Wall clock time and date at job start Tue Mar 31 2020 14:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99814 * 2 1 4 4 N 1.46904 * 109.47082 * 121.14459 * 3 2 1 5 5 C 1.46894 * 111.00189 * 163.73544 * 4 3 2 6 6 C 1.50695 * 109.47233 * 287.77521 * 5 4 3 7 7 C 1.31003 * 119.99952 * 124.99895 * 6 5 4 8 8 C 1.46907 * 110.99841 * 287.69262 * 4 3 2 9 9 C 1.50703 * 109.46901 * 169.99838 * 8 4 3 10 10 N 1.29828 * 118.34727 * 359.97438 * 9 8 4 11 11 C 1.35629 * 121.62182 * 180.02562 * 10 9 8 12 12 C 1.39631 * 121.62522 * 180.02562 * 11 10 9 13 13 C 1.37716 * 119.69617 * 179.97438 * 12 11 10 14 14 C 1.38876 * 120.82762 * 0.04119 * 13 12 11 15 15 C 1.37796 * 120.56718 * 359.95664 * 14 13 12 16 16 C 1.39370 * 119.52169 * 0.02562 * 15 14 13 17 17 C 1.46958 * 121.90570 * 180.02562 * 16 15 14 18 18 O 1.21718 * 121.29052 * 359.97438 * 17 16 15 19 19 N 1.35347 * 117.42503 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.71892 * 180.27341 * 19 17 16 21 21 H 1.08001 * 120.00201 * 137.97285 * 20 19 17 22 22 C 1.39078 * 119.99623 * 317.97371 * 20 19 17 23 23 N 1.31257 * 119.99408 * 159.69388 * 22 20 19 24 24 Si 1.86793 * 120.00200 * 339.69414 * 22 20 19 25 25 H 1.48499 * 109.47136 * 95.04094 * 24 22 20 26 26 H 1.48499 * 109.47204 * 215.04061 * 24 22 20 27 27 H 1.48495 * 109.47419 * 335.04015 * 24 22 20 28 28 H 1.07998 * 120.00159 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99826 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00561 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47053 * 1.14957 * 3 2 1 32 32 H 1.09001 * 109.47532 * 241.14786 * 3 2 1 33 33 H 1.09004 * 109.46891 * 47.77532 * 5 4 3 34 34 H 1.09002 * 109.46944 * 167.77281 * 5 4 3 35 35 H 1.08003 * 119.99903 * 304.99982 * 6 5 4 36 36 H 1.08005 * 119.99476 * 179.97438 * 7 6 5 37 37 H 1.07990 * 119.99923 * 0.02562 * 7 6 5 38 38 H 1.09002 * 109.47241 * 49.99454 * 8 4 3 39 39 H 1.09003 * 109.46818 * 289.99887 * 8 4 3 40 40 H 1.08003 * 120.15234 * 359.94948 * 12 11 10 41 41 H 1.07999 * 119.58478 * 180.02562 * 13 12 11 42 42 H 1.07993 * 119.71347 * 179.97438 * 14 13 12 43 43 H 1.08004 * 120.23558 * 179.97438 * 15 14 13 44 44 H 0.97002 * 119.99655 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9286 1.3711 1.1854 5 6 3.9474 2.4187 1.0360 6 6 4.9783 1.9771 0.0295 7 6 5.2487 2.7329 -1.0059 8 6 2.1359 1.5776 2.4049 9 6 3.0173 1.3956 3.6137 10 7 4.2679 1.1016 3.4262 11 6 5.1200 0.9227 4.4660 12 6 6.4651 0.6070 4.2644 13 6 7.2955 0.4346 5.3494 14 6 6.8120 0.5698 6.6443 15 6 5.4886 0.8810 6.8692 16 6 4.6314 1.0600 5.7850 17 6 3.2114 1.3933 5.9643 18 8 2.7283 1.5257 7.0736 19 7 2.4614 1.5474 4.8482 20 6 1.1323 1.8642 4.9608 21 1 0.6941 2.5976 4.3002 22 6 0.3483 1.2410 5.9259 23 7 -0.7783 1.7926 6.3124 24 14 0.8986 -0.3807 6.6718 25 1 1.6254 -0.1207 7.9403 26 1 -0.2898 -1.2276 6.9468 27 1 1.7976 -1.0830 5.7212 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3553 2.1335 0.0206 32 1 2.6746 1.3719 -0.9001 33 1 3.4747 3.3388 0.6922 34 1 4.4303 2.5956 1.9971 35 1 5.4942 1.0375 0.1616 36 1 5.9878 2.4165 -1.7270 37 1 4.7331 3.6726 -1.1378 38 1 1.3220 0.8532 2.4362 39 1 1.7242 2.5868 2.4040 40 1 6.8525 0.4982 3.2621 41 1 8.3357 0.1908 5.1914 42 1 7.4790 0.4303 7.4820 43 1 5.1182 0.9845 7.8784 44 1 -1.3249 1.3581 6.9858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916638816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:32 Heat of formation + Delta-G solvation = 70.219277 kcal Electronic energy + Delta-G solvation = -28079.246733 eV Core-core repulsion = 24384.061517 eV Total energy + Delta-G solvation = -3695.185216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.60543 -39.55764 -39.43502 -37.98192 -35.70977 -35.05152 -34.12446 -33.65164 -32.12955 -31.04683 -28.52685 -27.74113 -27.43729 -25.03653 -24.29067 -22.90537 -22.36053 -20.73891 -20.60046 -20.47410 -19.64100 -18.92113 -17.90931 -17.07817 -16.96027 -16.55044 -16.31926 -16.07637 -15.80211 -15.45194 -15.23130 -15.05407 -14.95337 -14.84786 -14.59525 -14.46836 -14.03234 -13.92768 -13.69427 -13.32917 -12.99560 -12.83580 -12.67603 -12.53217 -12.39881 -12.37560 -12.16184 -11.90427 -11.70913 -11.24756 -11.01244 -10.70647 -10.63360 -10.35920 -10.00146 -9.99362 -9.24773 -8.90539 -8.76915 -6.62859 -0.26444 -0.09316 1.04938 1.14952 1.26091 1.32367 1.35465 1.59548 1.90649 1.99290 2.15741 2.67287 3.09226 3.12553 3.21501 3.59272 3.82939 4.01685 4.07449 4.16183 4.20433 4.27545 4.33645 4.39913 4.40900 4.49820 4.61273 4.68963 4.78340 4.82068 4.87195 5.02000 5.09225 5.13579 5.19960 5.25388 5.30292 5.48730 5.49494 5.56014 5.76545 5.80045 5.88151 5.90278 5.91397 6.08878 6.13082 6.31046 6.35103 6.67877 7.16108 7.24502 8.23863 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009248 B = 0.006542 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.039871 B = 4278.991214 C = 6626.999945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.084 3.916 4 N -0.514 5.514 5 C 0.082 3.918 6 C -0.131 4.131 7 C -0.194 4.194 8 C 0.131 3.869 9 C 0.359 3.641 10 N -0.510 5.510 11 C 0.137 3.863 12 C -0.117 4.117 13 C -0.066 4.066 14 C -0.141 4.141 15 C -0.069 4.069 16 C -0.238 4.238 17 C 0.472 3.528 18 O -0.558 6.558 19 N -0.386 5.386 20 C -0.385 4.385 21 H 0.111 0.889 22 C 0.079 3.921 23 N -0.856 5.856 24 Si 0.936 3.064 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.283 1.283 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.156 0.844 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.480 -2.563 -12.893 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C -0.043 4.043 4 N -0.238 5.238 5 C -0.045 4.045 6 C -0.149 4.149 7 C -0.231 4.231 8 C 0.002 3.998 9 C 0.096 3.904 10 N -0.235 5.235 11 C 0.023 3.977 12 C -0.136 4.136 13 C -0.086 4.086 14 C -0.160 4.160 15 C -0.089 4.089 16 C -0.245 4.245 17 C 0.271 3.729 18 O -0.440 6.440 19 N -0.092 5.092 20 C -0.511 4.511 21 H 0.129 0.871 22 C -0.134 4.134 23 N -0.487 5.487 24 Si 0.764 3.236 25 H -0.199 1.199 26 H -0.199 1.199 27 H -0.209 1.209 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.173 0.827 41 H 0.193 0.807 42 H 0.179 0.821 43 H 0.133 0.867 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.608 -3.000 -12.744 18.176 hybrid contribution -1.385 0.367 1.814 2.312 sum 11.223 -2.633 -10.929 15.885 Atomic orbital electron populations 1.24011 0.95930 1.02464 1.00488 1.22902 0.95680 0.98595 0.99765 1.21299 0.95006 0.94903 0.93082 1.61604 1.13907 1.47912 1.00348 1.21323 0.92153 0.90953 1.00102 1.22712 0.97326 1.00005 0.94878 1.23945 1.02018 0.99690 0.97460 1.20718 0.92829 1.01492 0.84800 1.23409 0.91180 0.89603 0.86224 1.68648 1.00685 1.23956 1.30167 1.19379 0.95762 0.95744 0.86832 1.21066 0.89465 1.01745 1.01354 1.21667 1.01231 0.94764 0.90897 1.21430 0.93724 1.01710 0.99087 1.21085 0.94399 0.96279 0.97119 1.20880 0.93037 1.13207 0.97353 1.19252 0.87583 0.81190 0.84856 1.90635 1.74583 1.53777 1.25001 1.42504 1.10644 1.50617 1.05480 1.19164 0.82237 1.26619 1.23086 0.87144 1.25644 0.94301 0.99310 0.94096 1.69671 1.13993 1.37830 1.27256 0.85939 0.77932 0.79482 0.80215 1.19945 1.19931 1.20868 0.88412 0.87626 0.87104 0.94079 0.88300 0.94909 0.90198 0.87121 0.86916 0.88645 0.87988 0.92224 0.82667 0.80730 0.82101 0.86658 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.38 14.32 67.78 0.97 -3.41 16 2 C -0.15 -3.65 8.83 25.65 0.23 -3.42 16 3 C 0.08 2.01 5.26 85.56 0.45 2.46 16 4 N -0.51 -15.10 4.05 -909.91 -3.69 -18.78 16 5 C 0.08 2.23 4.88 85.56 0.42 2.65 16 6 C -0.13 -2.92 8.78 25.64 0.23 -2.70 16 7 C -0.19 -3.47 14.32 67.78 0.97 -2.50 16 8 C 0.13 4.73 3.94 85.56 0.34 5.06 16 9 C 0.36 15.49 7.06 137.94 0.97 16.46 16 10 N -0.51 -20.15 7.24 -179.53 -1.30 -21.45 16 11 C 0.14 5.32 6.63 39.65 0.26 5.59 16 12 C -0.12 -3.35 10.03 22.48 0.23 -3.13 16 13 C -0.07 -1.51 10.00 22.30 0.22 -1.29 16 14 C -0.14 -3.72 10.02 22.32 0.22 -3.50 16 15 C -0.07 -2.58 9.68 22.44 0.22 -2.37 16 16 C -0.24 -10.60 5.89 -19.96 -0.12 -10.72 16 17 C 0.47 25.11 5.87 86.44 0.51 25.62 16 18 O -0.56 -33.00 12.22 -4.40 -0.05 -33.05 16 19 N -0.39 -19.69 2.32 -460.24 -1.07 -20.76 16 20 C -0.38 -21.04 8.67 84.07 0.73 -20.32 16 21 H 0.11 6.02 7.24 -2.91 -0.02 6.00 16 22 C 0.08 4.50 4.84 84.98 0.41 4.92 16 23 N -0.86 -49.31 13.95 21.68 0.30 -49.01 16 24 Si 0.94 49.49 24.84 68.60 1.70 51.19 16 25 H -0.27 -15.47 6.28 99.48 0.62 -14.84 16 26 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.28 -15.13 7.11 99.48 0.71 -14.42 16 28 H 0.10 2.17 7.83 -2.91 -0.02 2.14 16 29 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.04 0.97 7.69 -2.39 -0.02 0.95 16 32 H 0.10 2.08 7.18 -2.39 -0.02 2.06 16 33 H 0.03 0.84 7.70 -2.38 -0.02 0.82 16 34 H 0.08 2.59 5.64 -2.39 -0.01 2.58 16 35 H 0.11 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.11 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.10 1.63 7.84 -2.92 -0.02 1.60 16 38 H 0.10 3.85 7.19 -2.39 -0.02 3.83 16 39 H 0.06 2.15 7.56 -2.39 -0.02 2.13 16 40 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.12 4.47 7.83 -2.91 -0.02 4.45 16 44 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -69.23 362.56 4.06 -65.17 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.91 Total: 17.28 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 7.25 Total: 9.41 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -5.76 Total: -109.99 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.70 Total: 51.19 kcal Total: -69.23 4.06 -65.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916638816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.389 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds