Wall clock time and date at job start Tue Mar 31 2020 14:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.88273 * 2 1 4 4 C 1.54904 * 111.00695 * 236.11775 * 2 1 3 5 5 N 1.47420 * 104.83586 * 204.87625 * 4 2 1 6 6 C 1.34778 * 125.64970 * 204.08928 * 5 4 2 7 7 O 1.21557 * 120.00222 * 5.40758 * 6 5 4 8 8 C 1.47772 * 119.99875 * 185.13015 * 6 5 4 9 9 C 1.40655 * 119.69960 * 220.91648 * 8 6 5 10 10 C 1.35842 * 120.87298 * 179.70663 * 9 8 6 11 11 C 1.40393 * 119.84857 * 0.56287 * 10 9 8 12 12 C 1.40641 * 121.97218 * 179.69875 * 11 10 9 13 13 C 1.36223 * 118.72951 * 180.02562 * 12 11 10 14 14 N 1.32590 * 121.89783 * 359.97438 * 13 12 11 15 15 C 1.31238 * 122.74814 * 359.97438 * 14 13 12 16 16 C 1.40551 * 119.88339 * 0.02562 * 15 14 13 17 17 C 1.38572 * 119.69817 * 41.19088 * 8 6 5 18 18 C 1.47023 * 108.70029 * 24.35730 * 5 4 2 19 19 C 1.54339 * 107.26744 * 358.58477 * 18 5 4 20 20 H 1.08998 * 110.66646 * 96.52304 * 19 18 5 21 21 N 1.46499 * 110.84729 * 219.67289 * 19 18 5 22 22 C 1.36936 * 119.99941 * 268.68746 * 21 19 18 23 23 H 1.07999 * 120.00249 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99544 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00174 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99757 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47116 * 89.99739 * 26 24 22 28 28 H 1.48497 * 109.47099 * 210.00042 * 26 24 22 29 29 H 1.48502 * 109.47089 * 330.00172 * 26 24 22 30 30 H 1.08999 * 109.47074 * 182.42924 * 1 2 3 31 31 H 1.09002 * 109.47349 * 302.42618 * 1 2 3 32 32 H 1.09003 * 109.47468 * 62.42794 * 1 2 3 33 33 H 1.09007 * 110.36827 * 86.03390 * 4 2 1 34 34 H 1.09005 * 110.45975 * 323.76456 * 4 2 1 35 35 H 1.08001 * 119.55667 * 359.97438 * 9 8 6 36 36 H 1.08007 * 120.07666 * 180.28205 * 10 9 8 37 37 H 1.07994 * 120.63149 * 0.04837 * 12 11 10 38 38 H 1.08000 * 119.04943 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.06129 * 179.97438 * 15 14 13 40 40 H 1.07994 * 120.34564 * 0.02562 * 17 8 6 41 41 H 1.09003 * 109.88460 * 118.13104 * 18 5 4 42 42 H 1.08996 * 109.88207 * 239.29152 * 18 5 4 43 43 H 0.96997 * 119.99729 * 88.69500 * 21 19 18 44 44 H 0.97001 * 119.99724 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4275 -1.2419 -0.7741 6 6 4.4479 -1.5599 -1.5952 7 8 4.3332 -1.4049 -2.7954 8 6 5.7083 -2.0911 -1.0359 9 6 6.9400 -1.6566 -1.5578 10 6 8.1131 -2.1247 -1.0577 11 6 8.1026 -3.0637 -0.0140 12 6 9.2898 -3.5826 0.5329 13 6 9.2026 -4.4912 1.5441 14 7 8.0345 -4.8961 2.0233 15 6 6.8871 -4.4551 1.5635 16 6 6.8661 -3.5144 0.5194 17 6 5.6659 -3.0171 -0.0059 18 6 3.4666 -1.2784 0.6951 19 6 2.0869 -0.8077 1.2020 20 1 1.4464 -1.6616 1.4228 21 7 2.2294 0.0497 2.3813 22 6 2.2014 -0.5003 3.6351 23 1 2.0747 -1.5662 3.7545 24 6 2.3359 0.3122 4.7525 25 7 2.4899 1.6113 4.6069 26 14 2.2985 -0.4381 6.4628 27 1 3.6776 -0.8065 6.8720 28 1 1.7437 0.5485 7.4240 29 1 1.4443 -1.6528 6.4518 30 1 -0.3633 -1.0267 0.0436 31 1 -0.3634 0.5510 0.8674 32 1 -0.3634 0.4757 -0.9110 33 1 2.1553 -0.1714 -2.0839 34 1 1.4528 -1.6703 -1.4044 35 1 6.9533 -0.9379 -2.3639 36 1 9.0517 -1.7789 -1.4651 37 1 10.2522 -3.2664 0.1586 38 1 10.1111 -4.8927 1.9681 39 1 5.9607 -4.8150 1.9860 40 1 4.7177 -3.3515 0.3884 41 1 3.6616 -2.2954 1.0357 42 1 4.2430 -0.6072 1.0621 43 1 2.3435 1.0069 2.2740 44 1 2.5835 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939468505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:20 Heat of formation + Delta-G solvation = 37.892874 kcal Electronic energy + Delta-G solvation = -27017.963188 eV Core-core repulsion = 23321.376193 eV Total energy + Delta-G solvation = -3696.586994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06835 -39.88063 -37.87026 -36.90831 -34.18413 -33.37427 -32.43895 -31.38970 -30.79464 -29.90509 -27.65020 -26.48889 -24.78282 -24.09832 -23.72117 -22.51914 -21.62678 -20.04247 -19.93058 -18.12701 -17.45775 -17.22622 -16.86349 -16.25276 -15.81541 -15.43447 -15.05746 -14.73227 -14.38698 -14.30158 -14.02145 -13.71974 -13.63285 -13.57185 -13.13908 -13.03947 -12.69143 -12.48180 -12.20250 -12.11283 -12.02692 -11.63324 -11.41600 -11.17331 -11.05448 -10.79370 -10.65367 -10.37043 -10.29030 -10.06936 -9.99423 -9.78153 -9.60362 -9.25513 -9.05099 -8.46372 -8.23305 -7.15103 -5.90018 -3.21213 0.08423 0.61033 1.65634 2.49261 2.98647 3.24016 3.36514 3.42292 3.43697 3.90975 4.22621 4.28591 4.43967 4.51052 4.54389 4.63879 4.83957 4.88011 4.98364 5.06697 5.09454 5.16939 5.39054 5.46382 5.52731 5.56451 5.60140 5.65494 5.70857 5.75813 5.79855 5.85910 5.93795 6.07548 6.13018 6.15966 6.20370 6.30293 6.41911 6.43680 6.46950 6.55422 6.57864 6.79849 7.57447 7.65395 7.79672 8.18969 8.27201 9.39345 9.92380 10.27039 11.31752 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.004446 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.007890 B = 6296.826098 C = 8744.513673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.113 3.887 5 N -0.606 5.606 6 C 0.570 3.430 7 O -0.546 6.546 8 C -0.119 4.119 9 C -0.051 4.051 10 C -0.120 4.120 11 C -0.010 4.010 12 C -0.162 4.162 13 C 0.082 3.918 14 N -0.492 5.492 15 C 0.160 3.840 16 C -0.119 4.119 17 C -0.044 4.044 18 C 0.066 3.934 19 C 0.177 3.823 20 H 0.070 0.930 21 N -0.710 5.710 22 C -0.250 4.250 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.387 0.613 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 -8.775 -11.108 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.338 5.338 6 C 0.359 3.641 7 O -0.425 6.425 8 C -0.122 4.122 9 C -0.071 4.071 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.181 4.181 13 C -0.061 4.061 14 N -0.200 5.200 15 C -0.011 4.011 16 C -0.121 4.121 17 C -0.064 4.064 18 C -0.060 4.060 19 C 0.065 3.935 20 H 0.088 0.912 21 N -0.349 5.349 22 C -0.381 4.381 23 H 0.091 0.909 24 C -0.203 4.203 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.221 0.779 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.138 -9.398 -10.902 16.535 hybrid contribution 0.249 0.646 0.372 0.786 sum 8.387 -8.752 -10.530 16.057 Atomic orbital electron populations 1.21594 0.93750 1.01848 1.01809 1.22660 0.96419 0.99850 0.94552 0.89817 1.22307 0.82269 0.98334 0.98038 1.48451 1.11981 1.65188 1.08196 1.17918 0.82637 0.77936 0.85632 1.90763 1.82271 1.54870 1.14603 1.19890 0.93881 1.00206 0.98240 1.20895 0.90596 0.97739 0.97878 1.20836 0.98636 0.97627 0.96728 1.18273 0.92831 0.95296 0.95107 1.21902 0.98139 0.99293 0.98800 1.22237 0.95793 0.94426 0.93650 1.67474 0.98392 1.25824 1.28321 1.23342 0.96758 0.90519 0.90515 1.18965 0.93489 1.00289 0.99342 1.21695 0.97890 0.94230 0.92581 1.23617 1.03753 1.01333 0.77275 1.21263 0.91406 0.93908 0.86956 0.91207 1.42359 1.86225 1.06225 1.00105 1.19230 1.43156 0.92578 0.83149 0.90931 1.24757 1.02126 0.95403 0.97980 1.69658 1.55786 1.02860 1.29225 0.86218 0.77718 0.78020 0.84387 1.21572 1.21695 1.20578 0.92774 0.91366 0.93180 0.90742 0.91398 0.84738 0.84603 0.84398 0.82992 0.81560 0.83651 0.91931 0.90640 0.77854 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.30 37.16 0.35 -1.42 16 2 C -0.11 -1.72 3.27 -88.48 -0.29 -2.01 16 3 H 0.08 1.35 8.01 -51.93 -0.42 0.94 16 4 C 0.11 1.60 6.40 -2.53 -0.02 1.58 16 5 N -0.61 -9.29 3.32 -171.65 -0.57 -9.86 16 6 C 0.57 9.13 7.42 -12.36 -0.09 9.04 16 7 O -0.55 -10.10 17.15 5.32 0.09 -10.01 16 8 C -0.12 -1.67 5.47 -104.96 -0.57 -2.24 16 9 C -0.05 -0.64 9.53 -39.53 -0.38 -1.01 16 10 C -0.12 -1.30 9.77 -39.63 -0.39 -1.69 16 11 C -0.01 -0.12 5.75 -106.74 -0.61 -0.73 16 12 C -0.16 -1.61 9.87 -39.40 -0.39 -2.00 16 13 C 0.08 0.87 11.07 -17.95 -0.20 0.67 16 14 N -0.49 -6.26 10.30 -13.12 -0.14 -6.39 16 15 C 0.16 1.93 11.05 -16.93 -0.19 1.74 16 16 C -0.12 -1.49 5.74 -106.87 -0.61 -2.10 16 17 C -0.04 -0.56 8.22 -38.74 -0.32 -0.88 16 18 C 0.07 1.06 5.56 -3.06 -0.02 1.04 16 19 C 0.18 3.10 3.08 -66.09 -0.20 2.90 16 20 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 21 N -0.71 -16.02 5.15 -51.64 -0.27 -16.29 16 22 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 26 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.06 7.99 -51.93 -0.41 0.64 16 34 H 0.07 0.87 8.04 -51.93 -0.42 0.46 16 35 H 0.13 1.55 8.05 -52.49 -0.42 1.13 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.15 1.68 5.70 -52.49 -0.30 1.38 16 41 H 0.06 0.91 5.52 -51.93 -0.29 0.63 16 42 H 0.08 1.38 8.03 -51.93 -0.42 0.97 16 43 H 0.39 9.49 7.76 -40.82 -0.32 9.18 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -31.25 366.62 -9.74 -40.99 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.91 Total: 9.51 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.18 Total: -3.87 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.25 Total: -58.40 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.25 -9.74 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939468505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.881 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds