132 3.7139 4.7889 36 1 3.5741 -0.6037 0.6195 37 1 4.4365 0.0968 2.0101 38 1 7.3774 1.9958 -4.0115 39 1 6.8625 1.9946 -6.4172 40 1 4.6598 1.2358 -7.2075 41 1 2.9651 0.4656 -5.5990 42 1 3.4662 0.4505 -3.1906 43 1 7.7825 1.9881 -2.2340 44 1 8.2286 1.9524 0.2000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:47 Heat of formation + Delta-G solvation = 101.051612 kcal Electronic energy + Delta-G solvation = -27167.417606 eV Core-core repulsion = 23473.569380 eV Total energy + Delta-G solvation = -3693.848226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92286 -39.32899 -37.64895 -37.47712 -34.71733 -32.84935 -32.20272 -32.09125 -31.13149 -29.98865 -28.07472 -26.76070 -24.83989 -24.49511 -23.35568 -22.18012 -21.83344 -20.98710 -19.25121 -18.18526 -17.73935 -16.89259 -16.58094 -16.56356 -16.27691 -15.44754 -15.09718 -14.81928 -14.55874 -14.41729 -14.10737 -13.96608 -13.62999 -13.60904 -13.44935 -13.03525 -12.78580 -12.57739 -12.36839 -11.99975 -11.70896 -11.53280 -11.37194 -11.16010 -10.99228 -10.95109 -10.78205 -10.54953 -10.35709 -10.03114 -9.59617 -9.39469 -9.35132 -9.13591 -8.88460 -8.57994 -8.04498 -7.62304 -6.06646 -4.04200 0.47391 0.82404 1.22311 1.99685 2.34147 2.72003 3.28308 3.34954 3.36206 3.39538 3.80765 3.92831 4.38702 4.40437 4.52249 4.65642 4.74328 4.79291 4.87766 4.96622 5.22685 5.24790 5.25790 5.36444 5.37745 5.50863 5.58398 5.64107 5.68876 5.76768 5.80643 5.92805 6.01765 6.04766 6.26864 6.29366 6.35367 6.39976 6.55519 6.69810 6.75844 6.86926 7.03426 7.18608 7.48021 7.66706 7.80491 7.82606 8.28881 8.59439 9.01427 9.54055 11.06365 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003626 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.132510 B = 7720.101337 C = 8922.297182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.187 4.187 3 C 0.087 3.913 4 N -0.527 5.527 5 C 0.165 3.835 6 C -0.505 4.505 7 H 0.080 0.920 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.264 3.736 15 N -0.321 5.321 16 N -0.193 5.193 17 C 0.075 3.925 18 C -0.020 4.020 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.062 4.062 25 C -0.187 4.187 26 C 0.480 3.520 27 O -0.525 6.525 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.007 0.993 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 -7.925 -20.453 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.206 4.206 3 C -0.041 4.041 4 N -0.250 5.250 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.054 3.946 15 N -0.142 5.142 16 N -0.018 5.018 17 C -0.092 4.092 18 C -0.022 4.022 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.107 4.107 24 C -0.085 4.085 25 C -0.217 4.217 26 C 0.278 3.722 27 O -0.403 6.403 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.025 0.975 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.431 -7.737 -19.361 23.778 hybrid contribution 0.225 -1.068 0.838 1.376 sum 11.656 -8.806 -18.523 23.590 Atomic orbital electron populations 1.23799 0.95981 1.01526 0.99809 1.23482 0.96777 0.99450 1.00908 1.21403 0.94685 0.94860 0.93150 1.61802 1.13892 1.44480 1.04876 1.20264 0.92631 0.98280 0.84849 1.20891 1.23896 0.98644 1.10879 0.90220 1.24838 0.95254 0.95640 0.97280 1.69881 1.28776 1.26351 1.28708 0.86928 0.77693 0.83828 0.81774 1.20083 1.21128 1.19124 1.22540 0.85871 0.92571 0.93571 1.47088 1.14610 1.49999 1.02544 1.70859 1.28620 1.10435 0.91882 1.20056 0.91289 1.04952 0.92926 1.18086 0.94933 1.00840 0.88314 1.21122 0.98861 0.99714 0.92874 1.21018 0.97172 1.00434 0.95221 1.21249 0.93767 0.98796 0.99727 1.21154 0.99597 0.99932 0.93033 1.21333 0.95983 0.97525 0.95893 1.22240 0.96346 0.93677 0.96282 1.22669 1.00944 1.04806 0.93247 1.18048 0.83450 0.80617 0.90111 1.90993 1.80500 1.54626 1.14131 0.89471 0.87995 0.88594 0.89017 0.90512 0.97550 0.95670 0.92623 0.90981 0.86433 0.85598 0.85769 0.86057 0.85704 0.84804 0.83352 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 14.32 29.02 0.42 -2.40 16 2 C -0.19 -3.11 7.40 -36.03 -0.27 -3.37 16 3 C 0.09 1.62 5.60 -4.98 -0.03 1.59 16 4 N -0.53 -11.05 4.76 -241.43 -1.15 -12.20 16 5 C 0.17 3.97 3.65 -4.98 -0.02 3.95 16 6 C -0.50 -14.28 9.10 -34.44 -0.31 -14.60 16 7 H 0.08 2.49 7.84 -52.49 -0.41 2.07 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 10 Si 0.87 21.52 27.54 -169.99 -4.68 16.84 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.28 6.44 56.52 0.36 -5.92 16 14 C 0.26 4.75 5.56 -63.31 -0.35 4.40 16 15 N -0.32 -5.39 3.45 -66.34 -0.23 -5.61 16 16 N -0.19 -2.84 8.23 33.47 0.28 -2.56 16 17 C 0.08 0.92 6.82 -82.75 -0.56 0.36 16 18 C -0.02 -0.21 5.88 -104.90 -0.62 -0.83 16 19 C -0.11 -0.87 9.43 -39.25 -0.37 -1.24 16 20 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 21 C -0.12 -0.89 10.04 -39.52 -0.40 -1.28 16 22 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16 23 C -0.09 -0.93 9.58 -39.25 -0.38 -1.30 16 24 C -0.06 -0.64 9.50 -39.04 -0.37 -1.01 16 25 C -0.19 -2.36 10.12 -39.11 -0.40 -2.76 16 26 C 0.48 8.28 7.47 -15.19 -0.11 8.17 16 27 O -0.53 -10.92 16.44 4.87 0.08 -10.84 16 28 H 0.09 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.10 1.75 7.84 -52.49 -0.41 1.34 16 30 H 0.10 1.46 6.69 -52.49 -0.35 1.10 16 31 H 0.09 1.93 6.99 -51.93 -0.36 1.57 16 32 H 0.08 1.32 6.39 -51.93 -0.33 0.99 16 33 H 0.01 0.16 5.50 -51.93 -0.29 -0.12 16 34 H 0.03 0.62 7.26 -51.93 -0.38 0.25 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.07 1.14 6.03 -51.93 -0.31 0.83 16 37 H 0.12 2.22 6.38 -51.93 -0.33 1.89 16 38 H 0.13 0.73 6.22 -52.49 -0.33 0.40 16 39 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.50 7.55 -52.49 -0.40 1.10 16 43 H 0.15 0.93 6.29 -52.48 -0.33 0.60 16 44 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -33.81 364.58 -9.61 -43.42 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.52 Total: 3.27 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.66 Total: -11.08 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.33 Total: -47.10 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.68 Total: 16.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.81 -9.61 -43.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.472 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds