Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21557 * 120.00115 * 359.97438 * 5 4 2 7 7 C 1.47770 * 119.99728 * 179.97438 * 5 4 2 8 8 C 1.40626 * 119.80827 * 359.72919 * 7 5 4 9 9 C 1.35701 * 120.92343 * 179.77322 * 8 7 5 10 10 C 1.40756 * 120.11144 * 0.47121 * 9 8 7 11 11 N 1.33652 * 120.82850 * 179.78248 * 10 9 8 12 12 C 1.31116 * 121.39087 * 180.02562 * 11 10 9 13 13 C 1.39314 * 121.76905 * 0.02562 * 12 11 10 14 14 C 1.36579 * 119.90901 * 359.97438 * 13 12 11 15 15 C 1.40892 * 118.15561 * 0.02562 * 14 13 12 16 16 C 1.38551 * 119.80355 * 179.97438 * 7 5 4 17 17 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 18 18 C 1.53497 * 114.20590 * 174.71570 * 17 2 1 19 19 N 1.47063 * 87.98756 * 220.34354 * 18 17 2 20 20 C 1.36933 * 136.06152 * 207.08176 * 19 18 17 21 21 H 1.08001 * 119.99949 * 6.49131 * 20 19 18 22 22 C 1.38805 * 120.00422 * 186.49224 * 20 19 18 23 23 N 1.31621 * 119.99799 * 6.27156 * 22 20 19 24 24 Si 1.86798 * 120.00357 * 186.27268 * 22 20 19 25 25 H 1.48507 * 109.47008 * 265.00931 * 24 22 20 26 26 H 1.48498 * 109.47125 * 25.00956 * 24 22 20 27 27 H 1.48499 * 109.47537 * 145.01308 * 24 22 20 28 28 C 1.47070 * 87.88273 * 27.34326 * 19 18 17 29 29 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 30 30 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 31 31 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 32 32 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 33 33 H 1.08010 * 119.53435 * 359.97438 * 8 7 5 34 34 H 1.08010 * 119.94236 * 180.25794 * 9 8 7 35 35 H 1.08002 * 119.11574 * 180.02562 * 12 11 10 36 36 H 1.08004 * 120.04639 * 179.97438 * 13 12 11 37 37 H 1.07993 * 120.92404 * 179.97438 * 14 13 12 38 38 H 1.07999 * 120.29938 * 0.02562 * 16 7 5 39 39 H 1.08994 * 113.41243 * 307.91400 * 17 2 1 40 40 H 1.09000 * 113.46682 * 105.56058 * 18 17 2 41 41 H 1.09008 * 113.52408 * 335.13690 * 18 17 2 42 42 H 0.97005 * 119.99736 * 179.97438 * 23 22 20 43 43 H 1.09006 * 113.46411 * 87.43633 * 28 19 18 44 44 H 1.09003 * 113.46855 * 217.87664 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1612 2.4116 7 6 2.6392 -0.7152 3.5637 8 6 2.9667 -2.0812 3.4974 9 6 3.4249 -2.7423 4.5903 10 6 3.5698 -2.0653 5.8158 11 7 4.0156 -2.7034 6.9022 12 6 4.1543 -2.0839 8.0494 13 6 3.8449 -0.7334 8.1958 14 6 3.3841 -0.0205 7.1258 15 6 3.2364 -0.6897 5.8948 16 6 2.7705 -0.0200 4.7549 17 6 2.0399 -0.7212 -1.2494 18 6 3.5641 -0.6739 -1.4253 19 7 3.3395 -0.4640 -2.8634 20 6 4.0309 -0.7208 -4.0172 21 1 4.9487 -1.2889 -3.9816 22 6 3.5522 -0.2509 -5.2324 23 7 2.5037 0.5440 -5.2637 24 14 4.3961 -0.7468 -6.8234 25 1 5.3782 0.2983 -7.2094 26 1 5.1001 -2.0397 -6.6283 27 1 3.3812 -0.8930 -7.8975 28 6 2.0485 0.1492 -2.5168 29 1 -0.3634 -1.0240 0.0874 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4362 -0.9304 32 1 2.2491 -1.6318 1.1524 33 1 2.8549 -2.6107 2.5626 34 1 3.6756 -3.7905 4.5204 35 1 4.5182 -2.6352 8.9038 36 1 3.9693 -0.2509 9.1540 37 1 3.1389 1.0269 7.2209 38 1 2.5145 1.0280 4.8053 39 1 1.6048 -1.7111 -1.3859 40 1 4.0570 -1.6187 -1.1962 41 1 4.0330 0.1767 -0.9304 42 1 2.1694 0.8726 -6.1130 43 1 2.1169 1.2171 -2.3095 44 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970364923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = 53.543155 kcal Electronic energy + Delta-G solvation = -26076.182913 eV Core-core repulsion = 22380.274566 eV Total energy + Delta-G solvation = -3695.908347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94619 -41.01999 -39.84027 -37.72185 -36.29612 -34.51155 -34.21402 -32.57001 -31.13682 -30.94375 -29.38938 -26.62012 -26.00077 -25.52185 -24.84360 -23.37077 -22.80921 -21.79179 -21.03766 -19.30648 -18.86544 -18.68919 -17.94888 -17.09218 -16.95690 -16.77269 -16.10563 -15.86239 -15.59572 -15.50424 -15.28791 -14.97116 -14.95658 -14.71743 -14.40720 -14.13976 -13.97671 -13.48571 -13.23416 -13.09973 -13.06381 -13.01354 -12.72038 -12.66963 -12.46094 -12.38446 -12.06516 -11.87233 -11.60710 -11.59560 -11.13065 -10.93301 -10.86799 -10.51064 -10.15738 -9.80811 -9.32797 -8.95674 -7.94768 -5.27322 -0.80032 -0.33357 0.87973 1.41833 1.45173 1.46985 1.56620 2.06523 2.31058 2.46170 3.09259 3.27991 3.28559 3.42035 3.54308 3.56274 3.72414 3.78853 3.95109 3.99592 4.02193 4.06688 4.26048 4.31823 4.42121 4.52729 4.55224 4.77221 4.77558 4.83420 4.86415 4.89225 4.93868 4.96942 5.03685 5.09264 5.20166 5.20464 5.28187 5.30202 5.46242 5.49065 5.53321 5.62169 5.76313 5.89510 6.53915 6.88249 6.88956 7.18615 7.57223 8.58645 9.24432 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.002239 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.404966 B =12500.436644 C =13113.857514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 H 0.063 0.937 4 N -0.700 5.700 5 C 0.558 3.442 6 O -0.579 6.579 7 C -0.145 4.145 8 C -0.070 4.070 9 C -0.104 4.104 10 C 0.123 3.877 11 N -0.509 5.509 12 C 0.138 3.862 13 C -0.172 4.172 14 C -0.054 4.054 15 C -0.130 4.130 16 C -0.030 4.030 17 C -0.113 4.113 18 C 0.125 3.875 19 N -0.643 5.643 20 C -0.232 4.232 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.955 5.955 24 Si 0.982 3.018 25 H -0.289 1.289 26 H -0.264 1.264 27 H -0.292 1.292 28 C 0.171 3.829 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.192 0.808 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -6.563 29.157 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.060 3.940 3 H 0.081 0.919 4 N -0.352 5.352 5 C 0.346 3.654 6 O -0.460 6.460 7 C -0.148 4.148 8 C -0.090 4.090 9 C -0.122 4.122 10 C 0.002 3.998 11 N -0.217 5.217 12 C -0.033 4.033 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.132 4.132 16 C -0.049 4.049 17 C -0.133 4.133 18 C 0.000 4.000 19 N -0.368 5.368 20 C -0.360 4.360 21 H 0.104 0.896 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.809 3.191 25 H -0.216 1.216 26 H -0.188 1.188 27 H -0.219 1.219 28 C 0.044 3.956 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.252 0.748 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.209 0.791 36 H 0.194 0.806 37 H 0.181 0.819 38 H 0.161 0.839 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.448 -6.665 28.615 29.385 hybrid contribution 0.279 0.927 -1.285 1.609 sum -0.170 -5.738 27.331 27.927 Atomic orbital electron populations 1.22050 0.93812 1.03076 1.02086 1.20720 0.94860 0.95879 0.82576 0.91906 1.45839 1.66069 1.14673 1.08586 1.18487 0.77071 0.86055 0.83741 1.90753 1.52397 1.17213 1.85638 1.19903 1.05888 0.95352 0.93670 1.21136 0.95738 0.92188 0.99985 1.20900 0.99821 1.01423 0.90093 1.19308 0.96038 0.90473 0.93982 1.68129 1.14585 1.39218 0.99809 1.23732 0.91483 0.92991 0.95124 1.22321 1.00029 0.95474 1.01324 1.21945 0.93752 1.01557 0.90724 1.18983 1.03497 0.94967 0.95802 1.21544 0.92809 1.00240 0.90348 1.23353 0.96314 1.00490 0.93137 1.22495 0.94830 0.98584 0.84109 1.46089 1.20125 1.69551 1.01081 1.19370 1.05314 1.27398 0.83876 0.89553 1.25727 0.99744 0.99607 1.01145 1.70034 1.27603 1.37524 1.25157 0.85016 0.77126 0.78162 0.78748 1.21580 1.18833 1.21886 1.21895 0.88664 0.93501 0.91503 0.90509 0.92910 0.91624 0.74844 0.82443 0.82757 0.79092 0.80625 0.81859 0.83895 0.86863 0.92133 0.95561 0.94166 0.97166 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.47 71.98 0.68 -3.35 16 2 C 0.16 4.90 2.34 44.99 0.11 5.00 16 3 H 0.06 2.25 7.43 -2.39 -0.02 2.24 16 4 N -0.70 -16.99 4.91 -445.48 -2.19 -19.18 16 5 C 0.56 15.24 7.73 86.76 0.67 15.91 16 6 O -0.58 -20.25 15.97 -3.90 -0.06 -20.31 16 7 C -0.15 -3.22 5.87 -20.10 -0.12 -3.34 16 8 C -0.07 -1.23 9.44 22.26 0.21 -1.02 16 9 C -0.10 -1.87 9.95 22.30 0.22 -1.65 16 10 C 0.12 2.50 6.61 40.35 0.27 2.76 16 11 N -0.51 -9.61 10.33 -188.45 -1.95 -11.56 16 12 C 0.14 1.64 11.15 85.06 0.95 2.59 16 13 C -0.17 -1.55 10.03 22.14 0.22 -1.33 16 14 C -0.05 -0.69 9.89 22.53 0.22 -0.47 16 15 C -0.13 -2.47 5.74 -21.29 -0.12 -2.60 16 16 C -0.03 -0.63 9.35 22.82 0.21 -0.41 16 17 C -0.11 -3.86 3.52 -10.37 -0.04 -3.90 16 18 C 0.12 4.94 8.14 83.17 0.68 5.61 16 19 N -0.64 -33.32 3.76 -737.98 -2.78 -36.10 16 20 C -0.23 -13.13 10.73 84.03 0.90 -12.23 16 21 H 0.09 4.65 7.84 -2.91 -0.02 4.62 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 23 N -0.95 -58.61 11.80 21.65 0.26 -58.36 16 24 Si 0.98 45.96 29.56 68.60 2.03 47.99 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 C 0.17 8.09 6.79 83.26 0.57 8.66 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.41 7.48 6.59 -92.71 -0.61 6.87 16 33 H 0.16 1.86 6.35 -2.91 -0.02 1.84 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.14 2.98 7.62 -2.91 -0.02 2.95 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.09 8.11 -2.38 -0.02 1.07 16 42 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 43 H 0.01 0.53 8.00 -2.38 -0.02 0.51 16 44 H 0.03 1.84 7.57 -2.39 -0.02 1.82 16 Total: -1.00 -78.13 370.63 1.82 -76.32 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.41 Total: 14.48 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.10 Total: 6.72 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -6.66 Total: -125.19 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.06 Total: -20.31 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -78.13 1.82 -76.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.861 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds