Wall clock time and date at job start Tue Mar 31 2020 14:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.88273 * 2 1 4 4 C 1.54904 * 111.00695 * 236.11775 * 2 1 3 5 5 N 1.47420 * 104.83586 * 204.87625 * 4 2 1 6 6 C 1.34778 * 125.64970 * 204.08928 * 5 4 2 7 7 O 1.21557 * 120.00222 * 5.40758 * 6 5 4 8 8 C 1.47772 * 119.99875 * 185.13015 * 6 5 4 9 9 C 1.40655 * 119.69960 * 220.91648 * 8 6 5 10 10 C 1.35842 * 120.87298 * 179.70663 * 9 8 6 11 11 C 1.40393 * 119.84857 * 0.56287 * 10 9 8 12 12 C 1.40641 * 121.97218 * 179.69875 * 11 10 9 13 13 C 1.36223 * 118.72951 * 180.02562 * 12 11 10 14 14 N 1.32590 * 121.89783 * 359.97438 * 13 12 11 15 15 C 1.31238 * 122.74814 * 359.97438 * 14 13 12 16 16 C 1.40551 * 119.88339 * 0.02562 * 15 14 13 17 17 C 1.38572 * 119.69817 * 41.19088 * 8 6 5 18 18 C 1.47023 * 108.70029 * 24.35730 * 5 4 2 19 19 C 1.54339 * 107.26744 * 358.58477 * 18 5 4 20 20 H 1.08998 * 110.66646 * 96.52304 * 19 18 5 21 21 N 1.46499 * 110.84729 * 219.67289 * 19 18 5 22 22 C 1.36936 * 119.99941 * 268.68746 * 21 19 18 23 23 H 1.07999 * 120.00249 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99544 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00174 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99757 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47116 * 89.99739 * 26 24 22 28 28 H 1.48497 * 109.47099 * 210.00042 * 26 24 22 29 29 H 1.48502 * 109.47089 * 330.00172 * 26 24 22 30 30 H 1.08999 * 109.47074 * 182.42924 * 1 2 3 31 31 H 1.09002 * 109.47349 * 302.42618 * 1 2 3 32 32 H 1.09003 * 109.47468 * 62.42794 * 1 2 3 33 33 H 1.09007 * 110.36827 * 86.03390 * 4 2 1 34 34 H 1.09005 * 110.45975 * 323.76456 * 4 2 1 35 35 H 1.08001 * 119.55667 * 359.97438 * 9 8 6 36 36 H 1.08007 * 120.07666 * 180.28205 * 10 9 8 37 37 H 1.07994 * 120.63149 * 0.04837 * 12 11 10 38 38 H 1.08000 * 119.04943 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.06129 * 179.97438 * 15 14 13 40 40 H 1.07994 * 120.34564 * 0.02562 * 17 8 6 41 41 H 1.09003 * 109.88460 * 118.13104 * 18 5 4 42 42 H 1.08996 * 109.88207 * 239.29152 * 18 5 4 43 43 H 0.96997 * 119.99729 * 88.69500 * 21 19 18 44 44 H 0.97001 * 119.99724 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4275 -1.2419 -0.7741 6 6 4.4479 -1.5599 -1.5952 7 8 4.3332 -1.4049 -2.7954 8 6 5.7083 -2.0911 -1.0359 9 6 6.9400 -1.6566 -1.5578 10 6 8.1131 -2.1247 -1.0577 11 6 8.1026 -3.0637 -0.0140 12 6 9.2898 -3.5826 0.5329 13 6 9.2026 -4.4912 1.5441 14 7 8.0345 -4.8961 2.0233 15 6 6.8871 -4.4551 1.5635 16 6 6.8661 -3.5144 0.5194 17 6 5.6659 -3.0171 -0.0059 18 6 3.4666 -1.2784 0.6951 19 6 2.0869 -0.8077 1.2020 20 1 1.4464 -1.6616 1.4228 21 7 2.2294 0.0497 2.3813 22 6 2.2014 -0.5003 3.6351 23 1 2.0747 -1.5662 3.7545 24 6 2.3359 0.3122 4.7525 25 7 2.4899 1.6113 4.6069 26 14 2.2985 -0.4381 6.4628 27 1 3.6776 -0.8065 6.8720 28 1 1.7437 0.5485 7.4240 29 1 1.4443 -1.6528 6.4518 30 1 -0.3633 -1.0267 0.0436 31 1 -0.3634 0.5510 0.8674 32 1 -0.3634 0.4757 -0.9110 33 1 2.1553 -0.1714 -2.0839 34 1 1.4528 -1.6703 -1.4044 35 1 6.9533 -0.9379 -2.3639 36 1 9.0517 -1.7789 -1.4651 37 1 10.2522 -3.2664 0.1586 38 1 10.1111 -4.8927 1.9681 39 1 5.9607 -4.8150 1.9860 40 1 4.7177 -3.3515 0.3884 41 1 3.6616 -2.2954 1.0357 42 1 4.2430 -0.6072 1.0621 43 1 2.3435 1.0069 2.2740 44 1 2.5835 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939468505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:19 Heat of formation + Delta-G solvation = 19.518446 kcal Electronic energy + Delta-G solvation = -27018.759963 eV Core-core repulsion = 23321.376193 eV Total energy + Delta-G solvation = -3697.383769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02245 -41.05351 -39.12864 -37.94501 -35.88435 -34.43887 -33.66534 -32.53441 -32.27496 -30.82417 -29.19722 -27.60609 -26.06025 -25.46354 -24.79023 -23.46822 -22.92968 -21.41241 -21.08076 -19.10445 -19.08727 -18.51131 -17.89177 -17.41334 -17.04055 -16.52024 -16.40175 -15.91343 -15.64951 -15.36819 -15.24542 -15.03823 -14.88666 -14.51327 -14.44053 -14.20974 -14.08478 -13.70585 -13.43860 -13.11358 -12.99189 -12.91468 -12.84658 -12.83081 -12.37413 -12.17724 -12.14181 -12.02688 -11.66650 -11.44454 -11.26019 -11.20796 -10.89821 -10.51343 -10.21031 -9.72723 -9.13688 -9.03079 -7.93176 -5.22604 -0.81149 -0.31615 0.76177 1.42280 1.50825 1.51605 1.59186 1.81677 2.16896 2.57680 3.01896 3.21592 3.38887 3.41801 3.52924 3.66200 3.73075 3.77421 3.84365 3.87963 3.96994 4.05206 4.23492 4.30126 4.34243 4.44707 4.59515 4.62064 4.64714 4.67748 4.74723 4.81545 4.88182 4.89665 4.93443 5.07467 5.13553 5.16040 5.25742 5.30527 5.34190 5.49733 5.57251 5.58147 5.70192 6.27025 6.37913 6.94136 6.94900 7.35384 8.06822 8.30214 9.29903 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.004446 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.007890 B = 6296.826098 C = 8744.513673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 H 0.068 0.932 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.571 3.429 7 O -0.575 6.575 8 C -0.139 4.139 9 C -0.069 4.069 10 C -0.107 4.107 11 C -0.026 4.026 12 C -0.153 4.153 13 C 0.070 3.930 14 N -0.513 5.513 15 C 0.148 3.852 16 C -0.133 4.133 17 C -0.044 4.044 18 C 0.081 3.919 19 C 0.171 3.829 20 H 0.079 0.921 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.084 0.916 24 C -0.069 4.069 25 N -0.968 5.968 26 Si 0.964 3.036 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.265 1.265 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.152 0.848 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.374 0.626 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -10.481 -11.642 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 H 0.086 0.914 4 C -0.007 4.007 5 N -0.337 5.337 6 C 0.361 3.639 7 O -0.456 6.456 8 C -0.142 4.142 9 C -0.089 4.089 10 C -0.124 4.124 11 C -0.032 4.032 12 C -0.172 4.172 13 C -0.072 4.072 14 N -0.222 5.222 15 C -0.023 4.023 16 C -0.135 4.135 17 C -0.064 4.064 18 C -0.044 4.044 19 C 0.061 3.939 20 H 0.097 0.903 21 N -0.359 5.359 22 C -0.369 4.369 23 H 0.102 0.898 24 C -0.261 4.261 25 N -0.619 5.619 26 Si 0.794 3.206 27 H -0.219 1.219 28 H -0.228 1.228 29 H -0.190 1.190 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.187 0.813 37 H 0.190 0.810 38 H 0.197 0.803 39 H 0.199 0.801 40 H 0.169 0.831 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.206 0.794 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.081 -11.157 -11.466 18.395 hybrid contribution 0.025 1.112 0.462 1.204 sum 9.106 -10.045 -11.004 17.462 Atomic orbital electron populations 1.21552 0.92172 1.02707 1.01981 1.22557 0.97641 0.98713 0.93643 0.91403 1.22379 0.81931 0.98981 0.97385 1.48458 1.12505 1.65025 1.07701 1.18230 0.83126 0.77339 0.85244 1.90737 1.82814 1.56332 1.15728 1.19883 0.93541 1.01409 0.99387 1.21026 0.90732 0.98564 0.98555 1.21166 0.99345 0.96296 0.95638 1.18637 0.93362 0.95649 0.95515 1.22263 0.98896 0.98172 0.97893 1.22767 0.96095 0.94513 0.93839 1.67503 0.99196 1.26459 1.29002 1.23608 0.97422 0.90642 0.90628 1.19115 0.93840 1.00743 0.99784 1.21727 0.98473 0.93960 0.92249 1.23249 1.01765 1.01634 0.77777 1.21477 0.92316 0.93881 0.86266 0.90337 1.42486 1.86404 1.06133 1.00895 1.19643 1.40135 0.92986 0.84153 0.89818 1.25464 1.03565 0.95793 1.01302 1.69808 1.58497 1.04126 1.29421 0.85277 0.77459 0.77440 0.80426 1.21882 1.22765 1.18981 0.91328 0.93483 0.90941 0.90649 0.89302 0.84427 0.81288 0.80956 0.80289 0.80133 0.83068 0.90167 0.93093 0.79375 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.30 71.98 0.67 -2.52 16 2 C -0.11 -3.08 3.27 -9.40 -0.03 -3.11 16 3 H 0.07 2.21 8.01 -2.38 -0.02 2.19 16 4 C 0.12 3.10 6.40 86.85 0.56 3.66 16 5 N -0.61 -18.17 3.32 -815.26 -2.71 -20.88 16 6 C 0.57 18.13 7.42 86.76 0.64 18.77 16 7 O -0.57 -21.20 17.15 -3.89 -0.07 -21.27 16 8 C -0.14 -3.85 5.47 -20.09 -0.11 -3.96 16 9 C -0.07 -1.66 9.53 22.30 0.21 -1.45 16 10 C -0.11 -2.08 9.77 22.24 0.22 -1.87 16 11 C -0.03 -0.57 5.75 -21.24 -0.12 -0.69 16 12 C -0.15 -2.59 9.87 22.39 0.22 -2.37 16 13 C 0.07 1.32 11.07 84.11 0.93 2.25 16 14 N -0.51 -12.27 10.30 -195.41 -2.01 -14.28 16 15 C 0.15 3.41 11.05 85.35 0.94 4.35 16 16 C -0.13 -3.19 5.74 -21.32 -0.12 -3.31 16 17 C -0.04 -1.09 8.22 22.81 0.19 -0.91 16 18 C 0.08 2.57 5.56 86.73 0.48 3.06 16 19 C 0.17 5.87 3.08 46.19 0.14 6.01 16 20 H 0.08 2.59 7.96 -2.39 -0.02 2.57 16 21 N -0.72 -32.76 5.15 -317.31 -1.64 -34.39 16 22 C -0.24 -11.99 9.96 84.03 0.84 -11.16 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 25 N -0.97 -56.79 13.06 21.65 0.28 -56.51 16 26 Si 0.96 43.95 29.55 68.60 2.03 45.98 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 30 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.06 7.99 -2.38 -0.02 2.04 16 34 H 0.09 2.06 8.04 -2.38 -0.02 2.04 16 35 H 0.14 3.12 8.05 -2.91 -0.02 3.10 16 36 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.15 3.39 5.70 -2.91 -0.02 3.37 16 41 H 0.08 2.26 5.52 -2.39 -0.01 2.24 16 42 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 43 H 0.37 18.85 7.76 -92.71 -0.72 18.13 16 44 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -68.02 366.62 2.32 -65.71 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.31 Total: 32.14 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.12 Total: 3.52 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -6.08 Total: -126.07 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.07 Total: -21.27 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.02 2.32 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939468505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.225 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds