Wall clock time and date at job start Tue Mar 31 2020 14:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.64640 * 2 1 4 4 C 1.54327 * 110.87190 * 236.74951 * 2 1 3 5 5 N 1.47023 * 107.27496 * 219.37452 * 4 2 1 6 6 C 1.34774 * 125.64705 * 178.97754 * 5 4 2 7 7 O 1.21555 * 119.99876 * 354.24255 * 6 5 4 8 8 C 1.47877 * 119.99974 * 174.24672 * 6 5 4 9 9 C 1.40582 * 119.70288 * 335.04722 * 8 6 5 10 10 C 1.35813 * 120.73093 * 179.66802 * 9 8 6 11 11 C 1.40548 * 119.98665 * 0.64545 * 10 9 8 12 12 C 1.40823 * 121.13797 * 179.69615 * 11 10 9 13 13 C 1.36551 * 118.20030 * 179.97438 * 12 11 10 14 14 C 1.39423 * 119.93738 * 0.02562 * 13 12 11 15 15 N 1.31015 * 121.71437 * 359.97438 * 14 13 12 16 16 C 1.33743 * 121.35214 * 359.97438 * 15 14 13 17 17 C 1.38404 * 119.70993 * 155.32714 * 8 6 5 18 18 C 1.47420 * 108.70381 * 358.94383 * 5 4 2 19 19 C 1.54914 * 104.83087 * 24.12666 * 18 5 4 20 20 H 1.09002 * 111.00670 * 81.06615 * 19 18 5 21 21 N 1.46503 * 111.00267 * 204.88036 * 19 18 5 22 22 C 1.36942 * 119.99739 * 273.54788 * 21 19 18 23 23 H 1.07994 * 119.99975 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99588 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00286 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99676 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46787 * 89.99511 * 26 24 22 28 28 H 1.48496 * 109.46895 * 209.99475 * 26 24 22 29 29 H 1.48492 * 109.46990 * 329.99454 * 26 24 22 30 30 H 1.09000 * 109.46872 * 296.85806 * 1 2 3 31 31 H 1.08997 * 109.47336 * 56.85081 * 1 2 3 32 32 H 1.08997 * 109.47613 * 176.85780 * 1 2 3 33 33 H 1.08996 * 109.88203 * 338.79780 * 4 2 1 34 34 H 1.09007 * 109.87936 * 99.95581 * 4 2 1 35 35 H 1.07993 * 119.63488 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.00839 * 180.28104 * 10 9 8 37 37 H 1.07996 * 120.89740 * 359.96378 * 12 11 10 38 38 H 1.07997 * 120.03360 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.13844 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.23336 * 359.96801 * 17 8 6 41 41 H 1.09003 * 110.36778 * 265.29030 * 18 5 4 42 42 H 1.08997 * 110.36822 * 142.96027 * 18 5 4 43 43 H 0.96996 * 120.00465 * 93.54576 * 21 19 18 44 44 H 0.96999 * 119.99793 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7354 6 6 4.0003 -2.3786 -1.4845 7 8 3.6692 -2.6344 -2.6258 8 6 5.2268 -2.9798 -0.9180 9 6 5.8975 -2.3329 0.1347 10 6 7.0219 -2.8697 0.6751 11 6 7.5346 -4.0782 0.1731 12 6 8.7022 -4.6532 0.7109 13 6 9.1471 -5.8290 0.1778 14 6 8.4484 -6.4260 -0.8707 15 7 7.3624 -5.8886 -1.3689 16 6 6.8730 -4.7389 -0.8918 17 6 5.7076 -4.1712 -1.4326 18 6 3.4652 -1.2449 0.6913 19 6 2.0789 -0.7935 1.2151 20 1 1.4468 -1.6530 1.4383 21 7 2.2175 0.0718 2.3891 22 6 2.3125 -0.4798 3.6389 23 1 2.2848 -1.5527 3.7591 24 6 2.4433 0.3402 4.7513 25 7 2.4765 1.6478 4.6048 26 14 2.5721 -0.4123 6.4562 27 1 3.9997 -0.6614 6.7807 28 1 1.9933 0.5222 7.4547 29 1 1.8259 -1.6957 6.4885 30 1 -0.3633 0.4643 0.9168 31 1 -0.3634 0.5619 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3189 -1.4772 -1.5770 34 1 2.3774 -0.1015 -1.9964 35 1 5.5111 -1.4017 0.5217 36 1 7.5253 -2.3651 1.4865 37 1 9.2316 -4.1769 1.5229 38 1 10.0392 -6.2961 0.5680 39 1 8.8115 -7.3562 -1.2823 40 1 5.1900 -4.6613 -2.2440 41 1 4.1930 -0.4411 0.8029 42 1 3.7991 -2.1366 1.2217 43 1 2.2420 1.0354 2.2812 44 1 2.5682 2.2207 5.3821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939337935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:16 Heat of formation + Delta-G solvation = 24.383558 kcal Electronic energy + Delta-G solvation = -26835.803810 eV Core-core repulsion = 23138.631008 eV Total energy + Delta-G solvation = -3697.172802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05812 -41.11470 -39.10736 -37.79757 -35.89748 -34.50978 -34.09094 -32.59726 -31.64470 -31.11287 -29.21399 -27.84771 -26.04286 -25.38536 -24.86638 -23.23232 -23.04760 -21.43425 -21.06029 -19.48197 -19.09735 -18.13739 -17.90279 -17.44735 -17.32804 -16.53365 -16.27587 -15.66546 -15.56673 -15.36512 -15.32321 -15.00921 -14.76394 -14.59402 -14.54280 -14.15011 -14.05857 -13.89862 -13.33703 -13.11914 -12.99302 -12.92540 -12.83099 -12.73220 -12.51503 -12.17123 -12.05113 -11.98261 -11.70500 -11.59621 -11.40519 -11.23423 -10.90035 -10.52593 -9.91671 -9.76418 -9.34960 -9.02367 -7.92667 -5.22199 -0.80630 -0.38661 0.83145 1.38446 1.51314 1.52683 1.60169 1.78349 2.13592 2.57935 3.04300 3.11795 3.36941 3.40082 3.51373 3.65681 3.75246 3.80073 3.88888 3.95862 4.02240 4.02754 4.16415 4.23500 4.36922 4.46350 4.54506 4.55433 4.64925 4.69476 4.83452 4.84000 4.86799 4.87725 5.04865 5.06875 5.11201 5.12742 5.20870 5.31150 5.33467 5.45576 5.48341 5.57229 5.74771 6.27853 6.33829 6.87513 6.91908 7.36794 8.06512 8.32227 9.29786 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.003750 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.381998 B = 7465.537234 C = 9683.502175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.568 3.432 7 O -0.576 6.576 8 C -0.118 4.118 9 C -0.112 4.112 10 C -0.090 4.090 11 C -0.099 4.099 12 C -0.062 4.062 13 C -0.159 4.159 14 C 0.129 3.871 15 N -0.507 5.507 16 C 0.095 3.905 17 C -0.045 4.045 18 C 0.083 3.917 19 C 0.170 3.830 20 H 0.059 0.941 21 N -0.717 5.717 22 C -0.241 4.241 23 H 0.076 0.924 24 C -0.063 4.063 25 N -0.963 5.963 26 Si 0.964 3.036 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.273 1.273 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.193 0.807 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.379 0.621 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.964 -11.387 -8.469 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.358 3.642 7 O -0.458 6.458 8 C -0.123 4.123 9 C -0.130 4.130 10 C -0.108 4.108 11 C -0.102 4.102 12 C -0.087 4.087 13 C -0.178 4.178 14 C -0.044 4.044 15 N -0.215 5.215 16 C -0.025 4.025 17 C -0.065 4.065 18 C -0.043 4.043 19 C 0.059 3.941 20 H 0.077 0.923 21 N -0.356 5.356 22 C -0.373 4.373 23 H 0.094 0.906 24 C -0.256 4.256 25 N -0.613 5.613 26 Si 0.794 3.206 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.198 1.198 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.191 0.809 38 H 0.198 0.802 39 H 0.210 0.790 40 H 0.149 0.851 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.212 0.788 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.248 -11.992 -9.652 19.065 hybrid contribution 0.247 0.670 1.501 1.662 sum 11.495 -11.322 -8.151 18.076 Atomic orbital electron populations 1.21627 0.92592 1.02254 1.02249 1.22401 0.97532 0.99293 0.92895 0.89653 1.22089 0.87068 0.94443 0.96894 1.48364 1.29676 1.43483 1.12033 1.18210 0.83169 0.78202 0.84598 1.90730 1.72907 1.62617 1.19525 1.19752 0.96352 0.96959 0.99249 1.21615 0.95817 1.01177 0.94391 1.21263 0.95500 0.94154 0.99879 1.19248 0.97470 0.96654 0.96797 1.21977 0.92871 0.95233 0.98644 1.22420 1.02394 0.96044 0.96976 1.23724 0.88924 0.99474 0.92324 1.68015 1.14295 1.09853 1.29378 1.18801 0.95665 0.92894 0.95121 1.21101 0.93971 0.93576 0.97855 1.23516 1.01351 1.00584 0.78802 1.21519 0.92571 0.93481 0.86495 0.92293 1.42344 1.87059 1.05072 1.01125 1.19543 1.40955 0.92065 0.84723 0.90628 1.25416 1.03395 0.95691 1.01096 1.69790 1.58630 1.03138 1.29764 0.85286 0.77610 0.77300 0.80426 1.21243 1.22624 1.19804 0.93087 0.90688 0.92293 0.90831 0.90714 0.83533 0.81752 0.80894 0.80168 0.79038 0.85081 0.90665 0.90781 0.78830 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.17 71.98 0.66 -2.77 16 2 C -0.10 -2.99 3.16 -9.60 -0.03 -3.02 16 3 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 4 C 0.12 3.37 6.47 86.73 0.56 3.93 16 5 N -0.60 -19.23 3.33 -815.14 -2.71 -21.94 16 6 C 0.57 19.64 7.63 86.80 0.66 20.31 16 7 O -0.58 -23.00 16.89 -3.89 -0.07 -23.07 16 8 C -0.12 -3.67 5.66 -20.11 -0.11 -3.79 16 9 C -0.11 -3.01 7.97 22.28 0.18 -2.84 16 10 C -0.09 -2.00 9.74 22.27 0.22 -1.79 16 11 C -0.10 -2.25 5.75 -21.23 -0.12 -2.37 16 12 C -0.06 -0.91 9.89 22.51 0.22 -0.69 16 13 C -0.16 -1.86 10.03 22.16 0.22 -1.63 16 14 C 0.13 2.06 11.15 85.10 0.95 3.01 16 15 N -0.51 -12.83 10.34 -188.65 -1.95 -14.78 16 16 C 0.09 2.62 6.60 40.25 0.27 2.88 16 17 C -0.05 -1.40 9.55 22.85 0.22 -1.18 16 18 C 0.08 2.68 4.68 86.86 0.41 3.09 16 19 C 0.17 6.06 3.13 46.39 0.15 6.20 16 20 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 21 N -0.72 -32.14 5.28 -316.35 -1.67 -33.81 16 22 C -0.24 -12.16 9.98 84.03 0.84 -11.33 16 23 H 0.08 3.70 7.83 -2.91 -0.02 3.67 16 24 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 25 N -0.96 -54.86 13.06 21.65 0.28 -54.57 16 26 Si 0.96 43.21 29.55 68.60 2.03 45.23 16 27 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.07 2.06 7.78 -2.39 -0.02 2.05 16 34 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.15 3.94 4.56 -2.91 -0.01 3.92 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.13 4.25 7.80 -2.91 -0.02 4.23 16 41 H 0.08 2.47 6.79 -2.39 -0.02 2.45 16 42 H 0.07 2.43 6.84 -2.39 -0.02 2.41 16 43 H 0.38 18.30 7.71 -92.71 -0.72 17.59 16 44 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -68.54 364.19 1.98 -66.56 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.32 Total: 31.20 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.75 Total: 5.16 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -6.05 Total: -125.10 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.07 Total: -23.07 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.54 1.98 -66.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939337935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.948 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds