Wall clock time and date at job start Tue Mar 31 2020 15:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21557 * 120.00115 * 359.97438 * 5 4 2 7 7 C 1.47770 * 119.99728 * 179.97438 * 5 4 2 8 8 C 1.40626 * 119.80827 * 359.72919 * 7 5 4 9 9 C 1.35701 * 120.92343 * 179.77322 * 8 7 5 10 10 C 1.40756 * 120.11144 * 0.47121 * 9 8 7 11 11 N 1.33652 * 120.82850 * 179.78248 * 10 9 8 12 12 C 1.31116 * 121.39087 * 180.02562 * 11 10 9 13 13 C 1.39314 * 121.76905 * 0.02562 * 12 11 10 14 14 C 1.36579 * 119.90901 * 359.97438 * 13 12 11 15 15 C 1.40892 * 118.15561 * 0.02562 * 14 13 12 16 16 C 1.38551 * 119.80355 * 179.97438 * 7 5 4 17 17 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 18 18 C 1.53497 * 114.20590 * 174.71570 * 17 2 1 19 19 N 1.47063 * 87.98756 * 220.34354 * 18 17 2 20 20 C 1.36933 * 136.06152 * 207.08176 * 19 18 17 21 21 H 1.08001 * 119.99949 * 6.49131 * 20 19 18 22 22 C 1.38805 * 120.00422 * 186.49224 * 20 19 18 23 23 N 1.31621 * 119.99799 * 6.27156 * 22 20 19 24 24 Si 1.86798 * 120.00357 * 186.27268 * 22 20 19 25 25 H 1.48507 * 109.47008 * 265.00931 * 24 22 20 26 26 H 1.48498 * 109.47125 * 25.00956 * 24 22 20 27 27 H 1.48499 * 109.47537 * 145.01308 * 24 22 20 28 28 C 1.47070 * 87.88273 * 27.34326 * 19 18 17 29 29 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 30 30 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 31 31 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 32 32 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 33 33 H 1.08010 * 119.53435 * 359.97438 * 8 7 5 34 34 H 1.08010 * 119.94236 * 180.25794 * 9 8 7 35 35 H 1.08002 * 119.11574 * 180.02562 * 12 11 10 36 36 H 1.08004 * 120.04639 * 179.97438 * 13 12 11 37 37 H 1.07993 * 120.92404 * 179.97438 * 14 13 12 38 38 H 1.07999 * 120.29938 * 0.02562 * 16 7 5 39 39 H 1.08994 * 113.41243 * 307.91400 * 17 2 1 40 40 H 1.09000 * 113.46682 * 105.56058 * 18 17 2 41 41 H 1.09008 * 113.52408 * 335.13690 * 18 17 2 42 42 H 0.97005 * 119.99736 * 179.97438 * 23 22 20 43 43 H 1.09006 * 113.46411 * 87.43633 * 28 19 18 44 44 H 1.09003 * 113.46855 * 217.87664 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1612 2.4116 7 6 2.6392 -0.7152 3.5637 8 6 2.9667 -2.0812 3.4974 9 6 3.4249 -2.7423 4.5903 10 6 3.5698 -2.0653 5.8158 11 7 4.0156 -2.7034 6.9022 12 6 4.1543 -2.0839 8.0494 13 6 3.8449 -0.7334 8.1958 14 6 3.3841 -0.0205 7.1258 15 6 3.2364 -0.6897 5.8948 16 6 2.7705 -0.0200 4.7549 17 6 2.0399 -0.7212 -1.2494 18 6 3.5641 -0.6739 -1.4253 19 7 3.3395 -0.4640 -2.8634 20 6 4.0309 -0.7208 -4.0172 21 1 4.9487 -1.2889 -3.9816 22 6 3.5522 -0.2509 -5.2324 23 7 2.5037 0.5440 -5.2637 24 14 4.3961 -0.7468 -6.8234 25 1 5.3782 0.2983 -7.2094 26 1 5.1001 -2.0397 -6.6283 27 1 3.3812 -0.8930 -7.8975 28 6 2.0485 0.1492 -2.5168 29 1 -0.3634 -1.0240 0.0874 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4362 -0.9304 32 1 2.2491 -1.6318 1.1524 33 1 2.8549 -2.6107 2.5626 34 1 3.6756 -3.7905 4.5204 35 1 4.5182 -2.6352 8.9038 36 1 3.9693 -0.2509 9.1540 37 1 3.1389 1.0269 7.2209 38 1 2.5145 1.0280 4.8053 39 1 1.6048 -1.7111 -1.3859 40 1 4.0570 -1.6187 -1.1962 41 1 4.0330 0.1767 -0.9304 42 1 2.1694 0.8726 -6.1130 43 1 2.1169 1.2171 -2.3095 44 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970364923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:14 Heat of formation + Delta-G solvation = 75.896094 kcal Electronic energy + Delta-G solvation = -26075.213617 eV Core-core repulsion = 22380.274566 eV Total energy + Delta-G solvation = -3694.939051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22709 -39.89108 -38.31928 -36.93181 -34.95709 -33.85896 -32.31066 -31.47908 -30.42370 -29.95274 -27.54742 -25.43298 -24.50304 -24.20292 -23.96406 -22.51355 -21.61187 -20.64932 -19.51804 -18.40906 -17.94360 -17.27417 -16.77148 -16.11284 -15.91768 -15.08806 -14.88185 -14.75664 -14.59329 -14.41562 -14.22157 -13.99257 -13.75229 -13.59942 -13.43305 -13.21056 -12.45689 -12.31265 -12.17923 -11.88529 -11.79180 -11.63702 -11.39061 -11.25640 -10.97240 -10.92641 -10.73483 -10.38690 -10.16313 -9.89811 -9.87869 -9.74853 -9.24102 -9.19795 -8.91620 -8.78972 -8.60508 -6.89888 -5.80247 -3.11194 -0.10491 0.31729 1.57086 2.17359 3.14755 3.19649 3.38099 3.43008 3.45379 3.79740 3.87534 4.21148 4.30787 4.43879 4.45804 4.54217 4.66548 4.76906 4.83814 5.08527 5.12294 5.18274 5.36719 5.38892 5.52018 5.52914 5.58593 5.64920 5.66259 5.78800 5.89419 5.95031 5.96989 6.06183 6.12206 6.25512 6.36493 6.38747 6.42744 6.55263 6.63018 6.76616 7.16270 7.31981 7.50227 7.50283 7.57097 7.94989 8.23253 9.01731 9.68207 10.62787 11.38591 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.002239 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.404966 B =12500.436644 C =13113.857514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.090 0.910 4 N -0.711 5.711 5 C 0.556 3.444 6 O -0.539 6.539 7 C -0.128 4.128 8 C -0.073 4.073 9 C -0.098 4.098 10 C 0.141 3.859 11 N -0.478 5.478 12 C 0.138 3.862 13 C -0.182 4.182 14 C -0.045 4.045 15 C -0.114 4.114 16 C -0.028 4.028 17 C -0.156 4.156 18 C 0.124 3.876 19 N -0.610 5.610 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.280 1.280 27 H -0.289 1.289 28 C 0.176 3.824 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.398 0.602 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.254 0.746 43 H 0.031 0.969 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -4.800 26.814 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.108 0.892 4 N -0.361 5.361 5 C 0.343 3.657 6 O -0.417 6.417 7 C -0.131 4.131 8 C -0.093 4.093 9 C -0.116 4.116 10 C 0.020 3.980 11 N -0.186 5.186 12 C -0.034 4.034 13 C -0.202 4.202 14 C -0.071 4.071 15 C -0.116 4.116 16 C -0.048 4.048 17 C -0.176 4.176 18 C -0.002 4.002 19 N -0.335 5.335 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.216 1.216 28 C 0.049 3.951 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.111 0.889 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.216 -4.858 26.233 26.707 hybrid contribution 0.448 0.355 -0.780 0.967 sum -0.768 -4.504 25.454 25.861 Atomic orbital electron populations 1.22115 0.95272 1.01752 1.02510 1.21065 0.93864 0.97444 0.82662 0.89236 1.46069 1.66366 1.14081 1.09629 1.18146 0.77959 0.86538 0.83107 1.90775 1.50541 1.15398 1.84987 1.20057 1.04020 0.94419 0.94634 1.21011 0.96199 0.93110 0.99027 1.20692 0.99926 1.00763 0.90251 1.19019 0.95714 0.89986 0.93277 1.68082 1.13140 1.38389 0.98989 1.23046 0.93154 0.92083 0.95139 1.21911 1.02010 0.96003 1.00270 1.21589 0.93913 1.00340 0.91295 1.18817 1.02889 0.94826 0.95056 1.21460 0.93038 1.00255 0.90004 1.23725 0.98124 1.00904 0.94818 1.22371 0.92832 0.97859 0.87168 1.45667 1.19059 1.69371 0.99439 1.18939 1.05191 1.27986 0.82563 0.90121 1.24838 0.98756 0.99119 0.97765 1.69847 1.25897 1.35983 1.24840 0.86095 0.78368 0.78064 0.83196 1.21603 1.20510 1.21563 1.21947 0.90112 0.93675 0.89339 0.92726 0.92709 0.90952 0.76657 0.84624 0.84062 0.82241 0.84278 0.83980 0.83641 0.88889 0.94468 0.95158 0.93583 0.95158 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.47 37.16 0.35 -1.81 16 2 C 0.15 2.32 2.34 -67.93 -0.16 2.16 16 3 H 0.09 1.56 7.43 -51.93 -0.39 1.18 16 4 N -0.71 -9.06 4.91 -54.78 -0.27 -9.33 16 5 C 0.56 7.67 7.73 -12.36 -0.10 7.58 16 6 O -0.54 -9.24 15.97 5.32 0.08 -9.15 16 7 C -0.13 -1.46 5.87 -104.98 -0.62 -2.07 16 8 C -0.07 -0.69 9.44 -39.59 -0.37 -1.06 16 9 C -0.10 -0.94 9.95 -39.54 -0.39 -1.33 16 10 C 0.14 1.51 6.61 -84.78 -0.56 0.95 16 11 N -0.48 -4.91 10.33 -10.92 -0.11 -5.03 16 12 C 0.14 1.01 11.15 -17.46 -0.19 0.82 16 13 C -0.18 -1.11 10.03 -39.78 -0.40 -1.51 16 14 C -0.05 -0.34 9.89 -39.18 -0.39 -0.72 16 15 C -0.11 -1.13 5.74 -106.82 -0.61 -1.75 16 16 C -0.03 -0.30 9.35 -38.74 -0.36 -0.66 16 17 C -0.16 -2.72 3.52 -89.97 -0.32 -3.03 16 18 C 0.12 2.50 8.14 -8.52 -0.07 2.43 16 19 N -0.61 -15.67 3.76 -184.61 -0.69 -16.36 16 20 C -0.22 -6.19 10.73 -15.06 -0.16 -6.35 16 21 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.42 11.80 55.49 0.65 -26.77 16 24 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.18 4.04 6.79 -8.38 -0.06 3.98 16 29 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 4.08 6.59 -40.82 -0.27 3.81 16 33 H 0.14 0.96 6.35 -52.48 -0.33 0.63 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.43 8.06 -52.48 -0.42 0.00 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.15 1.48 7.62 -52.49 -0.40 1.08 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.63 8.11 -51.92 -0.42 0.21 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.03 0.73 8.00 -51.93 -0.42 0.32 16 44 H 0.06 1.58 7.57 -51.93 -0.39 1.18 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -34.85 370.63 -10.25 -45.10 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.97 Total: 1.54 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.50 Total: -2.70 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.42 Total: -57.49 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.85 -10.25 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.992 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds