Wall clock time and date at job start Tue Mar 31 2020 14:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00338 * 2 1 4 4 N 1.46901 * 109.47390 * 124.06656 * 3 2 1 5 5 C 1.46897 * 111.00068 * 300.66418 * 4 3 2 6 6 C 1.50701 * 109.47142 * 288.43800 * 5 4 3 7 7 H 1.07993 * 119.99686 * 356.30355 * 6 5 4 8 8 C 1.37878 * 119.99842 * 176.30291 * 6 5 4 9 9 N 1.31509 * 119.99986 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00029 * 0.02562 * 8 6 5 11 11 H 1.48488 * 109.47391 * 90.00113 * 10 8 6 12 12 H 1.48500 * 109.46631 * 210.00110 * 10 8 6 13 13 H 1.48498 * 109.46999 * 329.99562 * 10 8 6 14 14 C 1.46897 * 110.99549 * 64.61766 * 4 3 2 15 15 N 1.46503 * 109.47248 * 81.04768 * 14 4 3 16 16 N 1.28383 * 119.10889 * 285.25313 * 15 14 4 17 17 C 1.31212 * 122.29796 * 180.27680 * 16 15 14 18 18 C 1.48358 * 119.87466 * 179.74491 * 17 16 15 19 19 C 1.39362 * 120.12484 * 179.44615 * 18 17 16 20 20 C 1.38007 * 119.87538 * 179.77188 * 19 18 17 21 21 C 1.38321 * 120.12387 * 0.50541 * 20 19 18 22 22 C 1.38327 * 120.25011 * 359.75122 * 21 20 19 23 23 C 1.38017 * 120.12146 * 359.97438 * 22 21 20 24 24 C 1.41447 * 120.25181 * 359.47104 * 17 16 15 25 25 C 1.36360 * 118.24205 * 0.25190 * 24 17 16 26 26 C 1.34615 * 119.10839 * 105.00032 * 15 14 4 27 27 O 1.22048 * 120.24785 * 359.97438 * 26 15 14 28 28 H 1.07998 * 120.00383 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99878 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.46842 * 4.07077 * 3 2 1 32 32 H 1.08999 * 109.47372 * 244.06771 * 3 2 1 33 33 H 1.09003 * 109.47234 * 48.44279 * 5 4 3 34 34 H 1.09006 * 109.46992 * 168.43770 * 5 4 3 35 35 H 0.97003 * 120.00123 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47452 * 321.04285 * 14 4 3 37 37 H 1.09004 * 109.47213 * 201.04523 * 14 4 3 38 38 H 1.07998 * 120.05623 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.94187 * 180.27917 * 20 19 18 40 40 H 1.08001 * 119.87870 * 179.76901 * 21 20 19 41 41 H 1.07996 * 119.94220 * 180.02562 * 22 21 20 42 42 H 1.07991 * 120.06066 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.87809 * 180.27757 * 24 17 16 44 44 H 1.08007 * 121.03920 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9802 1.3412 1.1473 5 6 2.2459 1.2064 2.4124 6 6 1.4741 2.4723 2.6825 7 1 1.5708 3.3163 2.0157 8 6 0.6446 2.5529 3.7809 9 7 -0.0293 3.6573 4.0164 10 14 0.4780 1.0931 4.9345 11 1 1.4984 1.1921 6.0087 12 1 -0.8785 1.0923 5.5389 13 1 0.6812 -0.1654 4.1729 14 6 4.0155 0.3060 1.0266 15 7 5.0755 0.7773 0.1319 16 7 4.8580 0.8066 -1.1330 17 6 5.7642 1.2119 -1.9911 18 6 5.4570 1.2183 -3.4425 19 6 6.4115 1.6586 -4.3575 20 6 6.1220 1.6579 -5.7068 21 6 4.8835 1.2312 -6.1509 22 6 3.9303 0.7981 -5.2468 23 6 4.2109 0.7892 -3.8955 24 6 7.0307 1.6482 -1.5370 25 6 7.2773 1.6288 -0.1961 26 6 6.2494 1.1729 0.6588 27 8 6.4242 1.1382 1.8662 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3574 2.1323 0.0730 32 1 2.6344 1.3950 -0.9242 33 1 1.5542 0.3668 2.3434 34 1 2.9510 1.0304 3.2248 35 1 -0.6132 3.7139 4.7889 36 1 3.5741 -0.6037 0.6195 37 1 4.4365 0.0968 2.0101 38 1 7.3774 1.9958 -4.0115 39 1 6.8625 1.9946 -6.4172 40 1 4.6598 1.2358 -7.2075 41 1 2.9651 0.4656 -5.5990 42 1 3.4662 0.4505 -3.1906 43 1 7.7825 1.9881 -2.2340 44 1 8.2286 1.9524 0.2000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:46 Heat of formation + Delta-G solvation = 79.083476 kcal Electronic energy + Delta-G solvation = -27168.370216 eV Core-core repulsion = 23473.569380 eV Total energy + Delta-G solvation = -3694.800836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.06315 -40.08688 -39.18189 -38.67220 -35.82974 -34.83518 -33.67920 -33.12177 -31.82254 -31.08749 -29.87267 -28.04774 -26.17777 -25.65860 -24.64985 -22.99115 -22.76712 -22.61091 -20.68852 -19.22049 -19.01366 -18.64377 -17.80360 -17.66056 -17.42426 -16.91858 -16.17383 -16.06203 -15.96363 -15.58225 -15.47857 -15.17254 -14.65475 -14.62411 -14.48681 -14.31705 -14.17143 -13.83602 -13.67951 -13.38770 -13.18434 -12.93012 -12.58125 -12.56639 -12.33067 -12.28355 -12.03845 -11.92681 -11.83357 -11.66487 -11.55065 -10.82065 -10.74629 -10.27184 -10.22719 -9.77005 -9.31288 -9.01851 -8.31297 -6.34606 -0.49079 -0.03456 0.58939 1.04171 1.15734 1.31672 1.33325 1.37292 1.42950 2.30866 2.36287 2.92514 3.02369 3.04434 3.16588 3.46523 3.71619 3.81884 3.91274 3.99938 4.11601 4.20161 4.21696 4.26203 4.36593 4.47702 4.54151 4.62965 4.67210 4.71479 4.79034 4.89140 4.94315 4.96408 5.00341 5.10616 5.20454 5.25587 5.46554 5.62804 5.65752 5.67258 5.70394 5.71455 5.94538 6.13349 6.14383 6.44856 6.56427 6.69061 7.18395 7.27805 8.85452 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003626 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.132510 B = 7720.101337 C = 8922.297182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.192 4.192 3 C 0.096 3.904 4 N -0.549 5.549 5 C 0.180 3.820 6 C -0.510 4.510 7 H 0.031 0.969 8 C 0.014 3.986 9 N -0.945 5.945 10 Si 0.940 3.060 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.244 1.244 14 C 0.273 3.727 15 N -0.332 5.332 16 N -0.227 5.227 17 C 0.092 3.908 18 C -0.047 4.047 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.039 4.039 25 C -0.195 4.195 26 C 0.461 3.539 27 O -0.581 6.581 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.116 0.884 43 H 0.202 0.798 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 -9.599 -23.397 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.211 4.211 3 C -0.031 4.031 4 N -0.273 5.273 5 C 0.053 3.947 6 C -0.548 4.548 7 H 0.050 0.950 8 C -0.184 4.184 9 N -0.586 5.586 10 Si 0.764 3.236 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.167 1.167 14 C 0.062 3.938 15 N -0.151 5.151 16 N -0.051 5.051 17 C -0.076 4.076 18 C -0.049 4.049 19 C -0.118 4.118 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.125 4.125 24 C -0.062 4.062 25 C -0.224 4.224 26 C 0.261 3.739 27 O -0.463 6.463 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.174 0.826 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.219 0.781 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 13.375 -9.424 -22.366 27.712 hybrid contribution -0.328 -0.423 1.386 1.486 sum 13.048 -9.847 -20.980 26.596 Atomic orbital electron populations 1.23944 0.95921 1.02109 0.98791 1.23443 0.96936 0.99012 1.01738 1.21230 0.94058 0.95003 0.92858 1.61603 1.14703 1.46825 1.04196 1.19929 0.92284 0.96079 0.86396 1.21059 1.24555 0.99068 1.10115 0.95019 1.25750 0.94739 0.98823 0.99092 1.70037 1.29923 1.28910 1.29739 0.85815 0.77891 0.80594 0.79338 1.19673 1.20325 1.16739 1.22340 0.85215 0.92433 0.93783 1.46820 1.14066 1.50979 1.03256 1.70881 1.30007 1.13169 0.91020 1.20731 0.91503 1.01783 0.93616 1.18197 0.95952 1.03281 0.87520 1.21482 0.99297 0.98153 0.92873 1.21444 0.97610 0.99366 0.95442 1.21644 0.93532 0.97051 1.00823 1.21355 1.00720 1.00307 0.92514 1.21358 0.96090 0.98451 0.96627 1.22720 0.96269 0.91113 0.96059 1.22843 1.00686 1.05208 0.93629 1.18833 0.84427 0.80430 0.90197 1.90949 1.81527 1.57582 1.16259 0.86491 0.89806 0.86335 0.92661 0.89273 0.96583 0.96291 0.92375 0.88806 0.87980 0.82578 0.82638 0.83581 0.84647 0.86563 0.78116 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.43 14.32 67.78 0.97 -4.46 16 2 C -0.19 -6.36 7.40 25.65 0.19 -6.17 16 3 C 0.10 3.74 5.60 85.56 0.48 4.22 16 4 N -0.55 -24.07 4.76 -917.73 -4.37 -28.44 16 5 C 0.18 8.89 3.65 85.56 0.31 9.20 16 6 C -0.51 -30.35 9.10 25.60 0.23 -30.12 16 7 H 0.03 2.13 7.84 -2.91 -0.02 2.11 16 8 C 0.01 0.81 5.47 84.66 0.46 1.27 16 9 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 10 Si 0.94 44.91 27.54 68.60 1.89 46.80 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.24 -10.68 6.44 99.48 0.64 -10.04 16 14 C 0.27 10.10 5.56 170.81 0.95 11.05 16 15 N -0.33 -11.41 3.45 -481.96 -1.66 -13.07 16 16 N -0.23 -6.69 8.23 -48.02 -0.40 -7.09 16 17 C 0.09 2.10 6.82 42.72 0.29 2.39 16 18 C -0.05 -0.89 5.88 -20.04 -0.12 -1.01 16 19 C -0.10 -1.19 9.43 22.49 0.21 -0.98 16 20 C -0.12 -1.21 10.03 22.23 0.22 -0.98 16 21 C -0.11 -1.29 10.04 22.31 0.22 -1.07 16 22 C -0.13 -2.04 10.03 22.24 0.22 -1.82 16 23 C -0.11 -2.13 9.58 22.49 0.22 -1.91 16 24 C -0.04 -0.68 9.50 22.62 0.21 -0.47 16 25 C -0.19 -4.64 10.12 22.57 0.23 -4.41 16 26 C 0.46 16.28 7.47 85.01 0.64 16.91 16 27 O -0.58 -25.39 16.44 -5.47 -0.09 -25.48 16 28 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.08 2.97 7.84 -2.91 -0.02 2.95 16 30 H 0.12 3.42 6.69 -2.91 -0.02 3.40 16 31 H 0.05 2.52 6.99 -2.38 -0.02 2.51 16 32 H 0.09 3.21 6.39 -2.39 -0.02 3.20 16 33 H 0.02 0.78 5.50 -2.39 -0.01 0.76 16 34 H 0.02 0.96 7.26 -2.38 -0.02 0.95 16 35 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 36 H 0.09 2.97 6.03 -2.39 -0.01 2.96 16 37 H 0.10 4.06 6.38 -2.38 -0.02 4.05 16 38 H 0.16 0.84 6.22 -2.91 -0.02 0.82 16 39 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.12 2.67 7.55 -2.92 -0.02 2.65 16 43 H 0.20 1.32 6.29 -2.91 -0.02 1.30 16 44 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -80.06 364.58 2.57 -77.49 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.95 Total: 18.03 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.95 Total: -8.35 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -6.13 Total: -108.50 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.09 Total: -25.48 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.89 Total: 46.80 kcal Total: -80.06 2.57 -77.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.574 kcal (2) G-P(sol) polarization free energy of solvation -80.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds