Wall clock time and date at job start Tue Mar 31 2020 14:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46946 * 2 1 4 4 H 1.08998 * 109.47458 * 304.99696 * 3 2 1 5 5 C 1.53005 * 109.46994 * 184.99895 * 3 2 1 6 6 S 1.81397 * 109.47239 * 179.97438 * 5 3 2 7 7 C 1.81395 * 103.00196 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47433 * 65.00280 * 3 2 1 9 9 C 1.46503 * 119.99965 * 59.99345 * 8 3 2 10 10 C 1.34777 * 120.00024 * 240.00011 * 8 3 2 11 11 O 1.21605 * 119.99886 * 4.55996 * 10 8 3 12 12 C 1.47428 * 119.99953 * 184.56248 * 10 8 3 13 13 C 1.41290 * 126.41085 * 322.63013 * 12 10 8 14 14 N 1.30451 * 108.01998 * 179.72293 * 13 12 10 15 15 N 1.39937 * 108.89680 * 0.43802 * 14 13 12 16 16 C 1.46504 * 125.75362 * 179.80866 * 15 14 13 17 17 C 1.50703 * 109.47348 * 269.69701 * 16 15 14 18 18 H 1.07999 * 119.99926 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99828 * 179.72396 * 17 16 15 20 20 N 1.31507 * 120.00051 * 0.28141 * 19 17 16 21 21 Si 1.86804 * 119.99792 * 180.27774 * 19 17 16 22 22 H 1.48497 * 109.46832 * 60.00123 * 21 19 17 23 23 H 1.48496 * 109.47083 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46871 * 300.00095 * 21 19 17 25 25 C 1.34262 * 108.49179 * 359.55560 * 15 14 13 26 26 C 1.50697 * 126.29525 * 180.25944 * 25 15 14 27 27 H 1.09004 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47372 * 299.99986 * 1 2 3 29 29 H 1.08999 * 109.47491 * 60.00199 * 1 2 3 30 30 H 1.09007 * 109.46778 * 240.00025 * 2 1 3 31 31 H 1.09001 * 109.47185 * 120.00248 * 2 1 3 32 32 H 1.09000 * 109.47283 * 300.00465 * 5 3 2 33 33 H 1.09001 * 109.46841 * 60.00513 * 5 3 2 34 34 H 1.08997 * 109.47217 * 300.00180 * 7 6 5 35 35 H 1.09007 * 109.46823 * 60.00393 * 7 6 5 36 36 H 1.09002 * 109.47320 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47259 * 264.78916 * 9 8 3 38 38 H 1.09001 * 109.46681 * 24.79166 * 9 8 3 39 39 H 1.08999 * 109.47172 * 144.78848 * 9 8 3 40 40 H 1.07995 * 125.99268 * 0.02562 * 13 12 10 41 41 H 1.09002 * 109.46599 * 149.69775 * 16 15 14 42 42 H 1.08993 * 109.46822 * 29.70036 * 16 15 14 43 43 H 0.97004 * 120.00009 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.47175 * 89.96937 * 26 25 15 45 45 H 1.08992 * 109.47630 * 209.97564 * 26 25 15 46 46 H 1.09002 * 109.46828 * 329.97296 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 16 4.1694 3.1545 -0.1265 7 6 5.9654 2.9524 -0.2812 8 7 1.6524 2.0975 1.2518 9 6 2.1139 1.5589 2.5337 10 6 0.8713 3.1955 1.2242 11 8 0.4201 3.5942 0.1676 12 6 0.5640 3.9132 2.4747 13 6 0.3264 3.3301 3.7396 14 7 0.0969 4.2918 4.5906 15 7 0.1656 5.5175 3.9188 16 6 -0.0373 6.8370 4.5221 17 6 -1.4943 7.2116 4.4326 18 1 -2.1987 6.5344 3.9726 19 6 -1.9289 8.4163 4.9434 20 7 -1.0712 9.2407 5.5038 21 14 -3.7362 8.8773 4.8394 22 1 -4.5473 7.8665 5.5643 23 1 -3.9426 10.2127 5.4552 24 1 -4.1550 8.9194 3.4153 25 6 0.4543 5.2805 2.6291 26 6 0.6270 6.3168 1.5487 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 3.9994 0.9052 0.7161 33 1 3.8531 0.9570 -1.0571 34 1 6.3403 2.3759 0.5645 35 1 6.1933 2.4271 -1.2087 36 1 6.4418 3.9327 -0.2919 37 1 1.3493 0.9018 2.9481 38 1 3.0339 0.9947 2.3807 39 1 2.3018 2.3795 3.2261 40 1 0.3381 2.2738 3.9638 41 1 0.5613 7.5759 3.9895 42 1 0.2670 6.8087 5.5683 43 1 -1.3770 10.0880 5.8636 44 1 1.6721 6.6233 1.5029 45 1 0.3299 5.8942 0.5890 46 1 0.0040 7.1827 1.7729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889852055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:02 Heat of formation + Delta-G solvation = 11.178613 kcal Electronic energy + Delta-G solvation = -26166.388739 eV Core-core repulsion = 22604.087279 eV Total energy + Delta-G solvation = -3562.301460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34308 -40.53881 -37.60419 -35.84007 -34.36153 -33.58473 -32.61171 -31.15216 -29.73798 -29.06741 -28.26119 -27.70730 -25.50359 -24.83849 -23.37940 -21.79523 -20.75781 -19.77870 -18.84729 -18.30165 -17.47098 -17.17262 -16.78984 -16.51601 -16.25343 -15.94291 -15.25440 -15.04507 -14.95607 -14.75685 -14.65341 -14.30234 -14.23979 -14.03360 -13.82008 -13.65592 -13.64272 -13.51395 -13.42254 -13.19480 -12.94229 -12.83614 -12.78378 -12.69491 -12.29869 -12.10284 -11.93575 -11.84729 -11.75570 -11.68147 -10.78610 -10.76149 -10.68594 -10.20369 -9.60723 -9.34032 -8.60460 -8.37610 -6.54183 0.77582 0.80375 1.36089 1.38377 1.41796 1.47686 1.69363 1.77796 2.11153 2.32692 2.45698 2.93996 3.58869 3.76473 3.79730 4.02125 4.12448 4.17017 4.22232 4.28355 4.35461 4.36651 4.37407 4.51815 4.56613 4.60153 4.62742 4.75212 4.79692 4.86410 4.90229 4.92323 4.96991 5.02623 5.03950 5.11023 5.16042 5.25378 5.44555 5.49099 5.67561 5.75689 5.79033 6.08457 6.49397 6.55223 6.87614 7.16845 7.37114 8.69850 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.003230 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.817392 B = 8667.120105 C = 9313.275408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.154 3.846 4 H 0.079 0.921 5 C -0.080 4.080 6 S -0.326 6.326 7 C -0.109 4.109 8 N -0.593 5.593 9 C 0.073 3.927 10 C 0.612 3.388 11 O -0.583 6.583 12 C -0.321 4.321 13 C 0.076 3.924 14 N -0.335 5.335 15 N -0.338 5.338 16 C 0.270 3.730 17 C -0.558 4.558 18 H 0.049 0.951 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.970 3.030 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.268 1.268 25 C 0.137 3.863 26 C -0.091 4.091 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.220 0.780 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.275 0.725 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.092 -20.450 -11.146 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.050 3.950 4 H 0.097 0.903 5 C -0.228 4.228 6 S -0.100 6.100 7 C -0.277 4.277 8 N -0.324 5.324 9 C -0.070 4.070 10 C 0.402 3.598 11 O -0.463 6.463 12 C -0.336 4.336 13 C -0.110 4.110 14 N -0.155 5.155 15 N -0.115 5.115 16 C 0.151 3.849 17 C -0.596 4.596 18 H 0.067 0.933 19 C -0.176 4.176 20 N -0.553 5.553 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.193 1.193 25 C 0.002 3.998 26 C -0.149 4.149 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.065 -18.688 -10.194 24.469 hybrid contribution -0.075 -0.366 -0.546 0.662 sum 11.990 -19.054 -10.741 24.943 Atomic orbital electron populations 1.21678 0.96142 1.01829 1.00862 1.21827 0.95777 0.93269 1.04654 1.20919 0.91851 0.95087 0.87129 0.90299 1.23877 0.97906 0.93996 1.07046 1.87954 1.09010 1.15525 1.97526 1.23370 0.91899 1.06736 1.05720 1.47491 1.49652 1.27343 1.07945 1.22101 1.01033 0.99655 0.84167 1.17138 0.76945 0.79394 0.86357 1.90671 1.54407 1.68139 1.33127 1.19899 1.25708 0.91922 0.96093 1.24508 0.97296 1.00032 0.89163 1.77070 1.25651 0.89594 1.23219 1.49033 1.49229 1.07331 1.05925 1.19311 0.97356 0.74113 0.94086 1.21378 0.93120 1.03976 1.41115 0.93274 1.25709 1.02954 0.95358 0.93607 1.69984 1.36520 1.10638 1.38205 0.85428 0.78612 0.77738 0.78888 1.19817 1.19528 1.19329 1.21783 0.95085 0.96088 0.86888 1.20514 1.03269 0.95827 0.95254 0.90921 0.94458 0.94297 0.88564 0.89268 0.87682 0.87018 0.89443 0.89231 0.88305 0.90725 0.88767 0.91763 0.76369 0.93412 0.94997 0.91621 0.89232 0.88964 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.80 71.98 0.71 -1.84 16 2 C -0.12 -1.45 5.36 30.59 0.16 -1.28 16 3 C 0.15 2.94 2.08 44.99 0.09 3.03 16 4 H 0.08 2.06 6.91 -2.39 -0.02 2.05 16 5 C -0.08 -1.15 5.30 71.98 0.38 -0.77 16 6 S -0.33 -7.26 21.96 -56.49 -1.24 -8.50 16 7 C -0.11 -1.46 10.76 113.37 1.22 -0.24 16 8 N -0.59 -13.95 1.75 -826.47 -1.45 -15.40 16 9 C 0.07 1.23 7.96 127.77 1.02 2.25 16 10 C 0.61 20.77 7.46 86.66 0.65 21.42 16 11 O -0.58 -23.59 14.89 -4.05 -0.06 -23.65 16 12 C -0.32 -12.14 5.36 -20.15 -0.11 -12.25 16 13 C 0.08 2.67 9.72 85.65 0.83 3.50 16 14 N -0.34 -14.88 12.50 -56.28 -0.70 -15.58 16 15 N -0.34 -16.16 3.56 -336.69 -1.20 -17.36 16 16 C 0.27 14.37 5.78 85.63 0.50 14.86 16 17 C -0.56 -31.72 9.39 25.60 0.24 -31.48 16 18 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 19 C 0.03 1.40 5.46 84.66 0.46 1.86 16 20 N -0.92 -52.14 13.29 21.45 0.28 -51.85 16 21 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C 0.14 5.91 7.00 42.14 0.29 6.20 16 26 C -0.09 -3.56 9.68 71.23 0.69 -2.87 16 27 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.04 0.80 7.75 -2.39 -0.02 0.78 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.78 7.51 -2.39 -0.02 0.76 16 32 H 0.10 1.07 6.66 -2.39 -0.02 1.05 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 0.98 7.31 -2.39 -0.02 0.96 16 38 H 0.09 1.04 6.44 -2.39 -0.02 1.02 16 39 H 0.06 1.37 5.89 -2.39 -0.01 1.36 16 40 H 0.22 5.40 6.30 -2.91 -0.02 5.38 16 41 H 0.05 2.55 7.62 -2.39 -0.02 2.53 16 42 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 44 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 45 H 0.09 3.62 6.64 -2.39 -0.02 3.61 16 46 H 0.07 2.95 7.70 -2.39 -0.02 2.93 16 Total: -1.00 -72.60 386.04 5.76 -66.84 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.97 Total: 17.31 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 7.13 Total: 2.39 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -3.07 Total: -100.20 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.24 Total: -8.50 kcal Total: -72.60 5.76 -66.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889852055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.022 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds