Wall clock time and date at job start Tue Mar 31 2020 14:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99814 * 2 1 4 4 N 1.46904 * 109.47082 * 121.14459 * 3 2 1 5 5 C 1.46894 * 111.00189 * 163.73544 * 4 3 2 6 6 C 1.50695 * 109.47233 * 287.77521 * 5 4 3 7 7 C 1.31003 * 119.99952 * 124.99895 * 6 5 4 8 8 C 1.46907 * 110.99841 * 287.69262 * 4 3 2 9 9 C 1.50703 * 109.46901 * 169.99838 * 8 4 3 10 10 N 1.29828 * 118.34727 * 359.97438 * 9 8 4 11 11 C 1.35629 * 121.62182 * 180.02562 * 10 9 8 12 12 C 1.39631 * 121.62522 * 180.02562 * 11 10 9 13 13 C 1.37716 * 119.69617 * 179.97438 * 12 11 10 14 14 C 1.38876 * 120.82762 * 0.04119 * 13 12 11 15 15 C 1.37796 * 120.56718 * 359.95664 * 14 13 12 16 16 C 1.39370 * 119.52169 * 0.02562 * 15 14 13 17 17 C 1.46958 * 121.90570 * 180.02562 * 16 15 14 18 18 O 1.21718 * 121.29052 * 359.97438 * 17 16 15 19 19 N 1.35347 * 117.42503 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.71892 * 180.27341 * 19 17 16 21 21 H 1.08001 * 120.00201 * 137.97285 * 20 19 17 22 22 C 1.39078 * 119.99623 * 317.97371 * 20 19 17 23 23 N 1.31257 * 119.99408 * 159.69388 * 22 20 19 24 24 Si 1.86793 * 120.00200 * 339.69414 * 22 20 19 25 25 H 1.48499 * 109.47136 * 95.04094 * 24 22 20 26 26 H 1.48499 * 109.47204 * 215.04061 * 24 22 20 27 27 H 1.48495 * 109.47419 * 335.04015 * 24 22 20 28 28 H 1.07998 * 120.00159 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99826 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00561 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47053 * 1.14957 * 3 2 1 32 32 H 1.09001 * 109.47532 * 241.14786 * 3 2 1 33 33 H 1.09004 * 109.46891 * 47.77532 * 5 4 3 34 34 H 1.09002 * 109.46944 * 167.77281 * 5 4 3 35 35 H 1.08003 * 119.99903 * 304.99982 * 6 5 4 36 36 H 1.08005 * 119.99476 * 179.97438 * 7 6 5 37 37 H 1.07990 * 119.99923 * 0.02562 * 7 6 5 38 38 H 1.09002 * 109.47241 * 49.99454 * 8 4 3 39 39 H 1.09003 * 109.46818 * 289.99887 * 8 4 3 40 40 H 1.08003 * 120.15234 * 359.94948 * 12 11 10 41 41 H 1.07999 * 119.58478 * 180.02562 * 13 12 11 42 42 H 1.07993 * 119.71347 * 179.97438 * 14 13 12 43 43 H 1.08004 * 120.23558 * 179.97438 * 15 14 13 44 44 H 0.97002 * 119.99655 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9286 1.3711 1.1854 5 6 3.9474 2.4187 1.0360 6 6 4.9783 1.9771 0.0295 7 6 5.2487 2.7329 -1.0059 8 6 2.1359 1.5776 2.4049 9 6 3.0173 1.3956 3.6137 10 7 4.2679 1.1016 3.4262 11 6 5.1200 0.9227 4.4660 12 6 6.4651 0.6070 4.2644 13 6 7.2955 0.4346 5.3494 14 6 6.8120 0.5698 6.6443 15 6 5.4886 0.8810 6.8692 16 6 4.6314 1.0600 5.7850 17 6 3.2114 1.3933 5.9643 18 8 2.7283 1.5257 7.0736 19 7 2.4614 1.5474 4.8482 20 6 1.1323 1.8642 4.9608 21 1 0.6941 2.5976 4.3002 22 6 0.3483 1.2410 5.9259 23 7 -0.7783 1.7926 6.3124 24 14 0.8986 -0.3807 6.6718 25 1 1.6254 -0.1207 7.9403 26 1 -0.2898 -1.2276 6.9468 27 1 1.7976 -1.0830 5.7212 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3553 2.1335 0.0206 32 1 2.6746 1.3719 -0.9001 33 1 3.4747 3.3388 0.6922 34 1 4.4303 2.5956 1.9971 35 1 5.4942 1.0375 0.1616 36 1 5.9878 2.4165 -1.7270 37 1 4.7331 3.6726 -1.1378 38 1 1.3220 0.8532 2.4362 39 1 1.7242 2.5868 2.4040 40 1 6.8525 0.4982 3.2621 41 1 8.3357 0.1908 5.1914 42 1 7.4790 0.4303 7.4820 43 1 5.1182 0.9845 7.8784 44 1 -1.3249 1.3581 6.9858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916638816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:33 Heat of formation + Delta-G solvation = 86.687240 kcal Electronic energy + Delta-G solvation = -28078.532628 eV Core-core repulsion = 24384.061517 eV Total energy + Delta-G solvation = -3694.471112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91065 -38.26339 -37.85136 -36.39050 -34.15615 -33.87315 -32.54425 -32.25469 -30.65482 -29.61901 -27.16314 -26.40765 -25.90891 -23.53351 -22.78226 -21.51133 -20.91498 -19.61780 -19.51062 -18.89679 -18.01109 -17.34124 -16.07970 -15.80960 -15.51044 -15.22292 -14.70349 -14.63562 -14.29619 -14.16554 -13.93993 -13.59936 -13.53107 -13.21680 -12.99787 -12.94104 -12.85119 -12.53917 -12.20899 -11.74899 -11.59008 -11.44023 -11.33606 -11.16226 -10.92758 -10.90681 -10.70480 -10.65036 -10.31378 -9.45891 -9.42177 -9.14689 -9.09610 -8.89096 -8.79087 -8.52596 -8.05732 -7.27487 -6.78965 -4.60941 1.26265 1.40520 2.31049 2.51846 2.91508 3.10388 3.21371 3.32863 3.57272 3.66496 4.11170 4.35997 4.54785 4.65166 4.89837 5.04735 5.12854 5.20957 5.24149 5.30949 5.33062 5.38165 5.56966 5.58840 5.67129 5.72280 5.82082 5.84662 5.92298 6.03242 6.07002 6.13143 6.19576 6.32544 6.49192 6.61896 6.76135 6.77583 6.80226 6.85331 6.87438 6.88124 7.14947 7.27601 7.34938 7.39406 7.43183 7.89286 8.22345 8.61034 8.91630 9.05925 10.21357 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009248 B = 0.006542 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.039871 B = 4278.991214 C = 6626.999945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C 0.080 3.920 4 N -0.511 5.511 5 C 0.078 3.922 6 C -0.113 4.113 7 C -0.218 4.218 8 C 0.123 3.877 9 C 0.364 3.636 10 N -0.533 5.533 11 C 0.167 3.833 12 C -0.125 4.125 13 C -0.087 4.087 14 C -0.171 4.171 15 C -0.040 4.040 16 C -0.214 4.214 17 C 0.492 3.508 18 O -0.512 6.512 19 N -0.367 5.367 20 C -0.381 4.381 21 H 0.120 0.880 22 C 0.108 3.892 23 N -0.820 5.820 24 Si 0.898 3.102 25 H -0.246 1.246 26 H -0.291 1.291 27 H -0.273 1.273 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -1.670 -10.719 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.158 4.158 3 C -0.047 4.047 4 N -0.234 5.234 5 C -0.049 4.049 6 C -0.131 4.131 7 C -0.256 4.256 8 C -0.006 4.006 9 C 0.102 3.898 10 N -0.259 5.259 11 C 0.051 3.949 12 C -0.145 4.145 13 C -0.106 4.106 14 C -0.190 4.190 15 C -0.060 4.060 16 C -0.221 4.221 17 C 0.289 3.711 18 O -0.390 6.390 19 N -0.072 5.072 20 C -0.507 4.507 21 H 0.137 0.863 22 C -0.109 4.109 23 N -0.449 5.449 24 Si 0.726 3.274 25 H -0.171 1.171 26 H -0.218 1.218 27 H -0.197 1.197 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.626 -2.085 -10.516 13.760 hybrid contribution -0.605 0.097 1.257 1.398 sum 8.022 -1.988 -9.259 12.411 Atomic orbital electron populations 1.23858 0.95968 1.01801 1.01535 1.22880 0.95416 0.98666 0.98829 1.21264 0.95000 0.94699 0.93744 1.61567 1.13711 1.47501 1.00670 1.21398 0.92033 0.90787 1.00668 1.22917 0.96709 0.99288 0.94194 1.23756 1.02998 1.00351 0.98465 1.20823 0.93334 1.01900 0.84568 1.22796 0.90515 0.90117 0.86375 1.68536 1.01299 1.25857 1.30210 1.18876 0.93993 0.94354 0.87692 1.20632 0.91257 1.03570 0.99043 1.21040 0.99094 0.98083 0.92422 1.20883 0.95279 1.05955 0.96850 1.20922 0.92687 0.94195 0.98158 1.20729 0.94427 1.11656 0.95334 1.18595 0.86011 0.81345 0.85105 1.90695 1.73527 1.51181 1.23599 1.42480 1.11205 1.48931 1.04562 1.19274 0.81418 1.26673 1.23306 0.86299 1.25286 0.94067 0.98092 0.93476 1.69645 1.12901 1.36758 1.25579 0.86499 0.78338 0.80387 0.82193 1.17095 1.21838 1.19737 0.88729 0.88536 0.86987 0.94450 0.89831 0.95513 0.87613 0.86816 0.88850 0.89236 0.87126 0.92098 0.85379 0.86211 0.86321 0.85652 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 14.32 29.02 0.42 -1.88 16 2 C -0.14 -1.75 8.83 -36.02 -0.32 -2.06 16 3 C 0.08 1.01 5.26 -4.97 -0.03 0.99 16 4 N -0.51 -7.68 4.05 -238.95 -0.97 -8.64 16 5 C 0.08 1.11 4.88 -4.98 -0.02 1.09 16 6 C -0.11 -1.40 8.78 -36.03 -0.32 -1.71 16 7 C -0.22 -2.32 14.32 29.01 0.42 -1.91 16 8 C 0.12 2.17 3.94 -4.97 -0.02 2.15 16 9 C 0.36 7.65 7.06 -154.87 -1.09 6.56 16 10 N -0.53 -10.61 7.24 -8.10 -0.06 -10.67 16 11 C 0.17 3.35 6.63 -84.50 -0.56 2.79 16 12 C -0.13 -2.06 10.03 -39.25 -0.39 -2.45 16 13 C -0.09 -1.25 10.00 -39.54 -0.40 -1.65 16 14 C -0.17 -2.64 10.02 -39.51 -0.40 -3.03 16 15 C -0.04 -0.77 9.68 -39.32 -0.38 -1.15 16 16 C -0.21 -4.72 5.89 -104.77 -0.62 -5.34 16 17 C 0.49 12.48 5.87 -12.47 -0.07 12.41 16 18 O -0.51 -14.24 12.22 5.17 0.06 -14.17 16 19 N -0.37 -8.95 2.32 -59.56 -0.14 -9.08 16 20 C -0.38 -9.84 8.67 -14.88 -0.13 -9.97 16 21 H 0.12 3.04 7.24 -52.49 -0.38 2.66 16 22 C 0.11 2.91 4.84 -17.49 -0.08 2.82 16 23 N -0.82 -22.47 13.95 55.50 0.77 -21.70 16 24 Si 0.90 22.83 24.84 -169.99 -4.22 18.61 16 25 H -0.25 -6.58 6.28 56.52 0.36 -6.22 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 28 H 0.09 1.08 7.83 -52.49 -0.41 0.67 16 29 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.04 0.46 7.69 -51.93 -0.40 0.06 16 32 H 0.08 0.97 7.18 -51.93 -0.37 0.60 16 33 H 0.03 0.36 7.70 -51.93 -0.40 -0.04 16 34 H 0.11 1.75 5.64 -51.93 -0.29 1.45 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.09 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.09 0.91 7.84 -52.49 -0.41 0.50 16 38 H 0.11 2.02 7.19 -51.93 -0.37 1.64 16 39 H 0.06 1.05 7.56 -51.93 -0.39 0.66 16 40 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.13 2.37 7.83 -52.48 -0.41 1.96 16 44 H 0.29 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -29.37 362.56 -9.07 -38.44 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.99 Total: 4.12 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -4.00 Total: -2.36 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.39 Total: -50.10 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.06 Total: -14.17 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.22 Total: 18.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.37 -9.07 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916638816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.126 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds