Wall clock time and date at job start Tue Mar 31 2020 15:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 N 1.46899 * 109.46754 * 240.00212 * 2 1 3 5 5 C 1.46901 * 111.00112 * 85.00213 * 4 2 1 6 6 C 1.53000 * 109.47491 * 179.97438 * 5 4 2 7 7 C 1.53004 * 112.84555 * 48.80611 * 6 5 4 8 8 C 1.53778 * 113.61695 * 277.50065 * 6 5 4 9 9 C 1.53777 * 87.08061 * 220.01556 * 8 6 5 10 10 F 1.39898 * 113.61446 * 270.88268 * 9 8 6 11 11 F 1.39908 * 113.69136 * 139.99225 * 9 8 6 12 12 C 1.53775 * 113.61588 * 179.97438 * 6 5 4 13 13 C 1.50696 * 109.46943 * 120.00198 * 2 1 3 14 14 C 1.38312 * 119.92731 * 79.72902 * 13 2 1 15 15 C 1.38101 * 120.06280 * 179.72519 * 14 13 2 16 16 C 1.38880 * 119.93625 * 0.54348 * 15 14 13 17 17 O 1.35745 * 120.07194 * 179.74764 * 16 15 14 18 18 C 1.34835 * 116.99957 * 174.43973 * 17 16 15 19 19 H 1.07997 * 119.99654 * 5.05911 * 18 17 16 20 20 C 1.38650 * 119.99915 * 185.05803 * 18 17 16 21 21 N 1.31554 * 120.00212 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46937 * 59.99716 * 22 20 18 24 24 H 1.48494 * 109.47498 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47050 * 300.00294 * 22 20 18 26 26 C 1.38885 * 119.85700 * 359.72839 * 16 15 14 27 27 C 1.38103 * 119.93289 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47355 * 300.00039 * 1 2 3 29 29 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47477 * 59.99845 * 1 2 3 31 31 H 1.00907 * 110.99652 * 208.95133 * 4 2 1 32 32 H 1.08998 * 109.47086 * 300.00007 * 5 4 2 33 33 H 1.09009 * 109.47111 * 59.99565 * 5 4 2 34 34 H 1.09000 * 109.47197 * 69.66543 * 7 6 5 35 35 H 1.09002 * 109.46801 * 189.66840 * 7 6 5 36 36 H 1.09007 * 109.46895 * 309.66639 * 7 6 5 37 37 H 1.09001 * 113.61344 * 334.56622 * 8 6 5 38 38 H 1.08995 * 113.61468 * 105.46479 * 8 6 5 39 39 H 1.09003 * 113.61341 * 254.52987 * 12 6 5 40 40 H 1.09001 * 113.61540 * 25.35080 * 12 6 5 41 41 H 1.07994 * 119.96742 * 359.97438 * 14 13 2 42 42 H 1.08000 * 120.02974 * 180.27390 * 15 14 13 43 43 H 0.97006 * 120.00135 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.03010 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96356 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5743 7 6 1.8673 -1.8583 -3.8040 8 6 4.1282 -0.6528 -3.6271 9 6 4.0180 -0.3913 -5.1385 10 9 3.8522 -1.5545 -5.8978 11 9 5.0212 0.4457 -5.6388 12 6 2.6989 0.3400 -4.8362 13 6 2.0323 -0.7104 1.2304 14 6 2.0608 -2.0928 1.2657 15 6 2.5258 -2.7467 2.3897 16 6 2.9546 -2.0150 3.4895 17 8 3.4074 -2.6550 4.5977 18 6 3.9153 -1.8876 5.5832 19 1 3.8737 -0.8112 5.5051 20 6 4.4908 -2.4803 6.6966 21 7 4.5419 -3.7914 6.7914 22 14 5.1938 -1.4172 8.0623 23 1 4.1191 -0.5615 8.6264 24 1 5.7475 -2.2866 9.1312 25 1 6.2742 -0.5580 7.5144 26 6 2.9194 -0.6271 3.4530 27 6 2.4580 0.0211 2.3241 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.9173 -1.1205 -1.0288 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0463 -2.1182 34 1 0.8432 -1.6598 -4.1203 35 1 2.3829 -2.4270 -4.5779 36 1 1.8565 -2.4323 -2.8774 37 1 4.6471 0.1371 -3.0840 38 1 4.4969 -1.6488 -3.3820 39 1 1.9140 0.1450 -5.5671 40 1 2.8254 1.4016 -4.6239 41 1 1.7228 -2.6613 0.4120 42 1 2.5520 -3.8261 2.4150 43 1 4.9449 -4.2061 7.5703 44 1 3.2518 -0.0553 4.3068 45 1 2.4309 1.1003 2.2950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883256306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:28 Heat of formation + Delta-G solvation = -102.798180 kcal Electronic energy + Delta-G solvation = -27133.992550 eV Core-core repulsion = 22980.615548 eV Total energy + Delta-G solvation = -4153.377002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.82394 -48.16712 -40.89132 -40.12458 -38.77660 -36.42689 -34.26522 -32.23149 -31.72470 -29.71968 -29.22510 -27.37719 -27.28145 -26.61528 -23.86873 -23.58246 -22.67267 -21.28134 -19.74323 -19.70558 -18.85986 -18.50175 -17.64315 -17.31840 -16.82182 -16.54737 -16.26881 -15.83836 -15.60469 -15.47319 -15.22632 -15.07335 -14.89018 -14.65068 -14.45789 -14.31198 -14.24356 -13.96070 -13.87287 -13.57506 -13.49157 -13.13970 -13.00124 -12.86967 -12.73091 -12.46971 -12.35060 -12.22701 -12.14036 -11.94113 -11.79095 -11.49221 -11.37838 -11.23912 -11.15843 -10.77117 -9.74590 -9.25172 -8.88578 -8.46583 -6.14776 0.63042 0.71515 1.34731 1.45353 1.50980 2.18009 2.55316 2.81311 2.85626 3.12106 3.20999 3.31816 3.40621 3.54792 3.62379 3.93828 4.12920 4.17205 4.25463 4.27467 4.44160 4.49260 4.53298 4.63297 4.66378 4.72545 4.76284 4.78747 4.84649 4.85633 5.00324 5.06382 5.13423 5.16317 5.17303 5.20705 5.25224 5.32671 5.51072 5.57462 5.61174 5.73737 5.75962 6.03937 6.23450 6.29397 6.53356 6.98221 7.80159 8.76558 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002269 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.528858 B =12337.943160 C =12782.537132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.148 3.852 3 H 0.056 0.944 4 N -0.681 5.681 5 C 0.080 3.920 6 C -0.065 4.065 7 C -0.129 4.129 8 C -0.162 4.162 9 C 0.239 3.761 10 F -0.190 7.190 11 F -0.206 7.206 12 C -0.145 4.145 13 C -0.163 4.163 14 C -0.044 4.044 15 C -0.207 4.207 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.064 4.064 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.342 0.658 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 11.793 -22.587 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.039 3.961 3 H 0.074 0.926 4 N -0.312 5.312 5 C -0.048 4.048 6 C -0.065 4.065 7 C -0.186 4.186 8 C -0.200 4.200 9 C 0.202 3.798 10 F -0.171 7.171 11 F -0.187 7.187 12 C -0.183 4.183 13 C -0.164 4.164 14 C -0.062 4.062 15 C -0.226 4.226 16 C 0.063 3.937 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.263 4.263 27 C -0.082 4.082 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.168 11.144 -22.603 25.945 hybrid contribution 1.512 0.297 1.031 1.854 sum -4.656 11.441 -21.572 24.858 Atomic orbital electron populations 1.21741 0.93516 1.02068 1.01413 1.20141 0.95758 0.94664 0.85572 0.92609 1.60584 1.33574 1.33082 1.03999 1.21884 1.01548 0.92887 0.88527 1.21574 0.93355 0.96953 0.94630 1.21596 0.99957 0.94592 1.02440 1.24337 0.98729 1.05663 0.91264 1.22496 0.89120 0.78750 0.89389 1.92966 1.95598 1.49940 1.78634 1.92981 1.64327 1.71404 1.89988 1.24211 0.94090 1.01765 0.98258 1.19773 1.06274 0.93405 0.96909 1.20771 0.95454 0.94203 0.95771 1.20496 1.09170 0.99452 0.93507 1.19971 0.93589 0.92503 0.87668 1.83943 1.70026 1.36543 1.23571 1.21769 1.38394 0.91361 0.97424 0.88148 1.26579 0.96932 0.97792 1.00772 1.70179 1.44048 1.11002 1.30780 0.84668 0.78833 0.77081 0.75766 1.18129 1.19690 1.18170 1.21218 1.10348 0.93460 1.01266 1.20943 0.95668 0.99932 0.91671 0.93003 0.92883 0.91299 0.83909 0.89435 0.94028 0.91479 0.92975 0.90902 0.86385 0.89068 0.87879 0.85485 0.83518 0.87307 0.91867 0.86601 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.39 71.98 0.68 -1.70 16 2 C 0.15 2.90 2.81 44.17 0.12 3.03 16 3 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 4 N -0.68 -11.26 4.60 -495.45 -2.28 -13.54 16 5 C 0.08 0.97 4.96 86.30 0.43 1.39 16 6 C -0.06 -0.77 1.10 -51.66 -0.06 -0.82 16 7 C -0.13 -1.78 8.90 71.98 0.64 -1.14 16 8 C -0.16 -2.21 7.00 31.12 0.22 -1.99 16 9 C 0.24 3.81 3.26 31.13 0.10 3.91 16 10 F -0.19 -3.74 15.52 44.97 0.70 -3.04 16 11 F -0.21 -4.03 17.41 44.97 0.78 -3.25 16 12 C -0.14 -1.52 7.02 31.13 0.22 -1.30 16 13 C -0.16 -4.58 4.71 -19.83 -0.09 -4.67 16 14 C -0.04 -1.39 9.00 22.25 0.20 -1.19 16 15 C -0.21 -8.63 9.99 22.39 0.22 -8.41 16 16 C 0.11 5.55 6.65 22.58 0.15 5.70 16 17 O -0.23 -14.09 9.76 -22.73 -0.22 -14.31 16 18 C -0.41 -24.04 9.49 67.92 0.64 -23.40 16 19 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 20 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 21 N -0.92 -56.77 13.67 21.61 0.30 -56.48 16 22 Si 1.02 42.69 29.55 68.60 2.03 44.72 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 C -0.24 -10.32 9.17 22.39 0.21 -10.11 16 27 C -0.06 -2.05 9.66 22.25 0.21 -1.84 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.00 7.45 -2.39 -0.02 0.98 16 31 H 0.34 6.30 7.99 -89.69 -0.72 5.58 16 32 H 0.09 0.94 7.44 -2.39 -0.02 0.92 16 33 H 0.04 0.47 7.86 -2.38 -0.02 0.45 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.80 6.20 -2.39 -0.01 0.78 16 36 H 0.07 1.16 7.27 -2.38 -0.02 1.14 16 37 H 0.12 1.42 7.96 -2.39 -0.02 1.40 16 38 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.10 0.93 8.10 -2.39 -0.02 0.92 16 40 H 0.13 0.94 8.10 -2.39 -0.02 0.92 16 41 H 0.15 3.87 7.72 -2.91 -0.02 3.85 16 42 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 43 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 44 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 45 H 0.14 3.53 8.03 -2.91 -0.02 3.50 16 Total: -1.00 -69.27 371.97 5.96 -63.31 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.29 Total: 26.00 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 4.36 Total: -43.41 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.98 Total: -70.02 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.22 Total: -14.31 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.48 Total: -6.29 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.27 5.96 -63.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883256306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.490 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds