Wall clock time and date at job start Tue Mar 31 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.38932 * 2 1 4 4 C 1.53021 * 109.42875 * 240.12697 * 2 1 3 5 5 C 1.53369 * 109.75341 * 168.21841 * 4 2 1 6 6 C 1.50943 * 108.20683 * 50.66766 * 5 4 2 7 7 N 1.30128 * 128.28798 * 163.23610 * 6 5 4 8 8 N 1.40323 * 108.12091 * 180.11031 * 7 6 5 9 9 H 0.96999 * 126.00118 * 179.97438 * 8 7 6 10 10 C 1.35196 * 107.99096 * 359.97438 * 8 7 6 11 11 C 1.34563 * 107.61962 * 359.93916 * 10 8 7 12 12 C 1.50884 * 128.32904 * 180.14281 * 11 10 8 13 13 H 1.09001 * 109.75530 * 43.62199 * 12 11 10 14 14 C 1.50707 * 109.71738 * 282.99498 * 12 11 10 15 15 O 1.21278 * 119.99832 * 335.62577 * 14 12 11 16 16 N 1.34775 * 119.99926 * 155.62187 * 14 12 11 17 17 C 1.39238 * 119.99796 * 176.09998 * 16 14 12 18 18 C 1.39488 * 119.83050 * 215.18745 * 17 16 14 19 19 C 1.36372 * 120.16375 * 179.71753 * 18 17 16 20 20 C 1.40867 * 119.83091 * 0.55515 * 19 18 17 21 21 C 1.41153 * 120.16484 * 179.74396 * 20 19 18 22 22 H 1.07998 * 120.00379 * 213.82254 * 21 20 19 23 23 C 1.39908 * 120.00238 * 33.82272 * 21 20 19 24 24 N 1.30875 * 119.99706 * 5.84596 * 23 21 20 25 25 Si 1.86795 * 120.00182 * 185.84680 * 23 21 20 26 26 H 1.48498 * 109.47126 * 90.00254 * 25 23 21 27 27 H 1.48498 * 109.46976 * 209.99907 * 25 23 21 28 28 H 1.48496 * 109.47252 * 330.00090 * 25 23 21 29 29 C 1.40869 * 119.67354 * 359.71635 * 20 19 18 30 30 C 1.36375 * 119.82665 * 0.02562 * 29 20 19 31 31 H 1.09000 * 109.47318 * 294.88781 * 1 2 3 32 32 H 1.08999 * 109.47079 * 54.88500 * 1 2 3 33 33 H 1.08997 * 109.47596 * 174.88760 * 1 2 3 34 34 H 1.09004 * 109.42647 * 288.30960 * 4 2 1 35 35 H 1.09003 * 109.42407 * 48.13362 * 4 2 1 36 36 H 1.09004 * 109.71260 * 170.34258 * 5 4 2 37 37 H 1.08999 * 109.71779 * 290.93927 * 5 4 2 38 38 H 1.08000 * 126.18815 * 179.97438 * 10 8 7 39 39 H 0.96999 * 119.99967 * 355.81977 * 16 14 12 40 40 H 1.08001 * 119.91453 * 359.97436 * 18 17 16 41 41 H 1.08005 * 120.08353 * 180.27562 * 19 18 17 42 42 H 0.96999 * 119.99826 * 179.97438 * 24 23 21 43 43 H 1.07997 * 120.08541 * 180.02562 * 29 20 19 44 44 H 1.08000 * 119.91661 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0281 0.0000 4 6 2.0390 -0.7188 -1.2513 5 6 3.5439 -0.4726 -1.4144 6 6 4.2193 -0.7948 -0.1036 7 7 5.4826 -1.0121 0.1206 8 7 5.6442 -1.2744 1.4896 9 1 6.4818 -1.4712 1.9374 10 6 4.4273 -1.2048 2.0745 11 6 3.5308 -0.9088 1.1157 12 6 2.0404 -0.7189 1.2546 13 1 1.8265 -0.1164 2.1375 14 6 1.3662 -2.0609 1.3795 15 8 1.9028 -3.0529 0.9337 16 7 0.1670 -2.1587 1.9868 17 6 -0.4933 -3.3837 2.0307 18 6 -1.8850 -3.4253 1.9464 19 6 -2.5383 -4.6218 1.9829 20 6 -1.8048 -5.8168 2.1178 21 6 -2.4742 -7.0588 2.1618 22 1 -2.0830 -7.8619 2.7687 23 6 -3.6444 -7.2495 1.4191 24 7 -4.0560 -6.3188 0.5961 25 14 -4.6193 -8.8323 1.6022 26 1 -5.6265 -8.6712 2.6815 27 1 -5.3090 -9.1395 0.3234 28 1 -3.6976 -9.9443 1.9471 29 6 -0.3999 -5.7664 2.2080 30 6 0.2398 -4.5628 2.1648 31 1 -0.3634 0.4325 0.9322 32 1 -0.3633 0.5911 -0.8406 33 1 -0.3634 -1.0235 -0.0916 34 1 1.8550 -1.7888 -1.1549 35 1 1.5125 -0.3389 -2.1270 36 1 3.9389 -1.1170 -2.1998 37 1 3.7199 0.5717 -1.6726 38 1 4.2136 -1.3582 3.1220 39 1 -0.2342 -1.3765 2.3968 40 1 -2.4463 -2.5078 1.8478 41 1 -3.6156 -4.6527 1.9131 42 1 -4.8672 -6.4512 0.0809 43 1 0.1691 -6.6785 2.3112 44 1 1.3169 -4.5224 2.2334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878072686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:19 Heat of formation + Delta-G solvation = 49.032922 kcal Electronic energy + Delta-G solvation = -27327.990559 eV Core-core repulsion = 23631.886633 eV Total energy + Delta-G solvation = -3696.103925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.64339 -39.71875 -37.57745 -36.41004 -34.38190 -33.06984 -32.44355 -31.05920 -29.73747 -29.52944 -28.80796 -26.72387 -24.93800 -23.86385 -22.15742 -21.29819 -20.80099 -20.56771 -19.80160 -18.63660 -17.77802 -17.28405 -16.31641 -16.23006 -15.61289 -15.16898 -14.86105 -14.57528 -14.11804 -13.91413 -13.75191 -13.53417 -13.24724 -12.88957 -12.67686 -12.62420 -12.54322 -12.06856 -12.02792 -11.73144 -11.59889 -11.32303 -11.16267 -11.13049 -10.97290 -10.85860 -10.70169 -10.68978 -10.23940 -9.92134 -9.46569 -9.36656 -9.33991 -9.08136 -8.83314 -8.40545 -7.52669 -6.85126 -6.63884 -4.30329 1.89851 2.59292 2.72060 2.83189 3.06207 3.09614 3.11248 3.14526 3.39750 3.91718 3.99399 4.35238 4.67413 4.70600 4.76739 4.82590 5.07589 5.15862 5.34039 5.41421 5.42816 5.53310 5.56516 5.69554 5.77129 5.78104 5.88654 5.91198 6.07619 6.15787 6.20909 6.29383 6.43042 6.48802 6.62565 6.79693 6.96744 7.09193 7.23458 7.26151 7.31850 7.63715 7.67184 7.76703 7.91556 8.07638 8.31731 8.33818 8.63725 8.84903 8.93633 9.03753 10.30598 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002923 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.528924 B = 9577.400862 C =10037.475881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.073 4.073 3 H 0.080 0.920 4 C -0.120 4.120 5 C -0.036 4.036 6 C 0.097 3.903 7 N -0.295 5.295 8 N -0.486 5.486 9 H 0.438 0.562 10 C 0.072 3.928 11 C -0.210 4.210 12 C -0.023 4.023 13 H 0.092 0.908 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.654 5.654 17 C 0.006 3.994 18 C -0.119 4.119 19 C -0.140 4.140 20 C 0.105 3.895 21 C -0.465 4.465 22 H 0.076 0.924 23 C 0.072 3.928 24 N -0.809 5.809 25 Si 0.912 3.088 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.264 1.264 29 C -0.208 4.208 30 C -0.083 4.083 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.173 0.827 39 H 0.393 0.607 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.278 0.722 43 H 0.094 0.906 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.733 14.958 1.135 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.092 4.092 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.076 4.076 6 C -0.072 4.072 7 N -0.117 5.117 8 N -0.193 5.193 9 H 0.281 0.719 10 C -0.074 4.074 11 C -0.222 4.222 12 C -0.046 4.046 13 H 0.110 0.890 14 C 0.294 3.706 15 O -0.396 6.396 16 N -0.297 5.297 17 C -0.086 4.086 18 C -0.140 4.140 19 C -0.160 4.160 20 C 0.103 3.897 21 C -0.496 4.496 22 H 0.094 0.906 23 C -0.144 4.144 24 N -0.436 5.436 25 Si 0.737 3.263 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.188 1.188 29 C -0.228 4.228 30 C -0.103 4.103 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.190 0.810 39 H 0.227 0.773 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.100 14.217 0.115 18.038 hybrid contribution -1.039 -0.491 0.918 1.471 sum 10.061 13.727 1.033 17.051 Atomic orbital electron populations 1.22029 0.94316 1.03380 1.01878 1.21036 0.95955 0.99079 0.93165 0.90142 1.21721 0.93876 1.02735 0.97440 1.20107 0.94326 1.01798 0.91326 1.22261 0.90480 0.97953 0.96457 1.76964 1.18428 1.23567 0.92720 1.46214 1.08437 1.58408 1.06277 0.71899 1.21984 0.85567 1.00523 0.99375 1.19410 0.94892 1.15135 0.92773 1.19743 0.90274 0.94665 0.99935 0.89017 1.20416 0.81538 0.90486 0.78175 1.90681 1.63717 1.37986 1.47202 1.43136 1.20066 1.10905 1.55590 1.17224 0.90939 0.84188 1.16255 1.20262 0.91934 0.97574 1.04184 1.20921 0.99808 0.90726 1.04551 1.17670 0.90643 0.93260 0.88159 1.19499 1.06667 0.98535 1.24854 0.90633 1.25853 0.96776 0.98128 0.93604 1.69791 1.21057 1.33476 1.19256 0.86255 0.79823 0.81908 0.78332 1.19488 1.20373 1.18771 1.20778 0.94481 0.95709 1.11819 1.20378 0.98367 0.91717 0.99874 0.92430 0.92183 0.91265 0.90143 0.90803 0.89969 0.90014 0.80957 0.77294 0.89134 0.86174 0.91119 0.88786 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.07 37.16 0.30 -1.38 16 2 C -0.07 -0.79 2.43 -90.43 -0.22 -1.01 16 3 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 4 C -0.12 -1.43 5.14 -26.53 -0.14 -1.57 16 5 C -0.04 -0.42 6.31 -27.57 -0.17 -0.59 16 6 C 0.10 1.35 7.10 -82.35 -0.58 0.76 16 7 N -0.29 -4.20 12.68 33.75 0.43 -3.77 16 8 N -0.49 -5.55 7.37 30.35 0.22 -5.32 16 9 H 0.44 3.42 8.96 -182.43 -1.64 1.79 16 10 C 0.07 0.83 11.95 -17.37 -0.21 0.63 16 11 C -0.21 -2.80 4.54 -104.98 -0.48 -3.27 16 12 C -0.02 -0.29 2.68 -92.65 -0.25 -0.54 16 13 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.51 8.43 5.15 -10.98 -0.06 8.37 16 15 O -0.52 -11.03 12.90 5.56 0.07 -10.96 16 16 N -0.65 -10.83 4.12 -9.74 -0.04 -10.87 16 17 C 0.01 0.13 6.30 -83.57 -0.53 -0.39 16 18 C -0.12 -2.65 9.90 -39.79 -0.39 -3.04 16 19 C -0.14 -3.55 8.57 -39.26 -0.34 -3.89 16 20 C 0.11 2.81 5.51 -106.80 -0.59 2.22 16 21 C -0.46 -12.44 9.03 -37.85 -0.34 -12.78 16 22 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 23 C 0.07 1.82 5.31 -17.33 -0.09 1.73 16 24 N -0.81 -21.12 10.94 55.55 0.61 -20.52 16 25 Si 0.91 19.00 29.56 -169.99 -5.03 13.98 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 29 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 30 C -0.08 -1.98 8.61 -39.79 -0.34 -2.32 16 31 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.95 6.71 -51.93 -0.35 0.61 16 34 H 0.08 1.26 6.68 -51.93 -0.35 0.92 16 35 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.39 5.10 8.37 -40.82 -0.34 4.76 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.12 3.14 6.43 -52.48 -0.34 2.80 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 44 H 0.11 2.49 6.25 -52.49 -0.33 2.16 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -32.74 355.66 -10.28 -43.02 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.10 Total: 11.83 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -4.81 Total: -22.75 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 1.22 Total: -40.48 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.74 -10.28 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878072686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.052 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds