Wall clock time and date at job start Tue Mar 31 2020 15:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47354 * 2 1 4 4 N 1.46506 * 109.46886 * 240.00177 * 2 1 3 5 5 C 1.34771 * 120.00429 * 85.00132 * 4 2 1 6 6 O 1.21547 * 119.99859 * 359.97438 * 5 4 2 7 7 C 1.47879 * 120.00358 * 179.97438 * 5 4 2 8 8 C 1.40584 * 119.70512 * 359.97438 * 7 5 4 9 9 C 1.35807 * 120.73652 * 179.97438 * 8 7 5 10 10 C 1.40549 * 119.98255 * 0.02562 * 9 8 7 11 11 C 1.40822 * 121.13695 * 180.02562 * 10 9 8 12 12 C 1.36556 * 118.19824 * 179.97438 * 11 10 9 13 13 C 1.39418 * 119.94232 * 359.97438 * 12 11 10 14 14 N 1.31013 * 121.71077 * 0.02562 * 13 12 11 15 15 C 1.33751 * 121.35139 * 0.02562 * 14 13 12 16 16 C 1.38402 * 119.70960 * 179.97438 * 7 5 4 17 17 C 1.53000 * 109.47517 * 119.99945 * 2 1 3 18 18 C 1.53948 * 113.74024 * 281.82379 * 17 2 1 19 19 N 1.47813 * 86.03531 * 222.08154 * 18 17 2 20 20 C 1.36936 * 134.45493 * 204.64541 * 19 18 17 21 21 H 1.07993 * 119.99976 * 179.86594 * 20 19 18 22 22 C 1.38815 * 119.99966 * 359.86567 * 20 19 18 23 23 N 1.31617 * 120.00266 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99793 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47472 * 59.99669 * 24 22 20 26 26 H 1.48507 * 109.46908 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47443 * 299.99648 * 24 22 20 28 28 C 1.47580 * 91.05005 * 24.54994 * 19 18 17 29 29 H 1.08994 * 109.46891 * 300.07276 * 1 2 3 30 30 H 1.09001 * 109.47176 * 60.07621 * 1 2 3 31 31 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99657 * 264.99091 * 4 2 1 33 33 H 1.07999 * 119.62793 * 359.96157 * 8 7 5 34 34 H 1.07995 * 120.00960 * 179.72108 * 9 8 7 35 35 H 1.07996 * 120.90377 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.02907 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.14269 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.23420 * 0.02562 * 16 7 5 39 39 H 1.08999 * 112.93827 * 53.41097 * 17 2 1 40 40 H 1.08998 * 113.76832 * 336.34969 * 18 17 2 41 41 H 1.08996 * 113.76717 * 107.73886 * 18 17 2 42 42 H 0.96993 * 120.00721 * 180.02562 * 23 22 20 43 43 H 1.09005 * 113.76879 * 221.15542 * 28 19 18 44 44 H 1.08998 * 113.87448 * 89.77006 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0183 -2.3572 6 8 1.8576 1.1609 -2.4119 7 6 2.6405 -0.7153 -3.5645 8 6 2.9740 -2.0792 -3.4942 9 6 3.4286 -2.7400 -4.5901 10 6 3.5705 -2.0598 -5.8118 11 6 4.0391 -2.7212 -6.9633 12 6 4.1533 -2.0024 -8.1187 13 6 3.8091 -0.6514 -8.1348 14 7 3.3734 -0.0390 -7.0617 15 6 3.2393 -0.6847 -5.8981 16 6 2.7698 -0.0191 -4.7537 17 6 2.0401 -0.7212 1.2492 18 6 1.9745 0.1330 2.5283 19 7 3.3099 -0.4178 2.8416 20 6 4.0195 -0.6143 3.9962 21 1 5.0067 -1.0503 3.9557 22 6 3.4699 -0.2530 5.2186 23 7 2.2666 0.2779 5.2681 24 14 4.4382 -0.5205 6.7935 25 1 5.7080 0.2468 6.7302 26 1 3.6354 -0.0554 7.9531 27 1 4.7405 -1.9660 6.9493 28 6 3.5702 -0.6729 1.4115 29 1 -0.3633 0.5149 0.8893 30 1 -0.3633 0.5127 -0.8907 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.8677 -2.6072 -2.5581 34 1 3.6856 -3.7867 -4.5216 35 1 4.3010 -3.7684 -6.9335 36 1 4.5101 -2.4800 -9.0194 37 1 3.9049 -0.0952 -9.0556 38 1 2.5123 1.0287 -4.8012 39 1 1.6176 -1.7192 1.3658 40 1 1.9751 1.2066 2.3400 41 1 1.1954 -0.1775 3.2244 42 1 1.8827 0.5307 6.1221 43 1 4.0628 -1.6258 1.2177 44 1 4.0409 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970609831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:27 Heat of formation + Delta-G solvation = 73.854182 kcal Electronic energy + Delta-G solvation = -26091.942047 eV Core-core repulsion = 22396.914453 eV Total energy + Delta-G solvation = -3695.027595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22565 -39.86314 -38.16082 -36.95113 -34.89054 -33.83258 -32.27580 -31.44486 -30.35096 -29.99316 -27.47710 -25.48343 -24.64100 -24.23308 -23.88369 -22.51360 -21.55799 -20.64155 -19.46505 -18.35092 -17.78422 -17.23558 -16.77349 -16.28040 -15.93100 -15.08269 -14.83717 -14.79362 -14.58986 -14.41167 -14.18451 -13.97612 -13.82514 -13.59262 -13.41505 -13.16853 -12.35687 -12.18138 -12.13671 -11.94625 -11.88212 -11.58967 -11.40043 -11.22257 -10.92979 -10.86541 -10.68570 -10.36179 -10.15186 -9.88504 -9.82299 -9.69636 -9.42302 -9.19244 -8.87555 -8.78488 -8.62936 -6.87234 -5.76203 -3.08357 -0.07629 0.29101 1.54886 2.21423 3.12598 3.18629 3.39819 3.43899 3.45265 3.80695 3.92842 4.17762 4.31956 4.45602 4.46813 4.53226 4.61318 4.77922 4.83363 5.08843 5.12879 5.18359 5.39583 5.39901 5.49654 5.53615 5.55329 5.64665 5.68730 5.82037 5.90254 5.96524 6.00363 6.07177 6.12976 6.27889 6.35868 6.38315 6.45258 6.57633 6.63074 6.79664 7.22720 7.36372 7.51990 7.55635 7.59015 7.98708 8.25074 9.05211 9.71451 10.60672 11.41037 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.002243 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.553670 B =12482.209143 C =13066.825699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.711 5.711 5 C 0.555 3.445 6 O -0.534 6.534 7 C -0.112 4.112 8 C -0.088 4.088 9 C -0.101 4.101 10 C -0.089 4.089 11 C -0.061 4.061 12 C -0.170 4.170 13 C 0.128 3.872 14 N -0.466 5.466 15 C 0.116 3.884 16 C -0.025 4.025 17 C -0.147 4.147 18 C 0.176 3.824 19 N -0.612 5.612 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.125 3.875 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.254 0.746 43 H 0.040 0.960 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -8.591 -26.508 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.341 3.659 6 O -0.412 6.412 7 C -0.117 4.117 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.091 4.091 11 C -0.087 4.087 12 C -0.190 4.190 13 C -0.045 4.045 14 N -0.173 5.173 15 C -0.004 4.004 16 C -0.045 4.045 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.338 5.338 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 C -0.001 4.001 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.216 -6.818 -26.044 26.923 hybrid contribution 0.983 -1.447 0.873 1.955 sum 0.767 -8.265 -25.172 26.505 Atomic orbital electron populations 1.22113 0.95285 1.01846 1.02396 1.21174 0.93906 0.97562 0.82799 0.89255 1.46065 1.66429 1.14039 1.09615 1.18151 0.78103 0.86569 0.83083 1.90787 1.50184 1.15361 1.84882 1.20024 1.02923 0.94316 0.94438 1.21027 0.97217 0.93210 0.99225 1.20876 0.99645 1.00157 0.91310 1.18968 1.00334 0.94488 0.95283 1.21527 0.95160 1.00307 0.91679 1.21972 1.01715 0.95939 0.99384 1.23023 0.92725 0.92170 0.96609 1.68040 1.12427 1.38303 0.98574 1.18780 0.98846 0.90208 0.92586 1.21261 0.93331 1.00847 0.89027 1.23868 0.97593 1.00778 0.94516 1.22229 0.89611 0.93907 0.89229 1.45983 1.16353 1.71889 0.99623 1.18969 0.98439 1.34891 0.82822 0.90381 1.24783 0.97075 1.01126 0.97501 1.69789 1.15334 1.47223 1.24531 0.86202 0.78898 0.77810 0.82855 1.21207 1.21539 1.21111 1.22537 0.93039 0.97679 0.86858 0.90962 0.92745 0.92725 0.76719 0.84802 0.84568 0.84138 0.84331 0.82180 0.83127 0.89291 0.95368 0.90660 0.93558 0.94185 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.44 37.16 0.35 -1.86 16 2 C 0.15 2.30 2.29 -67.93 -0.16 2.14 16 3 H 0.09 1.59 7.48 -51.93 -0.39 1.20 16 4 N -0.71 -9.20 4.89 -54.74 -0.27 -9.47 16 5 C 0.55 7.93 7.73 -12.32 -0.10 7.84 16 6 O -0.53 -9.59 15.96 5.32 0.08 -9.50 16 7 C -0.11 -1.33 5.87 -105.01 -0.62 -1.95 16 8 C -0.09 -0.79 9.44 -39.57 -0.37 -1.17 16 9 C -0.10 -0.80 9.74 -39.58 -0.39 -1.19 16 10 C -0.09 -0.82 5.75 -106.73 -0.61 -1.43 16 11 C -0.06 -0.40 9.89 -39.21 -0.39 -0.79 16 12 C -0.17 -1.00 10.03 -39.75 -0.40 -1.40 16 13 C 0.13 0.98 11.15 -17.46 -0.19 0.79 16 14 N -0.47 -5.23 10.34 -10.98 -0.11 -5.34 16 15 C 0.12 1.34 6.60 -84.87 -0.56 0.78 16 16 C -0.03 -0.31 9.56 -38.68 -0.37 -0.68 16 17 C -0.15 -2.60 3.35 -89.69 -0.30 -2.90 16 18 C 0.18 4.06 6.98 -2.84 -0.02 4.04 16 19 N -0.61 -15.70 3.70 -177.70 -0.66 -16.36 16 20 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.35 11.39 55.49 0.63 -26.72 16 24 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.12 2.51 8.38 -2.97 -0.02 2.48 16 29 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 4.08 6.58 -40.82 -0.27 3.81 16 33 H 0.13 0.90 6.34 -52.49 -0.33 0.56 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 37 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 2.00 7.60 -52.49 -0.40 1.60 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 41 H 0.08 1.91 7.16 -51.93 -0.37 1.53 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -35.02 369.87 -10.12 -45.14 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.95 Total: 1.58 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.40 Total: -2.09 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.41 Total: -57.89 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.02 -10.12 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970609831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.994 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds