Wall clock time and date at job start Tue Mar 31 2020 15:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46866 * 120.00530 * 2 1 3 5 5 C 1.34768 * 119.99743 * 274.99573 * 4 2 1 6 6 O 1.21545 * 120.00698 * 0.02562 * 5 4 2 7 7 C 1.47892 * 119.99784 * 180.02562 * 5 4 2 8 8 C 1.40569 * 119.70430 * 0.02562 * 7 5 4 9 9 C 1.35815 * 120.73585 * 180.02562 * 8 7 5 10 10 C 1.40556 * 119.98316 * 359.97438 * 9 8 7 11 11 C 1.40819 * 121.13616 * 180.02562 * 10 9 8 12 12 C 1.36552 * 118.19742 * 179.97438 * 11 10 9 13 13 C 1.39424 * 119.94059 * 0.04072 * 12 11 10 14 14 N 1.31016 * 121.71186 * 359.97438 * 13 12 11 15 15 C 1.33750 * 121.35078 * 0.02562 * 14 13 12 16 16 C 1.38403 * 119.70451 * 179.72895 * 7 5 4 17 17 C 1.53000 * 109.46982 * 240.00251 * 2 1 3 18 18 C 1.53491 * 114.20581 * 175.13701 * 17 2 1 19 19 N 1.47068 * 87.98931 * 220.34690 * 18 17 2 20 20 C 1.36939 * 136.05910 * 207.08893 * 19 18 17 21 21 H 1.07998 * 120.00182 * 7.79505 * 20 19 18 22 22 C 1.38813 * 119.99786 * 187.79929 * 20 19 18 23 23 N 1.31621 * 119.99915 * 195.16074 * 22 20 19 24 24 Si 1.86799 * 119.99814 * 15.16296 * 22 20 19 25 25 H 1.48507 * 109.47258 * 269.99571 * 24 22 20 26 26 H 1.48497 * 109.47644 * 30.00108 * 24 22 20 27 27 H 1.48510 * 109.46916 * 150.00000 * 24 22 20 28 28 C 1.47064 * 87.88132 * 27.34445 * 19 18 17 29 29 H 1.09000 * 109.47347 * 64.83240 * 1 2 3 30 30 H 1.09001 * 109.47388 * 184.83581 * 1 2 3 31 31 H 1.08999 * 109.47241 * 304.83623 * 1 2 3 32 32 H 0.96994 * 119.99876 * 95.00252 * 4 2 1 33 33 H 1.07999 * 119.63819 * 359.97438 * 8 7 5 34 34 H 1.08000 * 120.01392 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.90337 * 359.95657 * 11 10 9 36 36 H 1.08001 * 120.03190 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.14344 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.23728 * 0.02562 * 16 7 5 39 39 H 1.09004 * 113.41670 * 308.34718 * 17 2 1 40 40 H 1.09006 * 113.46406 * 105.56897 * 18 17 2 41 41 H 1.09000 * 113.52637 * 335.13768 * 18 17 2 42 42 H 0.96996 * 119.99969 * 354.93710 * 23 22 20 43 43 H 1.08997 * 113.47035 * 87.43951 * 28 19 18 44 44 H 1.09006 * 113.46815 * 217.87607 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3570 6 8 1.8576 1.1608 2.4119 7 6 2.6405 -0.7156 3.5644 8 6 2.9739 -2.0794 3.4939 9 6 3.4285 -2.7403 4.5898 10 6 3.5705 -2.0602 5.8116 11 6 4.0401 -2.7215 6.9628 12 6 4.1553 -2.0026 8.1180 13 6 3.8108 -0.6517 8.1343 14 7 3.3738 -0.0394 7.0615 15 6 3.2377 -0.6855 5.8984 16 6 2.7757 -0.0180 4.7521 17 6 2.0400 -0.7212 -1.2493 18 6 3.5649 -0.6826 -1.4198 19 7 3.3466 -0.4678 -2.8583 20 6 4.0405 -0.7260 -4.0102 21 1 4.9434 -1.3177 -3.9757 22 6 3.5835 -0.2273 -5.2224 23 7 4.0589 -0.7063 -6.3524 24 14 2.2937 1.1237 -5.2497 25 1 0.9394 0.5148 -5.2731 26 1 2.4357 1.9684 -4.0367 27 1 2.4805 1.9620 -6.4613 28 6 2.0581 0.1522 -2.5146 29 1 -0.3634 0.4370 -0.9301 30 1 -0.3634 -1.0240 0.0866 31 1 -0.3634 0.5870 0.8435 32 1 2.2490 -1.6318 1.1525 33 1 2.8666 -2.6077 2.5581 34 1 3.6809 -3.7883 4.5226 35 1 4.3017 -3.7688 6.9329 36 1 4.5128 -2.4800 9.0184 37 1 3.9065 -0.0955 9.0550 38 1 2.5220 1.0308 4.7987 39 1 1.5993 -1.7082 -1.3899 40 1 4.0513 -1.6310 -1.1915 41 1 4.0372 0.1639 -0.9213 42 1 4.7803 -1.3545 -6.3390 43 1 2.1321 1.2192 -2.3045 44 1 1.2607 -0.0848 -3.2190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970609830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:25 Heat of formation + Delta-G solvation = 80.323065 kcal Electronic energy + Delta-G solvation = -26194.618307 eV Core-core repulsion = 22499.871224 eV Total energy + Delta-G solvation = -3694.747083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28438 -40.03255 -38.63682 -37.04600 -35.12649 -33.88376 -32.48601 -31.63556 -30.40624 -30.16383 -27.82309 -25.60268 -25.06576 -24.28886 -23.76418 -22.52605 -21.40392 -20.71879 -19.67963 -18.60245 -17.87484 -17.49613 -17.25265 -16.41035 -16.13914 -15.17685 -15.16536 -14.88821 -14.69225 -14.52700 -14.26217 -14.01271 -13.92311 -13.65197 -13.46641 -13.35698 -13.03193 -12.35510 -12.25232 -12.03400 -12.01231 -11.94380 -11.78175 -11.22937 -11.10913 -10.96551 -10.74094 -10.36823 -10.08384 -10.00513 -9.91181 -9.47508 -9.27027 -9.18192 -9.04075 -8.70743 -8.67805 -7.18758 -6.31173 -3.23345 -0.13110 0.23760 1.49574 2.14864 2.99015 3.10017 3.41450 3.49845 3.63529 3.74680 3.87094 4.12757 4.26804 4.42100 4.45757 4.54473 4.59312 4.67679 4.71904 4.79888 4.96337 5.04858 5.09927 5.34563 5.40136 5.41972 5.45605 5.49815 5.54742 5.62871 5.73810 5.83921 5.85769 5.91962 6.04046 6.07750 6.17198 6.25113 6.25253 6.32017 6.33415 6.39336 6.54469 6.91462 7.12235 7.44198 7.48273 8.12896 8.23025 8.96611 9.50135 10.36797 11.18663 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.002372 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.312863 B =11802.532872 C =12328.911553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.091 0.909 4 N -0.712 5.712 5 C 0.557 3.443 6 O -0.534 6.534 7 C -0.113 4.113 8 C -0.089 4.089 9 C -0.100 4.100 10 C -0.088 4.088 11 C -0.061 4.061 12 C -0.169 4.169 13 C 0.129 3.871 14 N -0.466 5.466 15 C 0.116 3.884 16 C -0.024 4.024 17 C -0.141 4.141 18 C 0.125 3.875 19 N -0.624 5.624 20 C -0.305 4.305 21 H 0.081 0.919 22 C -0.024 4.024 23 N -0.932 5.932 24 Si 1.061 2.939 25 H -0.292 1.292 26 H -0.281 1.281 27 H -0.295 1.295 28 C 0.114 3.886 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.047 0.953 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 -6.165 29.928 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.363 5.363 5 C 0.343 3.657 6 O -0.411 6.411 7 C -0.118 4.118 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.090 4.090 11 C -0.087 4.087 12 C -0.189 4.189 13 C -0.045 4.045 14 N -0.173 5.173 15 C -0.004 4.004 16 C -0.044 4.044 17 C -0.161 4.161 18 C -0.001 4.001 19 N -0.352 5.352 20 C -0.432 4.432 21 H 0.099 0.901 22 C -0.224 4.224 23 N -0.574 5.574 24 Si 0.892 3.108 25 H -0.220 1.220 26 H -0.207 1.207 27 H -0.222 1.222 28 C -0.012 4.012 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.169 0.831 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.771 -3.547 28.585 29.196 hybrid contribution 1.508 -2.301 1.012 2.931 sum -3.263 -5.848 29.597 30.345 Atomic orbital electron populations 1.22138 0.95100 1.02030 1.02584 1.21062 0.94012 0.97510 0.82701 0.89056 1.45994 1.66653 1.14115 1.09496 1.18151 0.77973 0.86529 0.83043 1.90788 1.50104 1.15346 1.84875 1.19981 1.03142 0.94313 0.94390 1.21013 0.97294 0.93204 0.99233 1.20886 0.99545 1.00174 0.91298 1.18973 1.00258 0.94518 0.95282 1.21532 0.95134 1.00338 0.91670 1.21981 1.01622 0.95928 0.99400 1.23034 0.92644 0.92174 0.96611 1.68043 1.12426 1.38282 0.98592 1.18780 0.98883 0.90199 0.92583 1.21260 0.93259 1.00822 0.89010 1.23576 0.98482 1.00426 0.93648 1.22337 0.92576 0.98466 0.86746 1.46199 1.18431 1.69653 1.00918 1.20128 1.09616 1.30253 0.83157 0.90115 1.25796 1.03778 1.02093 0.90687 1.70906 1.27912 1.32478 1.26062 0.83794 0.75203 0.76696 0.75083 1.22007 1.20705 1.22219 1.22640 0.90324 0.95668 0.92590 0.91127 0.92490 0.92367 0.76549 0.84830 0.84535 0.84102 0.84286 0.82139 0.83118 0.88263 0.93912 0.94732 0.92891 0.93527 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 2 C 0.15 2.10 2.34 -67.93 -0.16 1.94 16 3 H 0.09 1.46 7.42 -51.93 -0.39 1.08 16 4 N -0.71 -8.46 4.90 -54.74 -0.27 -8.73 16 5 C 0.56 7.46 7.73 -12.31 -0.10 7.36 16 6 O -0.53 -9.03 15.96 5.33 0.08 -8.94 16 7 C -0.11 -1.27 5.87 -105.01 -0.62 -1.89 16 8 C -0.09 -0.75 9.44 -39.57 -0.37 -1.13 16 9 C -0.10 -0.76 9.74 -39.58 -0.39 -1.14 16 10 C -0.09 -0.78 5.75 -106.72 -0.61 -1.40 16 11 C -0.06 -0.38 9.89 -39.21 -0.39 -0.77 16 12 C -0.17 -0.95 10.03 -39.75 -0.40 -1.35 16 13 C 0.13 0.94 11.15 -17.46 -0.19 0.75 16 14 N -0.47 -5.05 10.34 -10.98 -0.11 -5.16 16 15 C 0.12 1.29 6.60 -84.87 -0.56 0.73 16 16 C -0.02 -0.28 9.56 -38.68 -0.37 -0.65 16 17 C -0.14 -2.27 3.52 -89.97 -0.32 -2.58 16 18 C 0.13 2.40 8.13 -8.52 -0.07 2.33 16 19 N -0.62 -15.27 3.62 -184.61 -0.67 -15.94 16 20 C -0.31 -8.82 11.03 -15.06 -0.17 -8.98 16 21 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 22 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 23 N -0.93 -29.49 13.70 55.49 0.76 -28.73 16 24 Si 1.06 26.70 25.50 -169.99 -4.34 22.37 16 25 H -0.29 -6.99 6.97 56.52 0.39 -6.60 16 26 H -0.28 -6.60 5.66 56.52 0.32 -6.28 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 C 0.11 2.35 5.17 -8.38 -0.04 2.30 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.71 6.58 -40.82 -0.27 3.44 16 33 H 0.13 0.82 6.34 -52.49 -0.33 0.49 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.15 1.91 7.60 -52.49 -0.40 1.51 16 39 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 43 H 0.05 0.96 6.87 -51.93 -0.36 0.61 16 44 H 0.05 1.13 6.22 -51.93 -0.32 0.81 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -36.23 363.56 -9.51 -45.75 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.96 Total: 0.83 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.49 Total: -6.93 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.29 Total: -58.56 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -4.34 Total: 22.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.23 -9.51 -45.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970609830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.068 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds