Wall clock time and date at job start Tue Mar 31 2020 15:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 N 1.46499 * 109.47171 * 240.00095 * 2 1 3 5 5 C 1.34781 * 120.00216 * 85.00326 * 4 2 1 6 6 O 1.21562 * 119.99312 * 359.97438 * 5 4 2 7 7 C 1.47760 * 120.00305 * 179.97438 * 5 4 2 8 8 C 1.40630 * 119.80422 * 359.72922 * 7 5 4 9 9 C 1.35707 * 120.92240 * 179.72811 * 8 7 5 10 10 C 1.40764 * 120.10952 * 0.51771 * 9 8 7 11 11 N 1.33643 * 120.83182 * 179.76263 * 10 9 8 12 12 C 1.31116 * 121.39640 * 180.02562 * 11 10 9 13 13 C 1.39316 * 121.76897 * 359.97438 * 12 11 10 14 14 C 1.36579 * 119.90259 * 0.02562 * 13 12 11 15 15 C 1.40890 * 118.16042 * 359.97438 * 14 13 12 16 16 C 1.38546 * 119.80523 * 179.97438 * 7 5 4 17 17 C 1.53001 * 109.47155 * 120.00552 * 2 1 3 18 18 C 1.53955 * 113.73896 * 281.99555 * 17 2 1 19 19 N 1.47816 * 86.03640 * 222.08348 * 18 17 2 20 20 C 1.36934 * 134.45354 * 204.64801 * 19 18 17 21 21 H 1.08001 * 119.99583 * 179.87061 * 20 19 18 22 22 C 1.38812 * 120.00072 * 359.86186 * 20 19 18 23 23 N 1.31615 * 120.00178 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99598 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47442 * 60.00150 * 24 22 20 26 26 H 1.48503 * 109.47030 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47282 * 299.99671 * 24 22 20 28 28 C 1.47586 * 91.04989 * 24.55023 * 19 18 17 29 29 H 1.08998 * 109.47098 * 55.80991 * 1 2 3 30 30 H 1.09000 * 109.47575 * 295.80834 * 1 2 3 31 31 H 1.09008 * 109.47315 * 175.80448 * 1 2 3 32 32 H 0.97004 * 120.00234 * 264.99973 * 4 2 1 33 33 H 1.07999 * 119.54209 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.94784 * 180.27498 * 9 8 7 35 35 H 1.07997 * 119.11711 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.04999 * 179.97438 * 13 12 11 37 37 H 1.07998 * 120.92160 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.30156 * 0.02562 * 16 7 5 39 39 H 1.08997 * 112.94525 * 53.58733 * 17 2 1 40 40 H 1.09001 * 113.76698 * 336.35106 * 18 17 2 41 41 H 1.09001 * 113.76676 * 107.74455 * 18 17 2 42 42 H 0.96991 * 120.00127 * 180.02562 * 23 22 20 43 43 H 1.09003 * 113.76558 * 221.14959 * 28 19 18 44 44 H 1.08999 * 113.87180 * 89.76821 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8576 1.1612 -2.4117 7 6 2.6402 -0.7146 -3.5635 8 6 2.9793 -2.0776 -3.4942 9 6 3.4292 -2.7409 -4.5894 10 6 3.5731 -2.0640 -5.8152 11 7 4.0193 -2.7018 -6.9015 12 6 4.1581 -2.0821 -8.0486 13 6 3.8485 -0.7317 -8.1950 14 6 3.3872 -0.0191 -7.1251 15 6 3.2394 -0.6884 -5.8942 16 6 2.7705 -0.0196 -4.7549 17 6 2.0399 -0.7214 1.2492 18 6 1.9704 0.1314 2.5291 19 7 3.3067 -0.4165 2.8438 20 6 4.0150 -0.6125 3.9992 21 1 5.0034 -1.0460 3.9597 22 6 3.4627 -0.2539 5.2212 23 7 2.2581 0.2740 5.2694 24 14 4.4294 -0.5208 6.7972 25 1 5.6974 0.2497 6.7367 26 1 3.6238 -0.0590 7.9562 27 1 4.7350 -1.9657 6.9519 28 6 3.5697 -0.6694 1.4138 29 1 -0.3633 0.5775 -0.8500 30 1 -0.3634 0.4474 0.9251 31 1 -0.3634 -1.0250 -0.0752 32 1 2.2490 -1.6318 -1.1527 33 1 2.8766 -2.6050 -2.5574 34 1 3.6809 -3.7887 -4.5194 35 1 4.5215 -2.6335 -8.9032 36 1 3.9737 -0.2489 -9.1529 37 1 3.1426 1.0285 -7.2199 38 1 2.5138 1.0283 -4.8054 39 1 1.6199 -1.7205 1.3641 40 1 1.9687 1.2052 2.3420 41 1 1.1911 -0.1819 3.2239 42 1 1.8724 0.5249 6.1232 43 1 4.0650 -1.6208 1.2198 44 1 4.0391 0.1676 0.8968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970364925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:16 Heat of formation + Delta-G solvation = 51.016665 kcal Electronic energy + Delta-G solvation = -26093.153529 eV Core-core repulsion = 22397.135625 eV Total energy + Delta-G solvation = -3696.017904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94393 -40.97821 -39.69222 -37.71627 -36.26174 -34.51011 -34.16248 -32.54963 -31.13584 -30.93941 -29.32132 -26.72659 -26.04157 -25.45390 -24.84351 -23.35601 -22.79132 -21.79108 -20.93686 -19.28532 -18.87001 -18.68228 -17.95684 -17.12512 -16.93398 -16.76490 -16.10505 -15.82637 -15.58982 -15.50010 -15.28495 -14.96341 -14.95559 -14.69676 -14.40764 -14.08910 -13.96938 -13.43383 -13.26920 -13.10610 -13.06847 -12.94256 -12.70323 -12.63853 -12.46114 -12.39870 -12.02966 -11.80469 -11.59862 -11.59613 -11.23339 -10.98873 -10.85892 -10.51070 -10.14897 -9.80775 -9.32864 -8.92353 -7.90582 -5.24108 -0.80081 -0.33435 0.87933 1.41785 1.45149 1.48648 1.54759 2.07428 2.31043 2.47432 3.09190 3.28063 3.29425 3.38941 3.56166 3.57064 3.72919 3.81214 3.94601 3.99070 4.02169 4.06623 4.27002 4.31723 4.44845 4.52691 4.57458 4.77105 4.77384 4.84183 4.86690 4.89161 4.94462 4.97629 5.03631 5.09693 5.20270 5.24945 5.28132 5.31311 5.46869 5.52901 5.54699 5.65253 5.76258 5.94162 6.53930 6.88952 6.91986 7.18649 7.60690 8.56438 9.26271 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025145 B = 0.002242 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.282841 B =12487.600850 C =13076.097446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.063 0.937 4 N -0.701 5.701 5 C 0.558 3.442 6 O -0.579 6.579 7 C -0.145 4.145 8 C -0.071 4.071 9 C -0.104 4.104 10 C 0.123 3.877 11 N -0.509 5.509 12 C 0.138 3.862 13 C -0.172 4.172 14 C -0.054 4.054 15 C -0.130 4.130 16 C -0.029 4.029 17 C -0.109 4.109 18 C 0.171 3.829 19 N -0.644 5.644 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.126 3.874 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.192 0.808 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.011 0.989 41 H 0.048 0.952 42 H 0.249 0.751 43 H 0.063 0.937 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -5.830 -29.187 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.081 0.919 4 N -0.352 5.352 5 C 0.346 3.654 6 O -0.460 6.460 7 C -0.148 4.148 8 C -0.091 4.091 9 C -0.122 4.122 10 C 0.002 3.998 11 N -0.217 5.217 12 C -0.033 4.033 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.132 4.132 16 C -0.049 4.049 17 C -0.129 4.129 18 C 0.045 3.955 19 N -0.371 5.371 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.199 1.199 28 C 0.001 3.999 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.251 0.749 33 H 0.175 0.825 34 H 0.172 0.828 35 H 0.209 0.791 36 H 0.194 0.806 37 H 0.181 0.819 38 H 0.161 0.839 39 H 0.126 0.874 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.125 -5.920 -28.660 29.265 hybrid contribution 0.323 0.900 1.289 1.605 sum 0.448 -5.020 -27.371 27.831 Atomic orbital electron populations 1.22050 0.93932 1.03020 1.02049 1.20799 0.94816 0.95970 0.82742 0.91902 1.45853 1.66048 1.14658 1.08618 1.18486 0.77090 0.86053 0.83733 1.90753 1.52407 1.17225 1.85631 1.19900 1.05839 0.95395 0.93676 1.21135 0.95749 0.92205 0.99969 1.20900 0.99890 1.01390 0.90054 1.19306 0.96041 0.90470 0.93980 1.68123 1.14589 1.39224 0.99812 1.23731 0.91486 0.92996 0.95116 1.22322 1.00016 0.95475 1.01327 1.21946 0.93757 1.01560 0.90715 1.18985 1.03475 0.94975 0.95812 1.21544 0.92803 1.00216 0.90367 1.23464 0.95962 1.00493 0.92961 1.22137 0.88197 0.93726 0.91444 1.46422 1.17202 1.72296 1.01162 1.19391 0.98720 1.34258 0.84158 0.89938 1.25646 0.98162 1.01608 1.00730 1.69985 1.16727 1.48763 1.24754 0.85144 0.77396 0.78137 0.78601 1.20632 1.22016 1.19895 1.22686 0.94880 0.98478 0.83807 0.92932 0.91641 0.90619 0.74879 0.82476 0.82767 0.79093 0.80615 0.81854 0.83889 0.87416 0.97098 0.93410 0.94206 0.91900 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.46 71.98 0.68 -3.42 16 2 C 0.16 4.84 2.29 44.99 0.10 4.95 16 3 H 0.06 2.26 7.49 -2.39 -0.02 2.24 16 4 N -0.70 -17.10 4.90 -445.50 -2.18 -19.28 16 5 C 0.56 15.28 7.73 86.76 0.67 15.95 16 6 O -0.58 -20.28 15.97 -3.91 -0.06 -20.34 16 7 C -0.15 -3.23 5.87 -20.10 -0.12 -3.35 16 8 C -0.07 -1.23 9.44 22.27 0.21 -1.02 16 9 C -0.10 -1.87 9.95 22.30 0.22 -1.65 16 10 C 0.12 2.50 6.61 40.36 0.27 2.77 16 11 N -0.51 -9.62 10.33 -188.45 -1.95 -11.57 16 12 C 0.14 1.64 11.15 85.06 0.95 2.59 16 13 C -0.17 -1.55 10.03 22.14 0.22 -1.33 16 14 C -0.05 -0.69 9.89 22.53 0.22 -0.47 16 15 C -0.13 -2.48 5.74 -21.29 -0.12 -2.60 16 16 C -0.03 -0.63 9.35 22.82 0.21 -0.41 16 17 C -0.11 -3.75 3.35 -10.13 -0.03 -3.79 16 18 C 0.17 8.07 6.90 86.44 0.60 8.67 16 19 N -0.64 -33.29 3.70 -715.97 -2.65 -35.94 16 20 C -0.24 -13.45 10.70 84.03 0.90 -12.55 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 23 N -0.95 -58.03 11.39 21.65 0.25 -57.78 16 24 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 28 C 0.13 4.96 8.38 86.49 0.72 5.68 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.85 7.99 -2.39 -0.02 1.83 16 31 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.41 7.55 6.59 -92.70 -0.61 6.94 16 33 H 0.16 1.88 6.35 -2.91 -0.02 1.86 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.14 2.98 7.62 -2.91 -0.02 2.95 16 39 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.01 0.56 8.04 -2.39 -0.02 0.54 16 41 H 0.05 2.50 7.16 -2.39 -0.02 2.49 16 42 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -77.43 369.75 2.02 -75.41 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.41 Total: 14.86 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.17 Total: 6.53 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -6.53 Total: -124.58 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.43 2.02 -75.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970364925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.430 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds